Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018539

Physical Location & Seq

Genomic Coordinates Reverse (-)

53289714 .. 53303252

Gene Structure 13539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG390800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTAATGGGGAGTGTAAATCCTATAATTAAAATGATAACTCAAACGGTTGATCTCCATTCCAACACTGTTACCAAACCAACCGAGACAATGCGGGCTGCCATGGCAACTGCTGACGGTGATGATGATGTACTTGGCTATGCTCCAACAACATTCCGCTTGGATAGTGAAATGGCAAAGATCATGGGGAAGGAAGCAGCACTGCGGTGGCACTTGGTGTTCCAGTTAATAGACTTGTGCAAGCCGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTGTTGGTGCTCCGGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTAGTAAGAAAGCTCAGGAAAACTTTAGGTGGTGGAATGAGACAGGTTGGTATCCTTTGTGCGGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGATAGACTAAATCAAATCAAAGGATTAAGGGTGGATACTGAGACGGTTGAGACAAATATTGAGTGTATTTTACTGTATGTTCATATTCTTGAGGGATCAACAACCACCGCAGAAACGTTGTATAAGAAATTGGAAGAATATGGTATACTTACGATGAAAGAAAGCTCATCAAGCATTAGGATTGTTCTCCACCACCAAATTTCAGCAAGTGATGAGCAGTACACTTTGCCCTGCTTTCAGAAAGCTCTGATCGGAGCCCCTGAAGAAAATGGACACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

246

Amino Acids

27.28

Weight (kDa)

7.09

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	18 - 68	8e-12	Beta-eliminating lyase
Beta_elim_lyase	PF01212	111 - 174	9.9e-13	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018539)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g22660
rosa_chinensis	RchiOBHm_Chr3g0449771
rosa_laevigata	RLG00000019787
rosa_multiflora	Rmu_sc0011575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105710
rosa_samantha	Rh2AG404500 Rh2BG414500 Rh2CG390800 Rh2DG424200
rosa_wichuraiana	Rw2G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	604
AciI	CCGC	6 cut(s)	94, 157, 205, 245, 386, 567
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	4 cut(s)	303, 305, 318, 562
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	741
AdeI	CACNNNGTG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	132, 680
AfiI	CCNNNNNNNGG	1 cut(s)	385
AleI	CACNNNNGTG	1 cut(s)	205
AluBI	AGCT	6 cut(s)	320, 337, 424, 446, 624, 704
AluI	AGCT	6 cut(s)	320, 337, 424, 446, 624, 704
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	5 cut(s)	80, 271, 358, 494, 503
AlwI	GGATC	4 cut(s)	303, 305, 318, 562
ApeKI	GCWGC	2 cut(s)	98, 197
ApoI	RAATTY	1 cut(s)	657
AsuHPI	GGTGA	2 cut(s)	131, 443
BamHI	GGATCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	718
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	85, 209
BciVI	GTATCC	2 cut(s)	386, 487
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	5 cut(s)	80, 271, 358, 494, 503
BfuI	GTATCC	2 cut(s)	386, 487
BisI	GCNGC	3 cut(s)	99, 198, 245
BlsI	GCNGC	3 cut(s)	100, 199, 246
BmiI	GGNNCC	2 cut(s)	312, 715
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	446, 569
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	223, 736
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	352, 489
BseNI	ACTGG	2 cut(s)	223, 736
BseXI	GCAGC	2 cut(s)	85, 209
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	5 cut(s)	80, 271, 358, 494, 503
BsmBI	CGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	2 cut(s)	288, 718
Bsp143I	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	6 cut(s)	94, 157, 205, 245, 386, 567
BspCNI	CTCAG	2 cut(s)	351, 490
BspLI	GGNNCC	2 cut(s)	312, 715
BspPI	GGATC	4 cut(s)	303, 305, 318, 562
BsrI	ACTGG	2 cut(s)	223, 736
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
BssNAI	GTATAC	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	102
Bst1107I	GTATAC	1 cut(s)	605
Bst4CI	ACNGT	5 cut(s)	49, 70, 119, 505, 534
BstC8I	GCNNGC	2 cut(s)	96, 242
BstDEI	CTNAG	3 cut(s)	338, 447, 498
BstDSI	CCRYGG	1 cut(s)	102
BstKTI	GATC	7 cut(s)	55, 183, 298, 313, 436, 557, 711
BstMAI	GTCTC	5 cut(s)	80, 271, 358, 494, 503
BstMBI	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 398, 630
BstV1I	GCAGC	2 cut(s)	85, 209
BstX2I	RGATCY	2 cut(s)	295, 310
BstYI	RGATCY	2 cut(s)	295, 310
BstZ17I	GTATAC	1 cut(s)	605
BsuI	GTATCC	2 cut(s)	386, 487
BtgI	CCRYGG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	66, 200
Cac8I	GCNNGC	2 cut(s)	96, 242
Csp6I	GTAC	2 cut(s)	131, 679
CviAII	CATG	3 cut(s)	103, 184, 407
CviQI	GTAC	2 cut(s)	131, 679
DdeI	CTNAG	3 cut(s)	338, 447, 498
DpnI	GATC	7 cut(s)	54, 182, 297, 312, 435, 556, 710
DpnII	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
DraIII	CACNNNGTG	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	3 cut(s)	106, 187, 410
FatI	CATG	3 cut(s)	102, 183, 406
FauI	CCCGC	2 cut(s)	87, 379
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	99, 198, 245
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	3 cut(s)	99, 198, 245
GluI	GCNGC	3 cut(s)	99, 198, 245
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	3 cut(s)	106, 187, 410
HindIII	AAGCTT	2 cut(s)	318, 422
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	2 cut(s)	131, 443
Hpy166II	GTNNAC	2 cut(s)	605, 681
Hpy188I	TCNGA	4 cut(s)	315, 699, 708, 713
Hpy188III	TCNNGA	2 cut(s)	340, 548
Hpy8I	GTNNAC	2 cut(s)	605, 681
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	5 cut(s)	49, 70, 119, 505, 534
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	2 cut(s)	240, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 398, 630
HpyF3I	CTNAG	3 cut(s)	338, 447, 498
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	3 cut(s)	106, 187, 410
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
LmnI	GCTCC	3 cut(s)	148, 291, 713
LpnPI	CCDG	6 cut(s)	236, 302, 325, 353, 703, 732
Lsp1109I	GCAGC	2 cut(s)	85, 209
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	7 cut(s)	54, 182, 297, 312, 435, 556, 710
MboI	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
MboII	GAAGA	2 cut(s)	605, 734
MflI	RGATCY	2 cut(s)	295, 310
MhlI	GDGCHC	2 cut(s)	288, 718
MluCI	AATT	3 cut(s)	27, 587, 657
MmeI	TCCRAC	4 cut(s)	87, 170, 273, 288
MnlI	CCTC	2 cut(s)	421, 544
MseI	TTAA	4 cut(s)	5, 30, 227, 485
MslI	CAYNNNNRTG	2 cut(s)	205, 411
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	104, 398, 630
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
NlaIII	CATG	3 cut(s)	106, 187, 410
NlaIV	GGNNCC	2 cut(s)	312, 715
OliI	CACNNNNGTG	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	100, 199, 246
Psp1406I	AACGTT	1 cut(s)	575
PspN4I	GGNNCC	2 cut(s)	312, 715
PsuI	RGATCY	2 cut(s)	295, 310
RsaI	GTAC	2 cut(s)	132, 680
RsaNI	GTAC	2 cut(s)	131, 679
RseI	CAYNNNNRTG	2 cut(s)	205, 411
SaqAI	TTAA	4 cut(s)	5, 30, 227, 485
SatI	GCNGC	3 cut(s)	99, 198, 245
Sau3AI	GATC	7 cut(s)	52, 180, 295, 310, 433, 554, 708
SduI	GDGCHC	2 cut(s)	288, 718
SmiMI	CAYNNNNRTG	2 cut(s)	205, 411
SmlI	CTYRAG	2 cut(s)	425, 548
SmoI	CTYRAG	2 cut(s)	425, 548
Sse9I	AATT	3 cut(s)	27, 587, 657
SsiI	CCGC	6 cut(s)	94, 157, 205, 245, 386, 567
SspI	AATATT	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	5 cut(s)	49, 70, 119, 505, 534
TaiI	ACGT	1 cut(s)	578
TasI	AATT	3 cut(s)	27, 587, 657
TatI	WGTACW	2 cut(s)	130, 678
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	4 cut(s)	5, 30, 227, 485
Tru9I	TTAA	4 cut(s)	5, 30, 227, 485
TscAI	CASTG	2 cut(s)	73, 207
TseI	GCWGC	2 cut(s)	98, 197
TspDTI	ATGAA	4 cut(s)	312, 423, 530, 629
TspRI	CASTG	2 cut(s)	73, 207
XapI	RAATTY	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.