Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018539

Physical Location & Seq

Genomic Coordinates Reverse (-)

58556760 .. 58570302

Gene Structure 13543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG414500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGTCAACTATAACAACAATCTGCGGTGGTAGATGCTTAACTGTGGAGTATACAGACAGGGTGGGAGAGGTAGCCAAGAAACAAGGCTTAAAGCTTCATATTGATGGTGCCGGCGCGCATTTTCAGTGCATCTGTTGTAACTTGCACTTGGTGTTCCAGTTAATAGACTTGTGCAAGCCGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTGTTGGTGCTCCGGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTACTAAGAAAGCTCAGGAAAACTTTAGGTGGTGGAATGAGACAGGTTGGTATCCTTTGTGCGGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGATGGACTAAATCAAATCAAAGGATTAAGGGTGGATACTGAGACGGTTGAGACAAATATTGAGTGTATTTTAGTTATACCAATGTTCAAAACCTATATACGTACTCAACTTAATTTGATTATAATGCCAATCATTTTTAACGTGACTCTGCAATTGAAAGTTAACGATTTTGAATTTGTTTCTACCACAAGATACACTTTTATCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

201

Amino Acids

22.46

Weight (kDa)

9.27

Isoelectric Point (pI)

20.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	90 - 153	7.4e-13	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018539)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g22660
rosa_chinensis	RchiOBHm_Chr3g0449771
rosa_laevigata	RLG00000019787
rosa_multiflora	Rmu_sc0011575.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105710
rosa_samantha	Rh2AG404500 Rh2BG414500 Rh2CG390800 Rh2DG424200
rosa_wichuraiana	Rw2G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	53
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	27, 182, 323
AclWI	GGATC	3 cut(s)	240, 242, 255
AcsI	RAATTY	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	484, 553, 569
AluBI	AGCT	5 cut(s)	97, 257, 274, 361, 383
AluI	AGCT	5 cut(s)	97, 257, 274, 361, 383
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	4 cut(s)	208, 295, 431, 440
AlwI	GGATC	3 cut(s)	240, 242, 255
ApoI	RAATTY	1 cut(s)	569
AspLEI	GCGC	2 cut(s)	119, 121
AsuHPI	GGTGA	1 cut(s)	380
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	2 cut(s)	101, 392
BciVI	GTATCC	2 cut(s)	323, 424
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	4 cut(s)	208, 295, 431, 440
BfuI	GTATCC	2 cut(s)	323, 424
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	112, 249
BmsI	GCATC	2 cut(s)	26, 141
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	497
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	289, 426
BseNI	ACTGG	1 cut(s)	160
BsePI	GCGCGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	114, 226
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	4 cut(s)	208, 295, 431, 440
BsmBI	CGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	232, 247, 370
BspACI	CCGC	3 cut(s)	27, 182, 323
BspCNI	CTCAG	2 cut(s)	288, 427
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	112, 249
BspPI	GGATC	3 cut(s)	240, 242, 255
BspT107I	GGYRCC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	113
BssHII	GCGCGC	1 cut(s)	117
BssMI	GATC	3 cut(s)	232, 247, 370
BssNAI	GTATAC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	46, 442
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	115, 119, 179
BstDEI	CTNAG	4 cut(s)	266, 275, 384, 435
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	119, 121
BstKTI	GATC	3 cut(s)	235, 250, 373
BstMAI	GTCTC	4 cut(s)	208, 295, 431, 440
BstMBI	GATC	3 cut(s)	232, 247, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSNI	TACGTA	1 cut(s)	497
BstUI	CGCG	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	232, 247
BstYI	RGATCY	2 cut(s)	232, 247
BstZ17I	GTATAC	1 cut(s)	54
BsuI	GTATCC	2 cut(s)	323, 424
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	3 cut(s)	115, 119, 179
CfoI	GCGC	2 cut(s)	119, 121
Cfr10I	RCCGGY	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	498
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	9 cut(s)	77, 90, 97, 181, 257, 274, 338, 361, 383
CviKI_1	RGCY	9 cut(s)	77, 90, 97, 181, 257, 274, 338, 361, 383
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	4 cut(s)	266, 275, 384, 435
DpnI	GATC	3 cut(s)	234, 249, 372
DpnII	GATC	3 cut(s)	232, 247, 370
DraIII	CACNNNGTG	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	497
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	1 cut(s)	347
FaiI	YATR	8 cut(s)	14, 54, 102, 345, 473, 492, 494, 518
FalI	AAGNNNNNCTT	1 cut(s)	577
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GlaI	GCGC	2 cut(s)	118, 120
GluI	GCNGC	1 cut(s)	182
HapII	CCGG	2 cut(s)	114, 226
HhaI	GCGC	2 cut(s)	119, 121
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	2 cut(s)	117, 119
HinP1I	GCGC	2 cut(s)	117, 119
HincII	GTYRAC	2 cut(s)	9, 559
HindII	GTYRAC	2 cut(s)	9, 559
HindIII	AAGCTT	3 cut(s)	95, 255, 359
HinfI	GANTC	2 cut(s)	187, 541
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	2 cut(s)	114, 226
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	3 cut(s)	9, 54, 559
Hpy188I	TCNGA	2 cut(s)	252, 602
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	3 cut(s)	9, 54, 559
HpyCH4III	ACNGT	2 cut(s)	46, 442
HpyCH4IV	ACGT	2 cut(s)	496, 537
HpyCH4V	TGCA	5 cut(s)	132, 148, 177, 356, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	4 cut(s)	266, 275, 384, 435
HpySE526I	ACGT	2 cut(s)	496, 537
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	2 cut(s)	117, 119
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	232, 247, 370
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	6 cut(s)	46, 127, 173, 239, 262, 290
LweI	GCATC	2 cut(s)	26, 141
MaeII	ACGT	2 cut(s)	496, 537
MaeIII	GTNAC	2 cut(s)	140, 538
MalI	GATC	3 cut(s)	234, 249, 372
MboI	GATC	3 cut(s)	232, 247, 370
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	2 cut(s)	232, 247
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	3 cut(s)	508, 548, 569
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	210, 225
MnlI	CCTC	2 cut(s)	64, 358
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	7 cut(s)	41, 92, 164, 422, 507, 534, 558
MslI	CAYNNNNRTG	2 cut(s)	105, 348
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	2 cut(s)	114, 226
MunI	CAATTG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	335
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	3 cut(s)	232, 247, 370
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	2 cut(s)	112, 249
NmuCI	GTSAC	1 cut(s)	538
PauI	GCGCGC	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	518
PspN4I	GGNNCC	2 cut(s)	112, 249
PsuI	RGATCY	2 cut(s)	232, 247
PteI	GCGCGC	1 cut(s)	117
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
RseI	CAYNNNNRTG	2 cut(s)	105, 348
SaqAI	TTAA	7 cut(s)	41, 92, 164, 422, 507, 534, 558
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	3 cut(s)	232, 247, 370
SchI	GAGTC	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	26, 141
SmiMI	CAYNNNNRTG	2 cut(s)	105, 348
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SnaBI	TACGTA	1 cut(s)	497
Sse9I	AATT	3 cut(s)	508, 548, 569
SsiI	CCGC	3 cut(s)	27, 182, 323
SspI	AATATT	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	46, 442
TaiI	ACGT	2 cut(s)	499, 540
TasI	AATT	3 cut(s)	508, 548, 569
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	7 cut(s)	41, 92, 164, 422, 507, 534, 558
Tru9I	TTAA	7 cut(s)	41, 92, 164, 422, 507, 534, 558
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	89, 249, 360
TspRI	CASTG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.