Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018539

Physical Location & Seq

Genomic Coordinates Reverse (-)

60314841 .. 60325432

Gene Structure 10592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG404500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCGGGCTGCCATGGCAACTGCTGACGGTGATGATGATGTACTTGGCTATGCTCCAACAACATTCCGCTTGGATAGTGAAATGGCAAAGATCATGGGGAAGGAAGCAGCAGTTTTTGTACCATCAGACACTATGGGAAACCTCATTAGTGTGCTTGTTCATTGTGACATTAGAGGAATTGAATATTGTAGAGAATTAGTGGGAGAGGTAGCCAAGAAACAAGGCTTAAAGCTTCATATTGATGGTGCCGGCGCGCATTTTCAGTGCATCTGTTGTAACTTGCACTTGGTGTTCCAGTTAATAGACTTGTGCAAGCCGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTGTTGGTGCTCCGGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTAGTAAGAAAGCTCAGGAAAACTTTAGGTGGTGGAATGAGACAGGTTGGTATCCTTTGTGCGGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGATAGACTAAATCAAATCAAAGGATTAAGGGTGGATACTGAGACGGTTGAGACAAATATTGAGTGTATTTTACTGTATGTTCATATTCTTGAGGGATCAACAACCACCGCAGAAACGTTGTATAAGAAATTGGAAGAATATGGTATACTTACGATGAAAGAAAGCTCATCAAGCATTAGGATTGTTCTCCACCACCAAATTTCAGCAAGTGATGAGCAGTACACTTTGCCCTGCTTTCAGAAAGCTCTGATCGGAGCCCCTGAAGAAAATGGACACCAGAAATATGGTAGCCTGTACTGTGGACATGCGGTCAGACAGAGACACAGCCAGCCGAAGCTATGTGAGCTGCCATGGCAGCTGCTGAGGTTGATGATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

303

Amino Acids

33.68

Weight (kDa)

7.98

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	1 - 62	7.4e-14	Beta-eliminating lyase
Beta_elim_lyase	PF01212	135 - 198	1.3e-12	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018539)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g22660
rosa_chinensis	RchiOBHm_Chr3g0449771
rosa_laevigata	RLG00000019787
rosa_multiflora	Rmu_sc0011575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105710
rosa_samantha	Rh2AG404500 Rh2BG414500 Rh2CG390800 Rh2DG424200
rosa_wichuraiana	Rw2G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	676
AccII	CGCG	1 cut(s)	254
AciI	CCGC	6 cut(s)	4, 67, 317, 458, 639, 839
AclI	AACGTT	1 cut(s)	647
AclWI	GGATC	4 cut(s)	375, 377, 390, 634
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	1 cut(s)	813
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	4 cut(s)	42, 120, 752, 827
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	182
AhdI	GACNNNNNGTC	1 cut(s)	839
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	5 cut(s)	343, 430, 566, 575, 844
AlwI	GGATC	4 cut(s)	375, 377, 390, 634
AlwNI	CAGNNNCTG	1 cut(s)	892
ApeKI	GCWGC	5 cut(s)	8, 107, 877, 886, 889
ApoI	RAATTY	1 cut(s)	729
AspLEI	GCGC	2 cut(s)	254, 256
AsuHPI	GGTGA	2 cut(s)	41, 515
BamHI	GGATCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	790
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	893
BbvI	GCAGC	4 cut(s)	119, 864, 876, 898
BccI	CCATC	2 cut(s)	130, 236
BciVI	GTATCC	2 cut(s)	458, 559
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	5 cut(s)	343, 430, 566, 575, 844
BfuI	GTATCC	2 cut(s)	458, 559
BisI	GCNGC	6 cut(s)	9, 108, 317, 878, 887, 890
BlsI	GCNGC	6 cut(s)	10, 109, 318, 879, 888, 891
BmeRI	GACNNNNNGTC	1 cut(s)	839
BmiI	GGNNCC	3 cut(s)	247, 384, 787
BmsI	GCATC	1 cut(s)	276
Bpu10I	CCTNAGC	2 cut(s)	410, 893
BpuEI	CTTGAG	2 cut(s)	518, 641
BsaJI	CCNNGG	2 cut(s)	12, 881
BsaWI	WCCGGW	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	12, 881
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	3 cut(s)	424, 561, 884
BseNI	ACTGG	1 cut(s)	295
BsePI	GCGCGC	1 cut(s)	252
BseXI	GCAGC	4 cut(s)	119, 864, 876, 898
Bsh1236I	CGCG	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	249, 361
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	5 cut(s)	343, 430, 566, 575, 844
BsmBI	CGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	360, 790
Bsp143I	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
Bsp19I	CCATGG	2 cut(s)	12, 881
BspACI	CCGC	6 cut(s)	4, 67, 317, 458, 639, 839
BspCNI	CTCAG	3 cut(s)	423, 562, 885
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	247, 384, 787
BspPI	GGATC	4 cut(s)	375, 377, 390, 634
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	12, 881
BssHII	GCGCGC	1 cut(s)	252
BssMI	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
BssNAI	GTATAC	1 cut(s)	677
BssT1I	CCWWGG	2 cut(s)	12, 881
Bst1107I	GTATAC	1 cut(s)	677
Bst4CI	ACNGT	4 cut(s)	29, 577, 606, 830
BstC8I	GCNNGC	5 cut(s)	6, 250, 254, 314, 860
BstDEI	CTNAG	4 cut(s)	410, 519, 570, 893
BstDSI	CCRYGG	2 cut(s)	12, 881
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	254, 256
BstKTI	GATC	6 cut(s)	93, 370, 385, 508, 629, 783
BstMAI	GTCTC	5 cut(s)	343, 430, 566, 575, 844
BstMBI	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 470, 702, 874, 883, 886
BstNSI	RCATGY	1 cut(s)	839
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	119, 864, 876, 898
BstX2I	RGATCY	2 cut(s)	367, 382
BstXI	CCANNNNNNTGG	1 cut(s)	815
BstYI	RGATCY	2 cut(s)	367, 382
BstZ17I	GTATAC	1 cut(s)	677
BsuI	GTATCC	2 cut(s)	458, 559
BtgI	CCRYGG	2 cut(s)	12, 881
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	5 cut(s)	6, 250, 254, 314, 860
CaiI	CAGNNNCTG	1 cut(s)	892
CfoI	GCGC	2 cut(s)	254, 256
Cfr10I	RCCGGY	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	41, 119, 751, 826
CviAII	CATG	5 cut(s)	13, 94, 479, 836, 882
CviQI	GTAC	4 cut(s)	41, 119, 751, 826
DdeI	CTNAG	4 cut(s)	410, 519, 570, 893
DpnI	GATC	6 cut(s)	92, 369, 384, 507, 628, 782
DpnII	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
DraIII	CACNNNGTG	1 cut(s)	289
DriI	GACNNNNNGTC	1 cut(s)	839
Eam1105I	GACNNNNNGTC	1 cut(s)	839
Eco130I	CCWWGG	2 cut(s)	12, 881
Eco24I	GRGCYC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	813
EcoT14I	CCWWGG	2 cut(s)	12, 881
EcoT38I	GRGCYC	1 cut(s)	790
ErhI	CCWWGG	2 cut(s)	12, 881
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	5 cut(s)	16, 97, 482, 839, 885
FatI	CATG	5 cut(s)	12, 93, 478, 835, 881
FauI	CCCGC	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	676
Fnu4HI	GCNGC	6 cut(s)	9, 108, 317, 878, 887, 890
FriOI	GRGCYC	1 cut(s)	790
Fsp4HI	GCNGC	6 cut(s)	9, 108, 317, 878, 887, 890
GlaI	GCGC	2 cut(s)	253, 255
GluI	GCNGC	6 cut(s)	9, 108, 317, 878, 887, 890
HapII	CCGG	2 cut(s)	249, 361
HhaI	GCGC	2 cut(s)	254, 256
Hin1II	CATG	5 cut(s)	16, 97, 482, 839, 885
Hin6I	GCGC	2 cut(s)	252, 254
HinP1I	GCGC	2 cut(s)	252, 254
HindIII	AAGCTT	3 cut(s)	230, 390, 494
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	249, 361
HphI	GGTGA	2 cut(s)	41, 515
Hpy166II	GTNNAC	3 cut(s)	677, 753, 833
Hpy188I	TCNGA	6 cut(s)	127, 387, 771, 780, 785, 845
Hpy188III	TCNNGA	2 cut(s)	412, 620
Hpy8I	GTNNAC	3 cut(s)	677, 753, 833
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	4 cut(s)	29, 577, 606, 830
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	4 cut(s)	267, 283, 312, 491
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 470, 702, 874, 883, 886
HpyF3I	CTNAG	4 cut(s)	410, 519, 570, 893
HpySE526I	ACGT	1 cut(s)	647
Hsp92II	CATG	5 cut(s)	16, 97, 482, 839, 885
HspAI	GCGC	2 cut(s)	252, 254
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
LmnI	GCTCC	3 cut(s)	58, 363, 785
Lsp1109I	GCAGC	4 cut(s)	119, 864, 876, 898
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	2 cut(s)	164, 275
MalI	GATC	6 cut(s)	92, 369, 384, 507, 628, 782
MboI	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
MboII	GAAGA	2 cut(s)	677, 806
MflI	RGATCY	2 cut(s)	367, 382
MhlI	GDGCHC	2 cut(s)	360, 790
MluCI	AATT	4 cut(s)	177, 194, 659, 729
MmeI	TCCRAC	3 cut(s)	80, 345, 360
MnlI	CCTC	6 cut(s)	152, 167, 199, 493, 616, 888
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	3 cut(s)	227, 299, 557
MslI	CAYNNNNRTG	3 cut(s)	149, 240, 483
MspA1I	CMGCKG	2 cut(s)	319, 889
MspI	CCGG	2 cut(s)	249, 361
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	6 cut(s)	14, 470, 702, 874, 883, 886
NaeI	GCCGGC	1 cut(s)	250
NcoI	CCATGG	2 cut(s)	12, 881
NdeII	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	5 cut(s)	16, 97, 482, 839, 885
NlaIV	GGNNCC	3 cut(s)	247, 384, 787
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	839
PauI	GCGCGC	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	6 cut(s)	10, 109, 318, 879, 888, 891
Psp1406I	AACGTT	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	247, 384, 787
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	2 cut(s)	367, 382
PteI	GCGCGC	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	889
RsaI	GTAC	4 cut(s)	42, 120, 752, 827
RsaNI	GTAC	4 cut(s)	41, 119, 751, 826
RseI	CAYNNNNRTG	3 cut(s)	149, 240, 483
SaqAI	TTAA	3 cut(s)	227, 299, 557
SatI	GCNGC	6 cut(s)	9, 108, 317, 878, 887, 890
Sau3AI	GATC	6 cut(s)	90, 367, 382, 505, 626, 780
SduI	GDGCHC	2 cut(s)	360, 790
SfaNI	GCATC	1 cut(s)	276
SmiMI	CAYNNNNRTG	3 cut(s)	149, 240, 483
SmlI	CTYRAG	2 cut(s)	497, 620
SmoI	CTYRAG	2 cut(s)	497, 620
Sse9I	AATT	4 cut(s)	177, 194, 659, 729
SsiI	CCGC	6 cut(s)	4, 67, 317, 458, 639, 839
SspI	AATATT	2 cut(s)	185, 589
StyI	CCWWGG	2 cut(s)	12, 881
TaaI	ACNGT	4 cut(s)	29, 577, 606, 830
TaiI	ACGT	1 cut(s)	650
TasI	AATT	4 cut(s)	177, 194, 659, 729
TatI	WGTACW	3 cut(s)	40, 750, 825
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	227, 299, 557
Tru9I	TTAA	3 cut(s)	227, 299, 557
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	5 cut(s)	8, 107, 877, 886, 889
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	6 cut(s)	149, 224, 384, 495, 602, 701
TspRI	CASTG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	729
XceI	RCATGY	1 cut(s)	839
XmiI	GTMKAC	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.