Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018539

Physical Location & Seq

Genomic Coordinates Reverse (-)

56754992 .. 56755342

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019787

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAAGCTCAAACGGTTGATCTTCGTTCCAACACTGTTACCAAACCAACCGAGACAATGCGGGCTGCCATGGTAGCTGCTGACGTTGATGATGATGTACTTGGTTATGCTCCAACAGCATTCCGCTTAGATAGTGAAATGGCAAAGATCATGGGGAAGGAAGCAGCAGTTTTTGTACCATCAGGCACTATGGGAAACCTCATTAGTGTGCTTGTTCATTGTGACATTAGAGGAATTGAAGTCATTCTTGGGCATAATTCCCACATTCATATCTATGAGAATGGAGGCATCTCAACAATTGGAGGATTAGGAATCCAAGAGGAGAGCTTTTGTTTCCAACCACAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

117

Amino Acids

12.47

Weight (kDa)

4.87

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	7 - 104	1.9e-32	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018539)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g22660
rosa_chinensis	RchiOBHm_Chr3g0449771
rosa_laevigata	RLG00000019787
rosa_multiflora	Rmu_sc0011575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105710
rosa_samantha	Rh2AG404500 Rh2BG414500 Rh2CG390800 Rh2DG424200
rosa_wichuraiana	Rw2G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	61, 124
AfaI	GTAC	2 cut(s)	99, 177
AgsI	TTSAA	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	8, 77, 327
AluI	AGCT	3 cut(s)	8, 77, 327
Alw26I	GTCTC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	65, 77, 164
Asp700I	GAANNNNTTC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	52, 64, 176
BccI	CCATC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	66, 78, 165
BlsI	GCNGC	3 cut(s)	67, 79, 166
BmsI	GCATC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	52, 64, 176
BsmAI	GTCTC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	19, 147
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	61, 124
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	19, 147
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	16, 37
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	22, 150
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	19, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 116
BstV1I	GCAGC	3 cut(s)	52, 64, 176
BtgI	CCRYGG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	98, 176
CviAII	CATG	2 cut(s)	70, 151
CviJI	RGCY	4 cut(s)	8, 65, 77, 327
CviKI_1	RGCY	4 cut(s)	8, 65, 77, 327
CviQI	GTAC	2 cut(s)	98, 176
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	21, 149
DpnII	GATC	2 cut(s)	19, 147
Eco130I	CCWWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	73, 154
FaiI	YATR	7 cut(s)	71, 108, 152, 191, 255, 270, 276
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	2 cut(s)	69, 150
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	66, 78, 165
Fsp4HI	GCNGC	3 cut(s)	66, 78, 165
GluI	GCNGC	3 cut(s)	66, 78, 165
Hin1II	CATG	2 cut(s)	73, 154
HinfI	GANTC	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	16, 37
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 116
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	73, 154
Kzo9I	GATC	2 cut(s)	19, 147
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	52, 64, 176
LweI	GCATC	1 cut(s)	297
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	37, 221
MalI	GATC	2 cut(s)	21, 149
MboI	GATC	2 cut(s)	19, 147
MboII	GAAGA	1 cut(s)	14
MfeI	CAATTG	1 cut(s)	297
MluCI	AATT	3 cut(s)	234, 256, 297
MmeI	TCCRAC	2 cut(s)	54, 137
MnlI	CCTC	5 cut(s)	209, 224, 278, 296, 313
MroXI	GAANNNNTTC	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	206, 273
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	74, 116
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	19, 147
NlaIII	CATG	2 cut(s)	73, 154
NmuCI	GTSAC	1 cut(s)	221
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	67, 79, 166
RsaI	GTAC	2 cut(s)	99, 177
RsaNI	GTAC	2 cut(s)	98, 176
RseI	CAYNNNNRTG	2 cut(s)	206, 273
SatI	GCNGC	3 cut(s)	66, 78, 165
Sau3AI	GATC	2 cut(s)	19, 147
SetI	ASST	5 cut(s)	10, 79, 87, 201, 329
SfaNI	GCATC	1 cut(s)	297
SgeI	CNNG	9 cut(s)	64, 74, 82, 113, 163, 195, 224, 260, 329
SmiMI	CAYNNNNRTG	2 cut(s)	206, 273
Sse9I	AATT	3 cut(s)	234, 256, 297
SsiI	CCGC	2 cut(s)	61, 124
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	16, 37
TaiI	ACGT	1 cut(s)	87
TasI	AATT	3 cut(s)	234, 256, 297
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	312
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	65, 77, 164
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	17, 206, 257
TspRI	CASTG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.