Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0018539

Physical Location & Seq

Genomic Coordinates Forward (+)

23502713 .. 23503164

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTAGCTGAAAACAAACTTTGTAACCTTGTTGTTAATTCTGTATTTTTATCCGGGCAGTGCAGTAGACATGAACTGATTCTGTGTCTTTTATTTGATATATTGGGATTAGTTTCTTCGGCGGAAAATGGTAACAGAACGGTGGATCTCCGATCAGATACGGTCACTAAACCATGCGAAACAATGCGGGCTGCAATGGCGTCGGCTGAAGTTGACGATGATGTACTCGGAGCTGACCCAACGGCATTCCGCTTAGAGTCAGAAATGGCAAAGGTCATGGGAAGGAAGCGGCACTTTTTGTTCCGTCAGGCACAATGGGAAACCTCATCAGTGTACTTGTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

116

Amino Acids

12.77

Weight (kDa)

5.3

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018539)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g22660
rosa_chinensis	RchiOBHm_Chr3g0449771
rosa_laevigata	RLG00000019787
rosa_multiflora	Rmu_sc0011575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105710
rosa_samantha	Rh2AG404500 Rh2BG414500 Rh2CG390800 Rh2DG424200
rosa_wichuraiana	Rw2G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	67
AciI	CCGC	4 cut(s)	122, 187, 250, 289
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	225, 335
AluBI	AGCT	2 cut(s)	8, 233
AluI	AGCT	2 cut(s)	8, 233
AlwI	GGATC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BcnI	CCSGG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	192, 290
BlsI	GCNGC	2 cut(s)	193, 291
Bme1390I	CCNGG	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	145, 152
BspACI	CCGC	4 cut(s)	122, 187, 250, 289
BspPI	GGATC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	201
BssMI	GATC	2 cut(s)	145, 152
BssNI	GRCGYC	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	142, 163, 345
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	148, 155
BstMBI	GATC	2 cut(s)	145, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	3 cut(s)	65, 336, 341
Cac8I	GCNNGC	1 cut(s)	189
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	224, 334
CviAII	CATG	3 cut(s)	71, 174, 277
CviJI	RGCY	4 cut(s)	8, 191, 206, 233
CviKI_1	RGCY	4 cut(s)	8, 191, 206, 233
CviQI	GTAC	2 cut(s)	224, 334
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	2 cut(s)	147, 154
DpnII	GATC	2 cut(s)	145, 152
EciI	GGCGGA	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	228
FaeI	CATG	3 cut(s)	74, 177, 280
FaiI	YATR	4 cut(s)	72, 101, 175, 278
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	3 cut(s)	70, 173, 276
FauI	CCCGC	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	192, 290
Fsp4HI	GCNGC	2 cut(s)	192, 290
GluI	GCNGC	2 cut(s)	192, 290
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	74, 177, 280
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	79, 257
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	3 cut(s)	68, 214, 334
Hpy188I	TCNGA	4 cut(s)	152, 157, 230, 262
Hpy8I	GTNNAC	3 cut(s)	68, 214, 334
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	3 cut(s)	142, 163, 345
HpyCH4V	TGCA	2 cut(s)	63, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	74, 177, 280
Kzo9I	GATC	2 cut(s)	145, 152
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	2 cut(s)	67, 293
Lsp1109I	GCAGC	1 cut(s)	178
MaeIII	GTNAC	4 cut(s)	23, 131, 163, 339
MalI	GATC	2 cut(s)	147, 154
MboI	GATC	2 cut(s)	145, 152
MboII	GAAGA	1 cut(s)	108
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	36
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	145, 152
NlaIII	CATG	3 cut(s)	74, 177, 280
NmuCI	GTSAC	2 cut(s)	163, 339
PctI	GAATGC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	193, 291
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	2 cut(s)	225, 335
RsaNI	GTAC	2 cut(s)	224, 334
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	2 cut(s)	192, 290
Sau3AI	GATC	2 cut(s)	145, 152
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	5 cut(s)	10, 30, 235, 276, 326
SgeI	CNNG	9 cut(s)	41, 66, 67, 83, 186, 200, 239, 289, 320
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	4 cut(s)	122, 187, 250, 289
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	3 cut(s)	142, 163, 345
TasI	AATT	1 cut(s)	37
TatI	WGTACW	2 cut(s)	223, 333
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	3 cut(s)	65, 336, 348
TseFI	GTSAC	2 cut(s)	163, 339
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	2 cut(s)	163, 339
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	65, 336, 348
XmiI	GTMKAC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.