Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018539

Physical Location & Seq

Genomic Coordinates Reverse (-)

61479880 .. 61489593

Gene Structure 9714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG424200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCGGGCTGCCATGGCAACTACTGACGTTGATGATGATGTACTTGGCTATGCTCCAACAACATTCCGCTTGGATAGTGAAATGGCAAAGATCATGGGGAAAGAAGCAGCAGTTTTTGTACCATCAGACACTATGGGAAACCTCATTAGTGTGCTTGTTCATTGTGACATTAGAGGAATTGAATATTGTAGAGAATTCTGCGGTGGTAGATGCTTAACTGTGGAGTATACAGACAGAGTGGGAGAGGTAGCCAAGAAACAAGGCTTAAAGCTTCATATTGATGGTGCCGGCGCGCATTTTCAGTGCATCTGTTGTAACTTGCACTTGGTGTTCCAGTTAATAGACTTGTGCAAGCCGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTGTTGGTGCTCCGGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTACTAAAGTACTATGGAGATTTTATGCGTGGTGGTGGAATGAGACAGGTTGGTATCCTTTGTGCGGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGATGGACTAAATCAAATCAAAGGATTAAGGGTGGATACTGAGACGGTTGAGACAAATATTGAGTGTATTTTAGTTATACCAATGTTCAAAACCTATATACGTACTCAACTTAATTTGATTATAATGCCAATCATTTTTAACGTGACTCTGCAATTGAAAGTTAACGATTTTGAATTTGTTTCTACCACAAGATACACTTTTATCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

260

Amino Acids

29.07

Weight (kDa)

7.53

Isoelectric Point (pI)

20.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	1 - 62	4e-14	Beta-eliminating lyase
Beta_elim_lyase	PF01212	154 - 212	1.7e-10	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018539)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g22660
rosa_chinensis	RchiOBHm_Chr3g0449771
rosa_laevigata	RLG00000019787
rosa_multiflora	Rmu_sc0011575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105710
rosa_samantha	Rh2AG404500 Rh2BG414500 Rh2CG390800 Rh2DG424200
rosa_wichuraiana	Rw2G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	293
AciI	CCGC	5 cut(s)	4, 67, 201, 356, 500
AclWI	GGATC	3 cut(s)	414, 416, 429
AcsI	RAATTY	2 cut(s)	194, 746
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	4 cut(s)	42, 120, 446, 676
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	182, 661, 730, 746
AluBI	AGCT	4 cut(s)	271, 431, 538, 560
AluI	AGCT	4 cut(s)	271, 431, 538, 560
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	4 cut(s)	382, 472, 608, 617
AlwI	GGATC	3 cut(s)	414, 416, 429
ApeKI	GCWGC	2 cut(s)	8, 107
ApoI	RAATTY	2 cut(s)	194, 746
AspLEI	GCGC	2 cut(s)	293, 295
AsuHPI	GGTGA	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	3 cut(s)	130, 275, 569
BciVI	GTATCC	2 cut(s)	500, 601
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	4 cut(s)	382, 472, 608, 617
BfuI	GTATCC	2 cut(s)	500, 601
BisI	GCNGC	3 cut(s)	9, 108, 356
BlsI	GCNGC	3 cut(s)	10, 109, 357
BmcAI	AGTACT	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	286, 423
BmsI	GCATC	2 cut(s)	200, 315
BpuEI	CTTGAG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	334
BsePI	GCGCGC	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	288, 400
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	4 cut(s)	382, 472, 608, 617
BsmBI	CGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	90, 406, 421, 547
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	5 cut(s)	4, 67, 201, 356, 500
BspCNI	CTCAG	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	2 cut(s)	286, 423
BspPI	GGATC	3 cut(s)	414, 416, 429
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	12
BssHII	GCGCGC	1 cut(s)	291
BssMI	GATC	4 cut(s)	90, 406, 421, 547
BssNAI	GTATAC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	220, 619
BstBAI	YACGTR	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	6, 289, 293, 353
BstDEI	CTNAG	2 cut(s)	561, 612
BstDSI	CCRYGG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	293, 295
BstKTI	GATC	4 cut(s)	93, 409, 424, 550
BstMAI	GTCTC	4 cut(s)	382, 472, 608, 617
BstMBI	GATC	4 cut(s)	90, 406, 421, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 512
BstSNI	TACGTA	1 cut(s)	674
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	406, 421
BstYI	RGATCY	2 cut(s)	406, 421
BstZ17I	GTATAC	1 cut(s)	228
BsuI	GTATCC	2 cut(s)	500, 601
BtgI	CCRYGG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	4 cut(s)	6, 289, 293, 353
CfoI	GCGC	2 cut(s)	293, 295
Cfr10I	RCCGGY	1 cut(s)	287
Csp6I	GTAC	4 cut(s)	41, 119, 445, 675
CviAII	CATG	3 cut(s)	13, 94, 521
CviQI	GTAC	4 cut(s)	41, 119, 445, 675
DdeI	CTNAG	2 cut(s)	561, 612
DpnI	GATC	4 cut(s)	92, 408, 423, 549
DpnII	GATC	4 cut(s)	90, 406, 421, 547
DraIII	CACNNNGTG	1 cut(s)	328
Eco105I	TACGTA	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	3 cut(s)	16, 97, 524
FalI	AAGNNNNNCTT	1 cut(s)	754
FatI	CATG	3 cut(s)	12, 93, 520
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	9, 108, 356
Fsp4HI	GCNGC	3 cut(s)	9, 108, 356
GlaI	GCGC	2 cut(s)	292, 294
GluI	GCNGC	3 cut(s)	9, 108, 356
HapII	CCGG	2 cut(s)	288, 400
HhaI	GCGC	2 cut(s)	293, 295
Hin1II	CATG	3 cut(s)	16, 97, 524
Hin6I	GCGC	2 cut(s)	291, 293
HinP1I	GCGC	2 cut(s)	291, 293
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	3 cut(s)	269, 429, 536
HinfI	GANTC	2 cut(s)	361, 718
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	2 cut(s)	288, 400
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	228, 736
Hpy188I	TCNGA	3 cut(s)	127, 426, 779
Hpy8I	GTNNAC	2 cut(s)	228, 736
HpyCH4III	ACNGT	2 cut(s)	220, 619
HpyCH4IV	ACGT	3 cut(s)	27, 673, 714
HpyCH4V	TGCA	5 cut(s)	306, 322, 351, 533, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 512
HpyF3I	CTNAG	2 cut(s)	561, 612
HpySE526I	ACGT	3 cut(s)	27, 673, 714
Hsp92II	CATG	3 cut(s)	16, 97, 524
HspAI	GCGC	2 cut(s)	291, 293
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	4 cut(s)	90, 406, 421, 547
LmnI	GCTCC	2 cut(s)	58, 402
LpnPI	CCDG	4 cut(s)	301, 347, 413, 467
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	200, 315
MaeII	ACGT	3 cut(s)	27, 673, 714
MaeIII	GTNAC	3 cut(s)	164, 314, 715
MalI	GATC	4 cut(s)	92, 408, 423, 549
MboI	GATC	4 cut(s)	90, 406, 421, 547
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	2 cut(s)	406, 421
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	5 cut(s)	177, 194, 685, 725, 746
MlyI	GAGTC	1 cut(s)	712
MmeI	TCCRAC	3 cut(s)	80, 384, 399
MnlI	CCTC	4 cut(s)	152, 167, 238, 535
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	7 cut(s)	215, 266, 338, 599, 684, 711, 735
MslI	CAYNNNNRTG	3 cut(s)	149, 279, 525
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	2 cut(s)	288, 400
MunI	CAATTG	1 cut(s)	725
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	14, 512
NaeI	GCCGGC	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	4 cut(s)	90, 406, 421, 547
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	3 cut(s)	16, 97, 524
NlaIV	GGNNCC	2 cut(s)	286, 423
NmuCI	GTSAC	2 cut(s)	164, 715
PauI	GCGCGC	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	10, 109, 357
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Ppu21I	YACGTR	1 cut(s)	674
PsiI	TTATAA	1 cut(s)	695
PspN4I	GGNNCC	2 cut(s)	286, 423
PsuI	RGATCY	2 cut(s)	406, 421
PteI	GCGCGC	1 cut(s)	291
RsaI	GTAC	4 cut(s)	42, 120, 446, 676
RsaNI	GTAC	4 cut(s)	41, 119, 445, 675
RseI	CAYNNNNRTG	3 cut(s)	149, 279, 525
SaqAI	TTAA	7 cut(s)	215, 266, 338, 599, 684, 711, 735
SatI	GCNGC	3 cut(s)	9, 108, 356
Sau3AI	GATC	4 cut(s)	90, 406, 421, 547
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	200, 315
SmiMI	CAYNNNNRTG	3 cut(s)	149, 279, 525
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SnaBI	TACGTA	1 cut(s)	674
Sse9I	AATT	5 cut(s)	177, 194, 685, 725, 746
SsiI	CCGC	5 cut(s)	4, 67, 201, 356, 500
SspI	AATATT	2 cut(s)	185, 631
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	220, 619
TaiI	ACGT	3 cut(s)	30, 676, 717
TasI	AATT	5 cut(s)	177, 194, 685, 725, 746
TatI	WGTACW	2 cut(s)	40, 444
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	7 cut(s)	215, 266, 338, 599, 684, 711, 735
Tru9I	TTAA	7 cut(s)	215, 266, 338, 599, 684, 711, 735
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	2 cut(s)	164, 715
TseI	GCWGC	2 cut(s)	8, 107
Tsp45I	GTSAC	2 cut(s)	164, 715
TspDTI	ATGAA	4 cut(s)	149, 263, 423, 537
TspRI	CASTG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	194, 746
XmiI	GTMKAC	1 cut(s)	227
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.