pycom13g03360

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0013340
Physical Location & Seq
Forward (+)
2217178 .. 2221450
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1164 bp
ATGGGGACGAATTCGAAATTGGAAGGGACGTCGGCGGCGGCCATACGGCGGGACCCCTATGAGGTGCTGAGCGTTTCGAGGGATTCGACTGATCAGGAGATTAAAACCGCTTACAGAAAGCTTGCTCTCAAGTATCATCCAGACAAGAATACCAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATTTTCGTATAGCATCTTGTCCGATCCAGAGAAGAGGAGGCAGTACGACAATGCAGGGTTTGAGGCTCTTGATGCTGATGCCATGGACATGGAAATTGACTTGTCAAACCTGGGGACTGTCAATACAATGTTTGCTGCTTTGTTCAGCAAGTTGGGTGTTCCTATCAAGACGACAATTTCCGCCAATGTACTTGAAGAAGCTCTTAATGGTACAGTTACAGTCAAACCTCTCCCGATTGGAACTTCAGTTAGTGGAAAGGTGGAGAAACAGTGTGCTCACTTTTTTGGTGTAACAATCAGTGAGCAACAAGCTGAATCTGGGATTGTAGTTAGAGTTACTTCAACTGCACAAAGCAAATTTAAGTTACTTTATTTTGAGCAAGATGCCAATGGTGGTTATGGTTTAGCCTTACAGGAAGATAGTGAGAAGACAGGCAAAATAACATCTGCAGGGATGTATTTTCTGCATTTTCAATTGGCTATGGCAAAGGACCCTGAAGCTGCTTTTTTTAAGAGGTTGGAAGGTCTTCAACCCTTTGGAGACAATTTTTTTAAGACTGCTACCTATACGATTGAGGCACTTTGTGTAAGGTCTTACGAGGATACGACGGAGAAGCTTAAAGAGATTGAGGTTCAGATTTTGAGAAAGAGAAATGAACTTCGTCAATTTGAGACAGAGTACAGGAAGGCACTGCAACGCTTTCAAGAAGTGACCAACAGATACACCCAAGAAAAGCAATCTGTAGATGAGCTGCTGAAACAGAGAGACAATATCCATTCTTCTTTCACCATCACCAAGCCAAACAATATTATCATGGGTGGTGGTAGTGGTACGACTAACGGCAGCACTAGCAAAAATTCTGGCGAGGATTCAAATGCGGAGAGCCCAATGGAAGACGGAGGCTCTGACGGGAAGGATAAGTCGGGTAAAAAGAAATGGTTCAATCTTAACCTCAAAGGATCGATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

388

Amino Acids

43.03

Weight (kDa)

5.91

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 18 - 80 2.2e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68370
fragaria_vesca FvH4_4g27000
malus_domestica MD13G1039100.v1.1 MD16G1040000.v1.1
prunus_persica Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1
pyrus_communis pycom13g03360
rosa_chinensis RchiOBHm_Chr4g0434801
rosa_laevigata RLG00000006648
rosa_multiflora Rmu_sc0000179.1_g000002
rosa_roxburghii Rroxscaffold_5G00376010
rosa_rugosa Rorug04G0278500
rosa_samantha Rh4AG335000 Rh4BG343500 Rh4CG357900 Rh4DG337400
rosa_wichuraiana Rw4G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
AciI CCGC 6 cut(s) 35, 38, 49, 108, 372, 1070
AclWI GGATC 2 cut(s) 209, 1159
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 10, 548, 1048
AcuI CTGAAG 4 cut(s) 153, 183, 420, 708
AcyI GRCGYC 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 776
AfaI GTAC 5 cut(s) 236, 381, 403, 872, 1024
AfiI CCNNNNNNNGG 2 cut(s) 48, 61
AgsI TTSAA 8 cut(s) 181, 386, 534, 665, 722, 896, 1065, 1135
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 7 cut(s) 121, 167, 392, 503, 692, 808, 943
AluI AGCT 7 cut(s) 121, 167, 392, 503, 692, 808, 943
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 726, 857, 951
AlwI GGATC 2 cut(s) 209, 1159
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 4 cut(s) 326, 692, 943, 1035
ApoI RAATTY 3 cut(s) 10, 548, 1048
Asp700I GAANNNNTTC 2 cut(s) 717, 1130
AspS9I GGNCC 2 cut(s) 52, 682
AsuHPI GGTGA 2 cut(s) 970, 976
AsuII TTCGAA 1 cut(s) 14
AvaII GGWCC 2 cut(s) 52, 682
BanII GRGCYC 1 cut(s) 1079
BbsI GAAGAC 3 cut(s) 626, 710, 1092
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 4 cut(s) 313, 679, 930, 1047
BccI CCATC 1 cut(s) 989
BceAI ACGGC 2 cut(s) 62, 1048
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 3 cut(s) 726, 857, 951
BfaI CTAG 1 cut(s) 1041
BfmI CTRYAG 2 cut(s) 639, 933
BfuI GTATCC 1 cut(s) 787
BisI GCNGC 6 cut(s) 36, 39, 327, 693, 944, 1036
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 6 cut(s) 37, 40, 328, 694, 945, 1037
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 2 cut(s) 52, 682
BmgT120I GGNCC 2 cut(s) 52, 682
BmiI GGNNCC 3 cut(s) 53, 54, 684
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 4 cut(s) 213, 253, 259, 565
BpiI GAAGAC 3 cut(s) 626, 710, 1092
Bpu1102I GCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 1154
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 273, 301
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 61
BseBI CCWGG 1 cut(s) 302
BseCI ATCGAT 1 cut(s) 1154
BseDI CCNNGG 2 cut(s) 273, 301
BseGI GGATG 2 cut(s) 136, 651
BseLI CCNNNNNNNGG 2 cut(s) 48, 61
BseMII CTCAG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 241
BseXI GCAGC 4 cut(s) 313, 679, 930, 1047
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 1154
BsiHKAI GWGCWC 1 cut(s) 469
BslFI GGGAC 4 cut(s) 19, 40, 65, 319
BslI CCNNNNNNNGG 2 cut(s) 48, 61
BsmAI GTCTC 3 cut(s) 726, 857, 951
BsmFI GGGAC 4 cut(s) 19, 40, 65, 319
BsnI GGCC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 469, 1079
Bsp143I GATC 4 cut(s) 91, 214, 1151, 1155
Bsp1720I GCTNAGC 1 cut(s) 68
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 6 cut(s) 35, 38, 49, 108, 372, 1070
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 1154
BspLI GGNNCC 3 cut(s) 53, 54, 684
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 2 cut(s) 209, 1159
BspT104I TTCGAA 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 273, 301
BssMI GATC 4 cut(s) 91, 214, 1151, 1155
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 4 cut(s) 310, 406, 412, 462
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 136, 651
BstKTI GATC 4 cut(s) 94, 217, 1154, 1158
BstMAI GTCTC 3 cut(s) 726, 857, 951
BstMBI GATC 4 cut(s) 91, 214, 1151, 1155
BstMWI GCNNNNNNNGC 2 cut(s) 263, 1041
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 2 cut(s) 639, 933
BstV1I GCAGC 4 cut(s) 313, 679, 930, 1047
BstV2I GAAGAC 3 cut(s) 626, 710, 1092
BstXI CCANNNNNNTGG 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 1154
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 1154
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 136, 651
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 3 cut(s) 467, 496, 881
Cac8I GCNNGC 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 52, 682
ClaI ATCGAT 1 cut(s) 1154
Csp6I GTAC 5 cut(s) 235, 380, 402, 871, 1023
CviAII CATG 3 cut(s) 274, 280, 1006
CviQI GTAC 5 cut(s) 235, 380, 402, 871, 1023
DdeI CTNAG 1 cut(s) 68
DpnI GATC 4 cut(s) 93, 216, 1153, 1157
DpnII GATC 4 cut(s) 91, 214, 1151, 1155
DraIII CACNNNGTG 1 cut(s) 776
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 1079
Eco47I GGWCC 2 cut(s) 52, 682
Eco57I CTGAAG 4 cut(s) 153, 183, 420, 708
EcoO109I RGGNCCY 2 cut(s) 52, 682
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 1079
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 277, 283, 1009
FaiI YATR 9 cut(s) 44, 60, 201, 275, 281, 591, 674, 759, 1007
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 4 cut(s) 19, 40, 65, 319
FatI CATG 3 cut(s) 273, 279, 1005
FauI CCCGC 1 cut(s) 42
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 6 cut(s) 36, 39, 327, 693, 944, 1036
FokI GGATG 2 cut(s) 123, 658
FriOI GRGCYC 1 cut(s) 1079
Fsp4HI GCNGC 6 cut(s) 36, 39, 327, 693, 944, 1036
FspBI CTAG 1 cut(s) 1041
GluI GCNGC 6 cut(s) 36, 39, 327, 693, 944, 1036
HaeIII GGCC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 3 cut(s) 277, 283, 1009
HindIII AAGCTT 3 cut(s) 119, 165, 806
HinfI GANTC 3 cut(s) 83, 506, 1061
HphI GGTGA 2 cut(s) 970, 976
Hpy188I TCNGA 5 cut(s) 172, 214, 828, 1099, 1160
Hpy188III TCNNGA 8 cut(s) 95, 140, 161, 218, 260, 358, 424, 896
Hpy99I CGWCG 2 cut(s) 34, 802
HpyAV CCTTC 4 cut(s) 17, 707, 871, 1099
HpyCH4III ACNGT 4 cut(s) 310, 406, 412, 462
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 6 cut(s) 191, 245, 539, 641, 658, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 1041
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 3 cut(s) 277, 283, 1009
KflI GGGWCCC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 4 cut(s) 91, 214, 1151, 1155
Lsp1109I GCAGC 4 cut(s) 313, 679, 930, 1047
LweI GCATC 4 cut(s) 213, 253, 259, 565
MaeI CTAG 1 cut(s) 1041
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 5 cut(s) 406, 481, 526, 555, 901
MalI GATC 4 cut(s) 93, 216, 1153, 1157
MboI GATC 4 cut(s) 91, 214, 1151, 1155
MboII GAAGA 7 cut(s) 235, 398, 620, 631, 710, 963, 1097
MfeI CAATTG 1 cut(s) 665
MhlI GDGCHC 2 cut(s) 469, 1079
MluCI AATT 9 cut(s) 10, 17, 285, 366, 548, 665, 736, 857, 1048
MmeI TCCRAC 1 cut(s) 690
MroXI GAANNNNTTC 2 cut(s) 717, 1130
MseI TTAA 7 cut(s) 102, 396, 552, 702, 744, 810, 1140
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 665
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 263, 1041
NcoI CCATGG 1 cut(s) 273
NdeII GATC 4 cut(s) 91, 214, 1151, 1155
NlaIII CATG 3 cut(s) 277, 283, 1009
NlaIV GGNNCC 3 cut(s) 53, 54, 684
NmuCI GTSAC 1 cut(s) 901
NspV TTCGAA 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PdmI GAANNNNTTC 2 cut(s) 717, 1130
PfeI GAWTC 3 cut(s) 83, 506, 1061
PkrI GCNGC 6 cut(s) 37, 40, 328, 694, 945, 1037
PpuMI RGGWCCY 2 cut(s) 52, 682
Psp5II RGGWCCY 2 cut(s) 52, 682
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 53, 54, 684
PspPI GGNCC 2 cut(s) 52, 682
PspPPI RGGWCCY 2 cut(s) 52, 682
PstI CTGCAG 1 cut(s) 643
RsaI GTAC 5 cut(s) 236, 381, 403, 872, 1024
RsaNI GTAC 5 cut(s) 235, 380, 402, 871, 1023
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 7 cut(s) 102, 396, 552, 702, 744, 810, 1140
SatI GCNGC 6 cut(s) 36, 39, 327, 693, 944, 1036
Sau3AI GATC 4 cut(s) 91, 214, 1151, 1155
Sau96I GGNCC 2 cut(s) 52, 682
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 469, 1079
SfaNI GCATC 4 cut(s) 213, 253, 259, 565
SfcI CTRYAG 2 cut(s) 639, 933
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 2 cut(s) 52, 682
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 9 cut(s) 10, 17, 285, 366, 548, 665, 736, 857, 1048
SsiI CCGC 6 cut(s) 35, 38, 49, 108, 372, 1070
SspI AATATT 1 cut(s) 1000
SspMI CTAG 1 cut(s) 1041
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 4 cut(s) 310, 406, 412, 462
TaiI ACGT 1 cut(s) 32
TaqI TCGA 4 cut(s) 14, 77, 86, 1154
TasI AATT 9 cut(s) 10, 17, 285, 366, 548, 665, 736, 857, 1048
TatI WGTACW 2 cut(s) 379, 870
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 3 cut(s) 83, 506, 1061
Tru1I TTAA 7 cut(s) 102, 396, 552, 702, 744, 810, 1140
Tru9I TTAA 7 cut(s) 102, 396, 552, 702, 744, 810, 1140
TscAI CASTG 3 cut(s) 467, 496, 888
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 4 cut(s) 326, 692, 943, 1035
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 1 cut(s) 861
TspGWI ACGGA 2 cut(s) 815, 1104
TspRI CASTG 3 cut(s) 467, 496, 888
VpaK11BI GGWCC 2 cut(s) 52, 682
XapI RAATTY 3 cut(s) 10, 548, 1048
XmnI GAANNNNTTC 2 cut(s) 717, 1130
XspI CTAG 1 cut(s) 1041
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.