Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010655

Physical Location & Seq

Genomic Coordinates Forward (+)

23416745 .. 23420444

Gene Structure 3700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGACCAATCGGTTCTGGACGACATAATCAACCGACTTCTCGAAGTCCGAGGCCGACCCGGGAAGCAGGTCCAGCTGTCGGAGTCGGAGATCCGGCAGCTCTGTCTGGTGTCTAAAGAAATCTTCTTGCAGCAGCCTAATTTGTTAGAGCTTGACGCACCCATCAAGATTTGTGGTGATATACATGGTCAGTACTCCGATCTTTTAAGGCTTTTCGAGTACGGTGGACTACCTCCTAAAGGCAATTACTTGTTCTTGGGGGATTATGTGGATCGGGGAAAGCAAAGTTTAGAAACAATATGTCTTCTCCTTGCATATAAAATAAAATATCCTGAGAATTTTTTCCTCTTGAGGGGAAACCATGAATGTGCGACTATAAACCGTATATACGGATTTTATGATGAGTGCAAGAGAAGATTCAACGTGAGACTATGGAAGACATTCACAGATTGTTTTAACTGCCTTCCAGTGGCAGCTCTGATTGATGAAAAGATTCTCTGCATGCATGGCGGTCTTTCTCCTGACCTGCATAATTTAGATCAAACCAGAAATTTACCACGGCCAACAGATGTACCAGAGACAGGTTTACTCTGTGACCTTCTCTGGTCTGATCCCAGTAAAGATGTTCAAGGTTGGGGAAGGAACGACCGTGGAGTTTCATTTACATTTGGTCCTGACACGGTGACGGAGTTTCTTCAGAAGCATGATTTGGATCTCATTTGTCGTGCTCACCAGGTTGTGGAGGATGGCTATGAGTTATTTGCCAACCGCCAACTTGTGACGATATTTTCAGCACCTAATTATTGTGGGGAATTTGATAATGCTGGTGCCATGATGAGTGTGGATGAGACATTAATGTGCTCTTTTCAAATACTAAAACCTGCAGATAAAAAGCCAAGATTCAATTTTGGGAGCATGACTACAGCTAAGCCTGGAAATACATCGTCTGGGGTTAGCGCTTTTGCGAGCACAGCAACAGCTAAGCCTAGGAATACTGTTACAGGAATCAGGTCCATGATGCACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

343

Amino Acids

38.65

Weight (kDa)

6.01

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 52	1.9e-22	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	54 - 247	1.3e-51	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29400 AT3G46820 AT5G59160 AT5G59160 AT5G59160
fragaria_vesca	FvH4_6g02160 FvH4_6g02160
malus_domestica	MD04G1229100.v1.1 MD12G1246200.v1.1
prunus_persica	Prupe.6G349000_v2.0.a1
pyrus_communis	pycom04g20300 pycom12g22570
rosa_chinensis	RchiOBHm_Chr3g0449941
rosa_laevigata	RLG00000025773
rosa_multiflora	Rmu_sc0002646.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427730
rosa_rugosa	Rorug02G0624100
rosa_samantha	Rh3AG023200 Rh3DG023700
rosa_wichuraiana	Rw3G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	58, 534, 889
AccB1I	GGYRCC	1 cut(s)	827
AccB7I	CCANNNNNTGG	1 cut(s)	739
AciI	CCGC	2 cut(s)	510, 769
AclWI	GGATC	4 cut(s)	85, 279, 605, 720
AcoI	YGGCCR	1 cut(s)	560
AcsI	RAATTY	3 cut(s)	337, 550, 812
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	3 cut(s)	194, 221, 573
AfeI	AGCGCT	1 cut(s)	958
AfiI	CCNNNNNNNGG	6 cut(s)	79, 239, 352, 469, 581, 739
AgsI	TTSAA	4 cut(s)	421, 629, 869, 904
AjnI	CCWGG	2 cut(s)	732, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
AluBI	AGCT	6 cut(s)	76, 100, 151, 476, 926, 980
AluI	AGCT	6 cut(s)	76, 100, 151, 476, 926, 980
Alw21I	GWGCWC	3 cut(s)	730, 863, 971
Alw26I	GTCTC	3 cut(s)	421, 572, 842
AlwI	GGATC	4 cut(s)	85, 279, 605, 720
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	958
AoxI	GGCC	2 cut(s)	52, 560
ApeKI	GCWGC	4 cut(s)	97, 130, 133, 473
ApoI	RAATTY	3 cut(s)	337, 550, 812
AseI	ATTAAT	1 cut(s)	854
Asp700I	GAANNNNTTC	3 cut(s)	341, 440, 492
AspA2I	CCTAGG	1 cut(s)	986
AspLEI	GCGC	1 cut(s)	959
AspS9I	GGNCC	4 cut(s)	4, 70, 671, 1011
AsuC2I	CCSGG	2 cut(s)	60, 61
AsuHPI	GGTGA	3 cut(s)	188, 694, 722
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	4 cut(s)	4, 70, 671, 1011
AvrII	CCTAGG	1 cut(s)	986
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BanI	GGYRCC	1 cut(s)	827
BbsI	GAAGAC	2 cut(s)	296, 443
Bbv12I	GWGCWC	3 cut(s)	730, 863, 971
BbvI	GCAGC	4 cut(s)	109, 142, 145, 485
BccI	CCATC	2 cut(s)	170, 740
BceAI	ACGGC	1 cut(s)	575
BciT130I	CCWGG	2 cut(s)	734, 933
BcnI	CCSGG	2 cut(s)	60, 61
BcoDI	GTCTC	3 cut(s)	421, 572, 842
BfaI	CTAG	1 cut(s)	987
BfmI	CTRYAG	2 cut(s)	882, 921
BfoI	RGCGCY	1 cut(s)	960
BfuAI	ACCTGC	3 cut(s)	58, 534, 889
BisI	GCNGC	4 cut(s)	98, 131, 134, 474
BlnI	CCTAGG	1 cut(s)	986
BlpI	GCTNAGC	2 cut(s)	927, 981
BlsI	GCNGC	4 cut(s)	99, 132, 135, 475
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	4 cut(s)	60, 61, 734, 933
Bme18I	GGWCC	4 cut(s)	4, 70, 671, 1011
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	4, 70, 671, 1011
BmiI	GGNNCC	1 cut(s)	829
BmrFI	CCNGG	4 cut(s)	60, 61, 734, 933
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	1008
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	2 cut(s)	296, 443
Bpu1102I	GCTNAGC	2 cut(s)	927, 981
BpuEI	CTTGAG	1 cut(s)	370
BpuMI	CCSGG	2 cut(s)	60, 61
BsaBI	GATNNNNATC	1 cut(s)	711
BsaJI	CCNNGG	5 cut(s)	49, 59, 557, 649, 986
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 239, 352, 469, 581, 739
Bse1I	ACTGG	2 cut(s)	467, 615
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	2 cut(s)	734, 933
BseDI	CCNNGG	5 cut(s)	49, 59, 557, 649, 986
BseGI	GGATG	2 cut(s)	751, 850
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	6 cut(s)	79, 239, 352, 469, 581, 739
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	467, 615
BseXI	GCAGC	4 cut(s)	109, 142, 145, 485
Bsh1285I	CGRYCG	1 cut(s)	649
BshFI	GGCC	2 cut(s)	54, 562
BshNI	GGYRCC	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	649
BsiHKAI	GWGCWC	3 cut(s)	730, 863, 971
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	60, 94
BslI	CCNNNNNNNGG	6 cut(s)	79, 239, 352, 469, 581, 739
BsmAI	GTCTC	3 cut(s)	421, 572, 842
BsnI	GGCC	2 cut(s)	54, 562
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	3 cut(s)	730, 863, 971
Bsp143I	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
Bsp1720I	GCTNAGC	2 cut(s)	927, 981
BspACI	CCGC	2 cut(s)	510, 769
BspANI	GGCC	2 cut(s)	54, 562
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	829
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	3 cut(s)	58, 534, 889
BspPI	GGATC	4 cut(s)	85, 279, 605, 720
BspT107I	GGYRCC	1 cut(s)	827
BsrI	ACTGG	2 cut(s)	467, 615
BssECI	CCNNGG	5 cut(s)	49, 59, 557, 649, 986
BssMI	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
BssT1I	CCWWGG	1 cut(s)	986
Bst2UI	CCWGG	2 cut(s)	734, 933
Bst4CI	ACNGT	5 cut(s)	224, 383, 650, 682, 997
BstC8I	GCNNGC	2 cut(s)	503, 967
BstDEI	CTNAG	3 cut(s)	333, 927, 981
BstDSI	CCRYGG	2 cut(s)	557, 649
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	751, 850
BstH2I	RGCGCY	1 cut(s)	960
BstHHI	GCGC	1 cut(s)	959
BstKTI	GATC	6 cut(s)	93, 202, 274, 541, 613, 715
BstMAI	GTCTC	3 cut(s)	421, 572, 842
BstMBI	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
BstMCI	CGRYCG	1 cut(s)	649
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 507, 971
BstNI	CCWGG	2 cut(s)	734, 933
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	4 cut(s)	58, 59, 732, 931
BstSFI	CTRYAG	2 cut(s)	882, 921
BstV1I	GCAGC	4 cut(s)	109, 142, 145, 485
BstV2I	GAAGAC	2 cut(s)	296, 443
BstX2I	RGATCY	2 cut(s)	90, 712
BstYI	RGATCY	2 cut(s)	90, 712
BsuRI	GGCC	2 cut(s)	54, 562
BtgI	CCRYGG	2 cut(s)	557, 649
BtsCI	GGATG	2 cut(s)	751, 850
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	3 cut(s)	58, 534, 889
Cac8I	GCNNGC	2 cut(s)	503, 967
CfoI	GCGC	1 cut(s)	959
Cfr13I	GGNCC	4 cut(s)	4, 70, 671, 1011
Cfr9I	CCCGGG	1 cut(s)	59
CseI	GACGC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	732
Csp6I	GTAC	3 cut(s)	193, 220, 572
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	8 cut(s)	185, 362, 502, 506, 704, 832, 916, 1015
CviQI	GTAC	3 cut(s)	193, 220, 572
DdeI	CTNAG	3 cut(s)	333, 927, 981
DpnI	GATC	6 cut(s)	92, 201, 273, 540, 612, 714
DpnII	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
EaeI	YGGCCR	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	986
Eco47I	GGWCC	4 cut(s)	4, 70, 671, 1011
Eco47III	AGCGCT	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	732, 931
EcoT14I	CCWWGG	1 cut(s)	986
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	986
FaeI	CATG	8 cut(s)	188, 365, 505, 509, 707, 835, 919, 1018
FatI	CATG	8 cut(s)	184, 361, 501, 505, 703, 831, 915, 1014
Fnu4HI	GCNGC	4 cut(s)	98, 131, 134, 474
FokI	GGATG	2 cut(s)	758, 857
Fsp4HI	GCNGC	4 cut(s)	98, 131, 134, 474
FspBI	CTAG	1 cut(s)	987
GlaI	GCGC	1 cut(s)	958
GluI	GCNGC	4 cut(s)	98, 131, 134, 474
HaeII	RGCGCY	1 cut(s)	960
HaeIII	GGCC	2 cut(s)	54, 562
HapII	CCGG	2 cut(s)	60, 94
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	959
Hin1II	CATG	8 cut(s)	188, 365, 505, 509, 707, 835, 919, 1018
Hin6I	GCGC	1 cut(s)	957
HinP1I	GCGC	1 cut(s)	957
HinfI	GANTC	5 cut(s)	83, 417, 493, 900, 1005
HpaII	CCGG	2 cut(s)	60, 94
HphI	GGTGA	3 cut(s)	188, 694, 722
Hpy166II	GTNNAC	2 cut(s)	227, 587
Hpy188I	TCNGA	7 cut(s)	50, 82, 88, 199, 480, 610, 699
Hpy188III	TCNNGA	7 cut(s)	17, 41, 166, 332, 349, 521, 674
Hpy8I	GTNNAC	2 cut(s)	227, 587
HpyAV	CCTTC	3 cut(s)	473, 608, 633
HpyCH4III	ACNGT	5 cut(s)	224, 383, 650, 682, 997
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	8 cut(s)	130, 314, 408, 501, 505, 529, 884, 1021
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 507, 971
HpyF3I	CTNAG	3 cut(s)	333, 927, 981
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	8 cut(s)	188, 365, 505, 509, 707, 835, 919, 1018
HspAI	GCGC	1 cut(s)	957
Kzo9I	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
LmnI	GCTCC	1 cut(s)	912
Lsp1109I	GCAGC	4 cut(s)	109, 142, 145, 485
LweI	GCATC	1 cut(s)	1008
MabI	ACCWGGT	1 cut(s)	732
MaeI	CTAG	1 cut(s)	987
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	4 cut(s)	593, 682, 778, 997
MalI	GATC	6 cut(s)	92, 201, 273, 540, 612, 714
MboI	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
MboII	GAAGA	5 cut(s)	115, 296, 426, 448, 686
MflI	RGATCY	2 cut(s)	90, 712
MhlI	GDGCHC	3 cut(s)	730, 863, 971
MluCI	AATT	8 cut(s)	139, 244, 337, 532, 550, 799, 812, 904
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	60, 66
MnlI	CCTC	5 cut(s)	44, 243, 345, 356, 736
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	3 cut(s)	341, 440, 492
MseI	TTAA	3 cut(s)	206, 456, 854
MslI	CAYNNNNRTG	2 cut(s)	366, 856
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	60, 94
MspR9I	CCNGG	4 cut(s)	60, 61, 734, 933
MvaI	CCWGG	2 cut(s)	734, 933
MwoI	GCNNNNNNNGC	3 cut(s)	73, 507, 971
NciI	CCSGG	2 cut(s)	60, 61
NdeII	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
NlaIII	CATG	8 cut(s)	188, 365, 505, 509, 707, 835, 919, 1018
NlaIV	GGNNCC	1 cut(s)	829
NmuCI	GTSAC	3 cut(s)	593, 682, 778
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PdmI	GAANNNNTTC	3 cut(s)	341, 440, 492
PfeI	GAWTC	4 cut(s)	417, 493, 900, 1005
PflMI	CCANNNNNTGG	1 cut(s)	739
PkrI	GCNGC	4 cut(s)	99, 132, 135, 475
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	732, 931
PspGI	CCWGG	2 cut(s)	732, 931
PspN4I	GGNNCC	1 cut(s)	829
PspPI	GGNCC	4 cut(s)	4, 70, 671, 1011
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	90, 712
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	194, 221, 573
RsaNI	GTAC	3 cut(s)	193, 220, 572
RseI	CAYNNNNRTG	2 cut(s)	366, 856
SaqAI	TTAA	3 cut(s)	206, 456, 854
SatI	GCNGC	4 cut(s)	98, 131, 134, 474
Sau3AI	GATC	6 cut(s)	90, 199, 271, 538, 610, 712
Sau96I	GGNCC	4 cut(s)	4, 70, 671, 1011
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	60, 61, 734, 933
SduI	GDGCHC	3 cut(s)	730, 863, 971
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	1008
SfcI	CTRYAG	2 cut(s)	882, 921
SinI	GGWCC	4 cut(s)	4, 70, 671, 1011
SmaI	CCCGGG	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	366, 856
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	8 cut(s)	139, 244, 337, 532, 550, 799, 812, 904
SsiI	CCGC	2 cut(s)	510, 769
SspMI	CTAG	1 cut(s)	987
StyD4I	CCNGG	4 cut(s)	58, 59, 732, 931
StyI	CCWWGG	1 cut(s)	986
TaaI	ACNGT	5 cut(s)	224, 383, 650, 682, 997
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	42, 216
TasI	AATT	8 cut(s)	139, 244, 337, 532, 550, 799, 812, 904
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	4 cut(s)	417, 493, 900, 1005
Tru1I	TTAA	3 cut(s)	206, 456, 854
Tru9I	TTAA	3 cut(s)	206, 456, 854
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	3 cut(s)	593, 682, 778
TseI	GCWGC	4 cut(s)	97, 130, 133, 473
Tsp45I	GTSAC	3 cut(s)	593, 682, 778
TspDTI	ATGAA	3 cut(s)	378, 501, 648
TspGWI	ACGGA	2 cut(s)	405, 701
TspMI	CCCGGG	1 cut(s)	59
TspRI	CASTG	1 cut(s)	474
Van91I	CCANNNNNTGG	1 cut(s)	739
VpaK11BI	GGWCC	4 cut(s)	4, 70, 671, 1011
VspI	ATTAAT	1 cut(s)	854
XagI	CCTNNNNNAGG	1 cut(s)	237
XapI	RAATTY	3 cut(s)	337, 550, 812
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	838
XmaI	CCCGGG	1 cut(s)	59
XmaJI	CCTAGG	1 cut(s)	986
XmnI	GAANNNNTTC	3 cut(s)	341, 440, 492
XspI	CTAG	1 cut(s)	987
ZrmI	AGTACT	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.