Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018539

Physical Location & Seq

Genomic Coordinates Reverse (-)

54178667 .. 54189146

Gene Structure 10480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G033040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATAACTCAAACGGTTGATATCCATTCCAACACTGTTACCAAACCAACCGAGACAATGCGGGCTGCCATGCCAACTGCTGACGTTGATGATGATGTACTTGGCTATGCTCCAACAACATTCTGCTTGGATAGTGAAATGGCAAAGATCATGGGGAAAGAAGCAGCAGTTTTTGTACCATCAGACACTATGGGAAACCTCATTAGTGTGCTTGTTCATTGTGACATTAGAGGAATTGAATATTTCATTCTTGGGCATAATTCCCACATTCATATCTATGAGAATGGAGGATTAGGAATCCAAGAGGAGAGCTTCTGCGGTGGTAGATGCTTAACTGTGGAGTATACAGACAGAGTGGGAGAGGTAGCCAAGAAACAAGGCTTAAAGCTTCATATTGATGGTGCCGGCGCACTTGGTGTTCCAGTTAATAGACTTGTGCAAGCCGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTGTTGGTGCTCCGGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTACTAAGGCTAGAAAGCTCAGGAAAACTTTAGGTGGTGGAATGAGACAGGTTGGTATCCTTTGTGCGGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGATGGACTAAATCAAATCAAAGGATTAAGGGTGGATACTGAGACGGTTGAGACAAATATTGAGTGTATTTTACTGTATGTTCATATTCTTGAGGGATCAACAATCACCGCAGAAACGTTGTATAAGAAATTGGAAGAATATGGTATACTTACGATGAAAGAAAGCTCATCAAGCATTAGGATTGTTCTCCACCACCAAATTTCAGCAAGTGATGAGCAGTACACTTTGCCCTGCTTTCAGAAGCAGAGGATTTTTGTTCTTTTTTCCTCCAAATACTGGCATACTACTAATTCATCGATTTGTTATCTGTATGATTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

328

Amino Acids

35.72

Weight (kDa)

6.18

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	7 - 99	2.4e-23	Beta-eliminating lyase
Beta_elim_lyase	PF01212	105 - 242	6.7e-40	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018539)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g22660
rosa_chinensis	RchiOBHm_Chr3g0449771
rosa_laevigata	RLG00000019787
rosa_multiflora	Rmu_sc0011575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105710
rosa_samantha	Rh2AG404500 Rh2BG414500 Rh2CG390800 Rh2DG424200
rosa_wichuraiana	Rw2G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	939
AccI	GTMKAC	2 cut(s)	344, 808
AciI	CCGC	5 cut(s)	61, 318, 444, 590, 771
AclI	AACGTT	1 cut(s)	779
AclWI	GGATC	4 cut(s)	502, 504, 517, 766
AcsI	RAATTY	1 cut(s)	861
AdeI	CACNNNGTG	1 cut(s)	416
AfaI	GTAC	3 cut(s)	99, 177, 884
AfiI	CCNNNNNNNGG	2 cut(s)	589, 939
AgsI	TTSAA	2 cut(s)	239, 982
AluBI	AGCT	7 cut(s)	312, 388, 519, 541, 628, 650, 828
AluI	AGCT	7 cut(s)	312, 388, 519, 541, 628, 650, 828
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	5 cut(s)	47, 470, 562, 698, 707
AlwI	GGATC	4 cut(s)	502, 504, 517, 766
ApeKI	GCWGC	2 cut(s)	65, 164
ApoI	RAATTY	1 cut(s)	861
AspLEI	GCGC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	647, 760
BamHI	GGATCC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	52, 176
BccI	CCATC	3 cut(s)	187, 392, 659
BciVI	GTATCC	2 cut(s)	590, 691
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	5 cut(s)	47, 470, 562, 698, 707
BfaI	CTAG	1 cut(s)	534
BfuI	GTATCC	2 cut(s)	590, 691
BisI	GCNGC	3 cut(s)	66, 165, 444
BlsI	GCNGC	3 cut(s)	67, 166, 445
BmiI	GGNNCC	2 cut(s)	403, 511
BmsI	GCATC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	650, 773
Bsa29I	ATCGAT	1 cut(s)	959
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	589, 939
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	422, 944
BseCI	ATCGAT	1 cut(s)	959
BseLI	CCNNNNNNNGG	2 cut(s)	589, 939
BseMII	CTCAG	2 cut(s)	556, 693
BseNI	ACTGG	2 cut(s)	422, 944
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	52, 176
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	959
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	405, 488
BslI	CCNNNNNNNGG	2 cut(s)	589, 939
BsmAI	GTCTC	5 cut(s)	47, 470, 562, 698, 707
BsmBI	CGTCTC	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	5 cut(s)	147, 494, 509, 637, 758
BspACI	CCGC	5 cut(s)	61, 318, 444, 590, 771
BspCNI	CTCAG	2 cut(s)	555, 694
BspDI	ATCGAT	1 cut(s)	959
BspLI	GGNNCC	2 cut(s)	403, 511
BspPI	GGATC	4 cut(s)	502, 504, 517, 766
BspT107I	GGYRCC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	422, 944
BssAI	RCCGGY	1 cut(s)	404
BssMI	GATC	5 cut(s)	147, 494, 509, 637, 758
BssNAI	GTATAC	2 cut(s)	345, 809
Bst1107I	GTATAC	2 cut(s)	345, 809
Bst4CI	ACNGT	5 cut(s)	16, 37, 337, 709, 738
BstC8I	GCNNGC	3 cut(s)	63, 406, 441
BstDEI	CTNAG	4 cut(s)	528, 542, 651, 702
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	5 cut(s)	150, 497, 512, 640, 761
BstMAI	GTCTC	5 cut(s)	47, 470, 562, 698, 707
BstMBI	GATC	5 cut(s)	147, 494, 509, 637, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 834
BstV1I	GCAGC	2 cut(s)	52, 176
BstX2I	RGATCY	2 cut(s)	494, 509
BstYI	RGATCY	2 cut(s)	494, 509
BstZ17I	GTATAC	2 cut(s)	345, 809
Bsu15I	ATCGAT	1 cut(s)	959
BsuI	GTATCC	2 cut(s)	590, 691
BsuTUI	ATCGAT	1 cut(s)	959
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	63, 406, 441
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	404
ClaI	ATCGAT	1 cut(s)	959
Csp6I	GTAC	3 cut(s)	98, 176, 883
CviAII	CATG	3 cut(s)	70, 151, 611
CviQI	GTAC	3 cut(s)	98, 176, 883
DdeI	CTNAG	4 cut(s)	528, 542, 651, 702
DpnI	GATC	5 cut(s)	149, 496, 511, 639, 760
DpnII	GATC	5 cut(s)	147, 494, 509, 637, 758
DraIII	CACNNNGTG	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	3 cut(s)	73, 154, 614
FatI	CATG	3 cut(s)	69, 150, 610
FauI	CCCGC	2 cut(s)	54, 583
FbaI	TGATCA	1 cut(s)	637
FblI	GTMKAC	2 cut(s)	344, 808
Fnu4HI	GCNGC	3 cut(s)	66, 165, 444
Fsp4HI	GCNGC	3 cut(s)	66, 165, 444
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	3 cut(s)	66, 165, 444
HapII	CCGG	2 cut(s)	405, 488
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	3 cut(s)	73, 154, 614
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HindIII	AAGCTT	3 cut(s)	386, 517, 626
HinfI	GANTC	2 cut(s)	297, 449
HpaII	CCGG	2 cut(s)	405, 488
HphI	GGTGA	2 cut(s)	647, 760
Hpy166II	GTNNAC	3 cut(s)	345, 809, 885
Hpy188I	TCNGA	3 cut(s)	184, 514, 903
Hpy188III	TCNNGA	2 cut(s)	544, 752
Hpy8I	GTNNAC	3 cut(s)	345, 809, 885
HpyCH4III	ACNGT	5 cut(s)	16, 37, 337, 709, 738
HpyCH4IV	ACGT	2 cut(s)	84, 779
HpyCH4V	TGCA	2 cut(s)	439, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 834
HpyF3I	CTNAG	4 cut(s)	528, 542, 651, 702
HpySE526I	ACGT	2 cut(s)	84, 779
Hsp92II	CATG	3 cut(s)	73, 154, 614
HspAI	GCGC	1 cut(s)	408
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	5 cut(s)	147, 494, 509, 637, 758
LmnI	GCTCC	2 cut(s)	115, 490
LpnPI	CCDG	7 cut(s)	418, 435, 501, 529, 557, 907, 925
Lsp1109I	GCAGC	2 cut(s)	52, 176
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	2 cut(s)	84, 779
MaeIII	GTNAC	2 cut(s)	37, 221
MalI	GATC	5 cut(s)	149, 496, 511, 639, 760
MboI	GATC	5 cut(s)	147, 494, 509, 637, 758
MboII	GAAGA	1 cut(s)	809
MflI	RGATCY	2 cut(s)	494, 509
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	5 cut(s)	234, 259, 791, 861, 952
MmeI	TCCRAC	4 cut(s)	54, 137, 472, 487
MnlI	CCTC	9 cut(s)	209, 224, 281, 298, 355, 625, 748, 903, 940
MroNI	GCCGGC	1 cut(s)	404
MseI	TTAA	4 cut(s)	332, 383, 426, 689
MslI	CAYNNNNRTG	4 cut(s)	206, 276, 396, 615
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	2 cut(s)	405, 488
MwoI	GCNNNNNNNGC	2 cut(s)	602, 834
NaeI	GCCGGC	1 cut(s)	406
NdeII	GATC	5 cut(s)	147, 494, 509, 637, 758
NgoMIV	GCCGGC	1 cut(s)	404
NlaIII	CATG	3 cut(s)	73, 154, 614
NlaIV	GGNNCC	2 cut(s)	403, 511
NmuCI	GTSAC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	297, 449
PflMI	CCANNNNNTGG	1 cut(s)	939
PkrI	GCNGC	3 cut(s)	67, 166, 445
Psp1406I	AACGTT	1 cut(s)	779
PspN4I	GGNNCC	2 cut(s)	403, 511
PsuI	RGATCY	2 cut(s)	494, 509
RsaI	GTAC	3 cut(s)	99, 177, 884
RsaNI	GTAC	3 cut(s)	98, 176, 883
RseI	CAYNNNNRTG	4 cut(s)	206, 276, 396, 615
SaqAI	TTAA	4 cut(s)	332, 383, 426, 689
SatI	GCNGC	3 cut(s)	66, 165, 444
Sau3AI	GATC	5 cut(s)	147, 494, 509, 637, 758
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	1 cut(s)	317
SmiMI	CAYNNNNRTG	4 cut(s)	206, 276, 396, 615
SmlI	CTYRAG	2 cut(s)	629, 752
SmoI	CTYRAG	2 cut(s)	629, 752
Sse9I	AATT	5 cut(s)	234, 259, 791, 861, 952
SsiI	CCGC	5 cut(s)	61, 318, 444, 590, 771
SspI	AATATT	2 cut(s)	242, 721
SspMI	CTAG	1 cut(s)	534
TaaI	ACNGT	5 cut(s)	16, 37, 337, 709, 738
TaiI	ACGT	2 cut(s)	87, 782
TaqI	TCGA	1 cut(s)	959
TasI	AATT	5 cut(s)	234, 259, 791, 861, 952
TatI	WGTACW	2 cut(s)	97, 882
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	297, 449
Tru1I	TTAA	4 cut(s)	332, 383, 426, 689
Tru9I	TTAA	4 cut(s)	332, 383, 426, 689
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	65, 164
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	9 cut(s)	206, 235, 260, 380, 511, 627, 734, 833, 945
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	939
XapI	RAATTY	1 cut(s)	861
XmiI	GTMKAC	2 cut(s)	344, 808
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.