pycom13g07180

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
4753873 .. 4759051
5179 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07180.2

Sequence Viewer

Length: 1086 bp
ATGAGTGGATGGAATCGGTCCTCCAGAGGAGCGAGGCTGGGCGGTGGTCGCAATTCGAGTTTGCCGCCCGGGCGCACGTCGACCGTTCGACTCGGAAGAGTCCAGCCACAGGCGCCGGGTCACCGCACGATTTTCTGCAACGATCGCGAGGCTAACATTCCCGTCAGATTCTCGGGGAATTCCATATCGACTACAAAGTACAACTTCATTACATTTTTGCCGAAAGGACTCTTTGAACAGTTCAGGAGGGTAGCTAACCTCTACTTTCTGACGATCTCAATTCTATCAACAACGCCAATCAGTCCTGTGCATCCTGTAACCAATGTGGTCCCTCTGAGTTTGGTGCTTTTTGTTTCTCTTGTTAAGGAAGCATTTGAGGATTGGAAGCGCTTCCAGAATGATATGACCATAAATAATGCTTCTGTCGATGTCTTGCTAGATCAGAAATGGGAAAGTATTCCCTGGAAAAAGTTGCAGGTTGGAGATATTGTCAGGATTAAGCAGAACGGATATTTCCCTGCAGATCTGCTTTTTCTTGCTGGTACAAACCCAGATGGTGTCTGCTACATTGAGACTGCAAATTTGGATGGGGAAACTAATTTGAAGATCAGAAAAGCATTAGAAAAGACTTGGGATTACTCGACTCCTGAGAAAGCATCTGAATTCAAAGGAGAAGTGCAGTGTGAACAACCTAACAATTCTTTGTACACCTACACTGGAAATCTCATTATTGACAAGCAGACATTACCTCTATCTCCAAACCAAATTCTGCTACGAGGTTGCAGTCTCAGGAATACTGAGTACATTTTTGCGACTGTTATATTTACAGGTCATGAAACCAAGGTTATGATGAATGCCATGAATGTTCCTTCGAAAAGAAGTACACTGGAGAGGAAACTTGACAAACTTATACTCGCGCTTTTTGCTTTTCTCTTTACGTTGTGTTTGATTGGAGCTATCGGCAGTGGTGTATTCATCAACCACAAGTACTACTACTTAGGTCTCTGGGGAAAAAAGAGCGGCGACTCGGCAATGGCATACAGCTCGTTTGACCCTAATAACCGTTTTCTGAGGTTATCATTCTGA

Protein Analysis

362

Amino Acids

40.67

Weight (kDa)

9.51

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 1020
AccI GTMKAC 1 cut(s) 80
AccII CGCG 2 cut(s) 147, 917
AciI CCGC 4 cut(s) 42, 65, 124, 1020
AcsI RAATTY 4 cut(s) 178, 580, 662, 765
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 6 cut(s) 200, 544, 707, 803, 883, 989
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 3 cut(s) 236, 604, 667
AjiI CACGTC 1 cut(s) 78
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 3 cut(s) 254, 956, 1044
AluI AGCT 3 cut(s) 254, 956, 1044
Alw26I GTCTC 3 cut(s) 566, 791, 1007
Ama87I CYCGRG 2 cut(s) 68, 172
Aor51HI AGCGCT 1 cut(s) 389
ApoI RAATTY 4 cut(s) 178, 580, 662, 765
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
Asp700I GAANNNNTTC 2 cut(s) 389, 456
AspLEI GCGC 4 cut(s) 75, 115, 390, 919
AspS9I GGNCC 2 cut(s) 18, 328
AsuC2I CCSGG 3 cut(s) 69, 70, 117
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 872
AvaI CYCGRG 2 cut(s) 68, 172
AvaII GGWCC 2 cut(s) 18, 328
BanI GGYRCC 1 cut(s) 112
BccI CCATC 3 cut(s) 3, 548, 581
BcgI CGANNNNNNTGC 2 cut(s) 1026, 1060
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 3 cut(s) 69, 70, 117
BcoDI GTCTC 3 cut(s) 566, 791, 1007
BfaI CTAG 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 2 cut(s) 116, 391
BfuAI ACCTGC 1 cut(s) 466
BglI GCCNNNNNGGC 1 cut(s) 70
BglII AGATCT 1 cut(s) 523
BisI GCNGC 2 cut(s) 65, 1021
BlsI GCNGC 2 cut(s) 66, 1022
BmcAI AGTACT 1 cut(s) 989
Bme1390I CCNGG 4 cut(s) 69, 70, 117, 463
Bme18I GGWCC 2 cut(s) 18, 328
BmeT110I CYCGRG 2 cut(s) 68, 172
BmgBI CACGTC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 18, 328
BmiI GGNNCC 2 cut(s) 114, 330
BmrFI CCNGG 4 cut(s) 69, 70, 117, 463
BmsI GCATC 2 cut(s) 319, 665
BpmI CTGGAG 2 cut(s) 7, 908
Bpu14I TTCGAA 1 cut(s) 872
BpuMI CCSGG 3 cut(s) 69, 70, 117
BsaHI GRCGYC 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 1007
BsaJI CCNNGG 3 cut(s) 68, 461, 840
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 721, 891
Bse3DI GCAATG 1 cut(s) 1038
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 3 cut(s) 68, 461, 840
BseGI GGATG 3 cut(s) 14, 310, 592
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 1038
BseMII CTCAG 5 cut(s) 326, 639, 789, 802, 1061
BseNI ACTGG 2 cut(s) 721, 891
BseRI GAGGAG 1 cut(s) 42
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 698
Bsh1236I CGCG 2 cut(s) 147, 917
Bsh1285I CGRYCG 2 cut(s) 84, 145
BshNI GGYRCC 1 cut(s) 112
BsiEI CGRYCG 2 cut(s) 84, 145
BsiHKCI CYCGRG 2 cut(s) 68, 172
BsiSI CCGG 2 cut(s) 69, 116
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 3 cut(s) 566, 791, 1007
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 859
Bso31I GGTCTC 1 cut(s) 1007
BsoBI CYCGRG 2 cut(s) 68, 172
Bsp119I TTCGAA 1 cut(s) 872
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 5 cut(s) 142, 273, 439, 523, 606
Bsp68I TCGCGA 1 cut(s) 147
BspACI CCGC 4 cut(s) 42, 65, 124, 1020
BspCNI CTCAG 5 cut(s) 327, 640, 790, 801, 1062
BspFNI CGCG 2 cut(s) 147, 917
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 114, 330
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 872
BspT107I GGYRCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 1007
BsrBI CCGCTC 1 cut(s) 1020
BsrDI GCAATG 1 cut(s) 1038
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 2 cut(s) 721, 891
BssECI CCNNGG 3 cut(s) 68, 461, 840
BssMI GATC 5 cut(s) 142, 273, 439, 523, 606
BssNI GRCGYC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 4 cut(s) 85, 240, 817, 1064
Bst6I CTCTTC 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 872
BstDEI CTNAG 6 cut(s) 335, 648, 788, 798, 997, 1070
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 3 cut(s) 14, 310, 592
BstFNI CGCG 2 cut(s) 147, 917
BstH2I RGCGCY 2 cut(s) 116, 391
BstHHI GCGC 4 cut(s) 75, 115, 390, 919
BstKTI GATC 5 cut(s) 145, 276, 442, 526, 609
BstMAI GTCTC 3 cut(s) 566, 791, 1007
BstMBI GATC 5 cut(s) 142, 273, 439, 523, 606
BstMCI CGRYCG 2 cut(s) 84, 145
BstMWI GCNNNNNNNGC 5 cut(s) 48, 70, 112, 144, 923
BstNI CCWGG 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 4 cut(s) 67, 68, 115, 461
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 2 cut(s) 147, 917
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BtrI CACGTC 1 cut(s) 78
BtsCI GGATG 3 cut(s) 14, 310, 592
BtsI GCAGTG 2 cut(s) 686, 970
BtsIMutI CAGTG 4 cut(s) 686, 714, 884, 970
BtuMI TCGCGA 1 cut(s) 147
BveI ACCTGC 1 cut(s) 466
CciI TCATGA 1 cut(s) 832
CfoI GCGC 4 cut(s) 75, 115, 390, 919
Cfr13I GGNCC 2 cut(s) 18, 328
Cfr9I CCCGGG 1 cut(s) 68
Csp6I GTAC 6 cut(s) 199, 543, 706, 802, 882, 988
CviAII CATG 2 cut(s) 833, 859
CviJI RGCY 6 cut(s) 37, 106, 152, 254, 956, 1044
CviKI_1 RGCY 6 cut(s) 37, 106, 152, 254, 956, 1044
CviQI GTAC 6 cut(s) 199, 543, 706, 802, 882, 988
DdeI CTNAG 6 cut(s) 335, 648, 788, 798, 997, 1070
DinI GGCGCC 1 cut(s) 114
DpnI GATC 5 cut(s) 144, 275, 441, 525, 608
DpnII GATC 5 cut(s) 142, 273, 439, 523, 606
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 840
Eco31I GGTCTC 1 cut(s) 1007
Eco47I GGWCC 2 cut(s) 18, 328
Eco47III AGCGCT 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 68, 172
Eco91I GGTNACC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 119
EcoRI GAATTC 2 cut(s) 178, 662
EcoRII CCWGG 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 840
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 2 cut(s) 836, 862
FaiI YATR 9 cut(s) 185, 404, 410, 821, 834, 848, 860, 911, 1039
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 832, 858
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 65, 1021
FokI GGATG 3 cut(s) 21, 297, 599
Fsp4HI GCNGC 2 cut(s) 65, 1021
FspBI CTAG 1 cut(s) 437
GlaI GCGC 4 cut(s) 74, 114, 389, 918
GluI GCNGC 2 cut(s) 65, 1021
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 2 cut(s) 7, 908
HaeII RGCGCY 2 cut(s) 116, 391
HapII CCGG 2 cut(s) 69, 116
HhaI GCGC 4 cut(s) 75, 115, 390, 919
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 2 cut(s) 836, 862
Hin6I GCGC 4 cut(s) 73, 113, 388, 917
HinP1I GCGC 4 cut(s) 73, 113, 388, 917
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 7 cut(s) 13, 90, 99, 168, 228, 643, 1025
HpaII CCGG 2 cut(s) 69, 116
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 4 cut(s) 81, 686, 708, 884
Hpy188I TCNGA 9 cut(s) 95, 167, 270, 336, 444, 611, 661, 1071, 1085
Hpy188III TCNNGA 8 cut(s) 24, 146, 244, 394, 493, 647, 790, 833
Hpy8I GTNNAC 4 cut(s) 81, 686, 708, 884
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 879
HpyCH4III ACNGT 4 cut(s) 85, 240, 817, 1064
HpyCH4IV ACGT 2 cut(s) 77, 938
HpyCH4V TGCA 7 cut(s) 138, 310, 475, 521, 578, 679, 783
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 70, 112, 144, 923
HpyF3I CTNAG 6 cut(s) 335, 648, 788, 798, 997, 1070
HpySE526I ACGT 2 cut(s) 77, 938
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 836, 862
HspAI GCGC 4 cut(s) 73, 113, 388, 917
KasI GGCGCC 1 cut(s) 112
Kzo9I GATC 5 cut(s) 142, 273, 439, 523, 606
LmnI GCTCC 2 cut(s) 29, 953
LweI GCATC 2 cut(s) 319, 665
MaeI CTAG 1 cut(s) 437
MaeII ACGT 2 cut(s) 77, 938
MaeIII GTNAC 2 cut(s) 119, 316
MalI GATC 5 cut(s) 144, 275, 441, 525, 608
MbiI CCGCTC 1 cut(s) 1020
MboI GATC 5 cut(s) 142, 273, 439, 523, 606
MboII GAAGA 2 cut(s) 108, 616
MflI RGATCY 1 cut(s) 523
MluCI AATT 8 cut(s) 52, 178, 279, 580, 598, 662, 697, 765
Mly113I GGCGCC 1 cut(s) 113
MlyI GAGTC 5 cut(s) 84, 108, 222, 637, 1019
MmeI TCCRAC 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 389, 456
MseI TTAA 2 cut(s) 363, 498
MspI CCGG 2 cut(s) 69, 116
MspR9I CCNGG 4 cut(s) 69, 70, 117, 463
Mva1269I GAATGC 1 cut(s) 859
MvaI CCWGG 1 cut(s) 463
MvnI CGCG 2 cut(s) 147, 917
MwoI GCNNNNNNNGC 5 cut(s) 48, 70, 112, 144, 923
NarI GGCGCC 1 cut(s) 113
NciI CCSGG 3 cut(s) 69, 70, 117
NdeII GATC 5 cut(s) 142, 273, 439, 523, 606
NlaIII CATG 2 cut(s) 836, 862
NlaIV GGNNCC 2 cut(s) 114, 330
NmeAIII GCCGAG 1 cut(s) 1007
NmuCI GTSAC 1 cut(s) 119
NruI TCGCGA 1 cut(s) 147
NspV TTCGAA 1 cut(s) 872
PagI TCATGA 1 cut(s) 832
PctI GAATGC 1 cut(s) 859
PdmI GAANNNNTTC 2 cut(s) 389, 456
PfeI GAWTC 2 cut(s) 13, 168
PkrI GCNGC 2 cut(s) 66, 1022
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 5 cut(s) 84, 107, 222, 637, 1019
PluTI GGCGCC 1 cut(s) 116
PpsI GAGTC 5 cut(s) 84, 107, 222, 637, 1019
Psp6I CCWGG 1 cut(s) 461
PspEI GGTNACC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 114, 330
PspPI GGNCC 2 cut(s) 18, 328
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 523
PvuI CGATCG 1 cut(s) 145
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 6 cut(s) 200, 544, 707, 803, 883, 989
RsaNI GTAC 6 cut(s) 199, 543, 706, 802, 882, 988
SalI GTCGAC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 363, 498
SatI GCNGC 2 cut(s) 65, 1021
Sau3AI GATC 5 cut(s) 142, 273, 439, 523, 606
Sau96I GGNCC 2 cut(s) 18, 328
ScaI AGTACT 1 cut(s) 989
SchI GAGTC 5 cut(s) 84, 108, 222, 637, 1019
ScrFI CCNGG 4 cut(s) 69, 70, 117, 463
SfaNI GCATC 2 cut(s) 319, 665
SfcI CTRYAG 1 cut(s) 519
SfoI GGCGCC 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 872
SinI GGWCC 2 cut(s) 18, 328
SmaI CCCGGG 1 cut(s) 70
SrfI GCCCGGGC 1 cut(s) 70
Sse9I AATT 8 cut(s) 52, 178, 279, 580, 598, 662, 697, 765
SsiI CCGC 4 cut(s) 42, 65, 124, 1020
SspDI GGCGCC 1 cut(s) 112
SspMI CTAG 1 cut(s) 437
StyD4I CCNGG 4 cut(s) 67, 68, 115, 461
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 4 cut(s) 85, 240, 817, 1064
TaiI ACGT 2 cut(s) 80, 941
TaqI TCGA 7 cut(s) 56, 80, 88, 188, 426, 641, 872
TaqII GACCGA 1 cut(s) 6
TasI AATT 8 cut(s) 52, 178, 279, 580, 598, 662, 697, 765
TatI WGTACW 5 cut(s) 198, 705, 801, 881, 987
TauI GCSGC 2 cut(s) 67, 1023
TfiI GAWTC 2 cut(s) 13, 168
Tru1I TTAA 2 cut(s) 363, 498
Tru9I TTAA 2 cut(s) 363, 498
TscAI CASTG 4 cut(s) 686, 721, 891, 970
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 5 cut(s) 196, 849, 866, 875, 964
TspGWI ACGGA 1 cut(s) 522
TspMI CCCGGG 1 cut(s) 68
TspRI CASTG 4 cut(s) 686, 721, 891, 970
VpaK11BI GGWCC 2 cut(s) 18, 328
XapI RAATTY 4 cut(s) 178, 580, 662, 765
XmaI CCCGGG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 389, 456
XspI CTAG 1 cut(s) 437
ZrmI AGTACT 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.