Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0010275

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG431300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3666 bp

ATGAGCGGATGGAATCGGTCGTCGAGATCGAGGCTCGGAGGTCGCAGTAACCCGCCGCTCGAGCGAACCTCGACGACGACGACGGTGCGGCTCGGACGCGTCCAGCCCCAAGCGCCGAGTAACCGCACCATTTACTGCAATGATCGCGAGGCTAATCTTCCCGTCAAATTTGTGGGGAATTCTATAGCTACTACAAAGTACAACTTCTTAACTTTTTTGCCGAAAGGACTCTTTGAACAGTTCAGACGGGTAGCTAATCTGTACTTCCTTGGAATCTCAATTTTATCAACAACACCAATCAGTCCCGTGAATCCAGTAACCAACGTGGTACCGCTGAGTTTTGTGCTTTTTCTTTCTCTTGTAAAGGAAGCATGGGAGGATTGGAAGCGTTTCCAGAATGATATGACAATAAATAATAATTCAGTGGATGTCTTGCAAGATCAGAGGTGGGAAACTATTCCTTGGAAAAGGTTACAAGTTGGAGATATCGTCAGGATTAAGCAAAACGCATTCTTCCCTGCGGATCTTCTTTTTCTTGCAACTACAAACGCAGATGGTGTCTGCTACATTGAGACTGCAAATTTGGATGGGGAAACTAATCTCAAAATCAGAAAAGCACTGGAAAAGACATGGGATTACTTGACTCCTGAGAAAGCATCTGAATTTAAAGGAGAACTGCAGTGTGAACAACCAAACAATTCACTGTACACTTTCACCGGCAATCTCATTATTGACAAGCAGACACTACCTCTCTCTCCTAACCATCTTCTTCTTCGTGGATGCAGCCTAAGGAACACGGAATACATAGTTGGGGCTGTTGTATTTACAGGTCATGAAACCAAGGTTATGATGAATAGCATGAATGTTCCTTCTAAAAGAAGTACATTAGAGAGGAAACTTGACAAACTTATCATTGGGCTTTTTATTACTCTCTTTTGTATGTGTCTGATTGGAGCCATATGCAGTGGTGTATTTATCAACTACAAGTACTACTACTTAGGTCTGCGGGGATCAAAGGGAGAGAACATATCGTACAGCTCATTTAACCCTGATAATCGTTTTCTGGTCATCATTCTGAATATGTTTACCTTGATTACTCTGTACTCGACAATCATCCCCATTTCTCTTTACATTTCCATTGAGATGATCAAATTTATTCAGTCCACCCAATATATCAACAATGACTTGCGTATGTACCACATGGAAAGCAATACCCCTGCATTGGCTAGGACTTCGAATTTGAATGAGGAACTTGGACAGGTGGAATACATCTTTTCTGATAAAACTGGAACTTTAACAAGAAACTTGATGGAGTTCTTCAAGTGTTCAATTGGAGGAGAGGTCTATGGAACTGGTGTCACTGAAATAGAAAGGGGCATAGCACAAAGAAGTGGTATAAAGCTTAATGAGGAGTACACGTCCGACACAGTGCATGACAAGGGATTTAACTTCGATGATGCCAAGCTCATGCGGGGAGCTTGGAGGAATGAACCTAATCCAGATATCTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCATACTGTACTTCCAGAGGGTGATGAGTCCCCTGAGAAGATCACATATCAAGCTGCATCCCCTGATGAGTCTGCTTTGGTCATTGCTGCGAAGAATTTTGGTTTCTTCTTTTACAGGCGTTCACCGACTACTATATGTGTTAGAGAGTCTCATGTTGAGAAAGTTGGTGATGTCCAAGATGTGTCTTACGAGATTCTAAATGTCCTCGAGTTTAACAGTACAAGGAAGCGTCAGTCTGTTGTATGCCGTTATCCAGATGGCAGACTTGTCTTGTACTGCAAGGGTGCTGATAATGTAATCTATGAGAGATTGGCTGATGGCCAAGATGATCTGAAGAAAGTATCAAGGGAACACTTGGAACTATTTGGGTCTTCTGGATTACGTACTCTTTGCCTGGCCTATAGAGATTTAAGTCCTGATGTATATGAAAGCTGGAATGAGAAATTTATTCAGGCTAAATCCTCTCTACGGGATCGTGAAAAGAAGCTGGATGAGGTGGCAGAACTCATAGAGATTGATCTCATATTGATTGGATGCACTGCTATTGAAGACAAGCTTCAGGAAGGAGTTCCAGCTTGTATAGAGACTCTTGCTAGAGCTGGTATCAAGATTTGGATGCTAACAGGAGACAAGATGGAAACAGCTATAAATATAGGTTATGCATGCAATTTGATCAATAACGCAATGAAACAGTTCATTATCAGCTCAGAAACTGATGTTATTAGGGAAGCTGAGAACAGGGGTGACCAAGTGGAAATTGCACGTGTCATTAAAGATGAAGTGAAGAAAGATCTGAAGAGGTGCCTTGAGGAAGCACAGCACTGTCTTCGCACCGTGTCTGGGCCAAAATTAGCACTTGTAATAGATGGCAAGTGTTTGATGTATGCCTTGGAACCAACTTTACGAGTGATGCTACTGAACTTGAGCTTGAACTGTCATTCAGTTGTGTGCTGTCGAGTTTCTCCTTTACAGAAAGCACAGGTGACAAGTATGGTAAGAAAAGGTGCCCGGAGAATAACACTTAGCATTGGTGATGGTGCCAATGATGTGAGCATGATCCAAGCTGCTCATGTTGGCGTTGGAATAAGTGGACAAGAGGGAATGCAGGCAGTGATGGCTAGTGATTTCGCTATTGCCCAGTTCCGCTTTCTTACTGATTTACTTCTTGTCCATGGACGATGGTCGTATATCAGATTATGCAAGGTCATCACATACTTCTTTTACAAGAATCTTACGTTCACTTTGACACAATTTTGGTTCACCTTTTATACTGGATATTCTGGTCAAAGGTTCTATGATGATTGGTATCAATCACTATATAATGTCATATTCACAGCCTTGCCTGTAGTCATTGTCGGGCTTTTTGACAAGGATGTCAGTGCAGCCCTTTCCAAAAAGTACCCTGAACTATACAGGGAGGGAATAAGAAATGTGTTCTTCAGATGGAGAGTTGTGGCAACGTGGGCCTTCTTTTCTGTTTACCAATCTTTAATCTTCTTCTATGTTGTGACTAGCTCTGCTGTTAGAAGTGTGGATTCATCTGGCAAGATGTTTGGACATATGGATGTCAGCACAATGGCTTTCACTTGTGTTGTAGTAACTGTCAACTTGCGTCTGCTTATGACCTGTAATTCAATCACAAGGTGGCATTATATTAGTGTTGGAGGAAGCATTTTAGCGTGGTTTATATTCATTTTCATATACTGTTTTGCAGACCATAGGAAAAGTGTTTATTATGTCATATTTGTCTTGATGAGTACATTTTACTTCTACATGACACTTCTTCTTGTGCCCATTCTTGCACTCTTTGGCGACTTTGTTTACCAAGTGTTGCAAAGATGGTTCTTCCCATACGATTATCAGATAATTCAGGAACTTCACAGGGATGAGCCAGAAGGTAGGCGCAGGGAAGATTTGCTGGAAATTGGAAACAACCTCACCCCTGCCGAGGCGAGGAGCTATGCTGTAGCTCAACTCCCACGGGAGATTTCAAAACACACTGGCTTTGCTTTTGACTCACCTGGATATGAATCATTCTTTGCTAAACAGGCAGGTGTATATGCCCCTCAAAAAGCATGGGATGTTGCTCGGAGAGCCAGCATGAGAAGGACAGCGAAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1221

Amino Acids

139.37

Weight (kDa)

8.49

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	44 - 108	7.2e-25	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	503 - 701	3.5e-20	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	884 - 1130	1.8e-82	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59820
fragaria_vesca	FvH4_4g35440 FvH4_4g35440 FvH4_4g35440 FvH4_4g35440
malus_domestica	MD13G1083400.v1.1 MD16G1082100.v1.1
prunus_persica	Prupe.1G263700_v2.0.a1 Prupe.1G263700_v2.0.a1 Prupe.1G263700_v2.0.a1
pyrus_communis	pycom13g07180 pycom16g07110
rosa_chinensis	RchiOBHm_Chr4g0445071
rosa_laevigata	RLG00000005770
rosa_multiflora	Rmu_sc0003784.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385610
rosa_rugosa	Rorug04G0358500
rosa_samantha	Rh4AG419600 Rh4BG431300 Rh4CG445800
rosa_wichuraiana	Rw4G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3581
AasI	GACNNNNNNGTC	1 cut(s)	2912
Acc36I	ACCTGC	1 cut(s)	3581
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	4 cut(s)	328, 2340, 2543, 2576
AccBSI	CCGCTC	2 cut(s)	6, 58
AccII	CGCG	2 cut(s)	99, 147
AclWI	GGATC	4 cut(s)	531, 1018, 2019, 2590
AcoI	YGGCCR	1 cut(s)	1858
AcsI	RAATTY	9 cut(s)	167, 178, 580, 662, 1151, 1237, 1514, 1633, 1982
AcuI	CTGAAG	4 cut(s)	1892, 2081, 2354, 2962
AcvI	CACGTG	1 cut(s)	2303
AdeI	CACNNNGTG	1 cut(s)	3183
AfiI	CCNNNNNNNGG	5 cut(s)	1222, 2007, 2379, 3487, 3492
AflIII	ACRYGT	3 cut(s)	97, 1416, 2302
AgsI	TTSAA	8 cut(s)	236, 1243, 1321, 1329, 2087, 2470, 3174, 3531
AjiI	CACGTC	1 cut(s)	1419
AjnI	CCWGG	2 cut(s)	1932, 3559
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
Alw26I	GTCTC	4 cut(s)	566, 1692, 2117, 2160
AlwI	GGATC	4 cut(s)	531, 1018, 2019, 2590
AlwNI	CAGNNNCTG	1 cut(s)	2252
Ama87I	CYCGRG	2 cut(s)	59, 1745
AoxI	GGCC	4 cut(s)	1858, 1935, 2381, 3003
ApeKI	GCWGC	5 cut(s)	783, 1592, 1625, 2603, 2921
ApoI	RAATTY	9 cut(s)	167, 178, 580, 662, 1151, 1237, 1514, 1633, 1982
ArsI	GACNNNNNNTTYG	4 cut(s)	565, 597, 1222, 1254
Asp700I	GAANNNNTTC	4 cut(s)	389, 456, 2106, 2231
Asp718I	GGTACC	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	115, 3444
AspS9I	GGNCC	2 cut(s)	2381, 3003
AsuC2I	CCSGG	1 cut(s)	2548
AsuII	TTCGAA	1 cut(s)	1235
AvaI	CYCGRG	2 cut(s)	59, 1745
AxyI	CCTNAGG	1 cut(s)	788
BaeGI	GKGCMC	2 cut(s)	2548, 3333
BalI	TGGCCA	1 cut(s)	1860
BanI	GGYRCC	4 cut(s)	328, 2340, 2543, 2576
BbrPI	CACGTG	1 cut(s)	2303
BbsI	GAAGAC	3 cut(s)	1902, 2094, 2357
BbvI	GCAGC	5 cut(s)	795, 1579, 1612, 2590, 2933
BceAI	ACGGC	1 cut(s)	1770
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 2348, 2382
BciT130I	CCWGG	2 cut(s)	1934, 3561
BclI	TGATCA	2 cut(s)	1146, 2211
BcnI	CCSGG	1 cut(s)	2548
BcoDI	GTCTC	4 cut(s)	566, 1692, 2117, 2160
BfaI	CTAG	4 cut(s)	1227, 2133, 2658, 3051
BfmI	CTRYAG	5 cut(s)	183, 677, 1939, 2883, 3504
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	3581
BglII	AGATCT	1 cut(s)	2329
BisI	GCNGC	7 cut(s)	56, 89, 784, 1593, 1626, 2604, 2922
BlsI	GCNGC	7 cut(s)	57, 90, 785, 1594, 1627, 2605, 2923
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	3 cut(s)	1934, 2548, 3561
BmeT110I	CYCGRG	2 cut(s)	59, 1745
BmgBI	CACGTC	1 cut(s)	1419
BmgT120I	GGNCC	2 cut(s)	2381, 3003
BmiI	GGNNCC	6 cut(s)	330, 955, 2342, 2433, 2545, 2578
BmrFI	CCNGG	3 cut(s)	1934, 2548, 3561
BmrI	ACTGGG	1 cut(s)	2671
BmsI	GCATC	8 cut(s)	665, 770, 1447, 1514, 1604, 2063, 2145, 2439
BmuI	ACTGGG	1 cut(s)	2671
BoxI	GACNNNNGTC	1 cut(s)	2719
BpiI	GAAGAC	3 cut(s)	1902, 2094, 2357
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu14I	TTCGAA	1 cut(s)	1235
BpuEI	CTTGAG	2 cut(s)	2366, 2482
BpuMI	CCSGG	1 cut(s)	2548
BsaAI	YACGTR	2 cut(s)	1922, 2303
BsaBI	GATNNNNATC	2 cut(s)	2844, 3568
BsaJI	CCNNGG	7 cut(s)	268, 461, 840, 2427, 2710, 3486, 3518
BsaXI	ACNNNNNCTCC	6 cut(s)	474, 504, 1326, 1356, 1403, 1433
Bsc4I	CCNNNNNNNGG	5 cut(s)	1222, 2007, 2379, 3487, 3492
Bse118I	RCCGGY	1 cut(s)	716
Bse1I	ACTGG	7 cut(s)	314, 624, 1291, 1357, 2677, 2815, 3544
Bse21I	CCTNAGG	1 cut(s)	788
Bse3DI	GCAATG	3 cut(s)	145, 1620, 2229
Bse8I	GATNNNNATC	2 cut(s)	2844, 3568
BseBI	CCWGG	2 cut(s)	1934, 3561
BseDI	CCNNGG	7 cut(s)	268, 461, 840, 2427, 2710, 3486, 3518
BseJI	GATNNNNATC	2 cut(s)	2844, 3568
BseLI	CCNNNNNNNGG	5 cut(s)	1222, 2007, 2379, 3487, 3492
BseMI	GCAATG	3 cut(s)	145, 1620, 2229
BseMII	CTCAG	5 cut(s)	326, 639, 1563, 2259, 2262
BseNI	ACTGG	7 cut(s)	314, 624, 1291, 1357, 2677, 2815, 3544
BseRI	GAGGAG	3 cut(s)	1350, 1424, 3508
BseSI	GKGCMC	2 cut(s)	2548, 3333
BseXI	GCAGC	5 cut(s)	795, 1579, 1612, 2590, 2933
BsgI	GTGCAG	1 cut(s)	2940
Bsh1236I	CGCG	2 cut(s)	99, 147
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	4 cut(s)	1860, 1937, 2383, 3005
BshNI	GGYRCC	4 cut(s)	328, 2340, 2543, 2576
BsiEI	CGRYCG	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	59, 1745
BsiSI	CCGG	2 cut(s)	717, 2548
BslFI	GGGAC	2 cut(s)	288, 1552
BslI	CCNNNNNNNGG	5 cut(s)	1222, 2007, 2379, 3487, 3492
BsmAI	GTCTC	4 cut(s)	566, 1692, 2117, 2160
BsmFI	GGGAC	2 cut(s)	288, 1552
BsmI	GAATGC	2 cut(s)	509, 2646
BsnI	GGCC	4 cut(s)	1860, 1937, 2383, 3005
BsoBI	CYCGRG	2 cut(s)	59, 1745
Bsp119I	TTCGAA	1 cut(s)	1235
Bsp1286I	GDGCHC	2 cut(s)	2548, 3333
Bsp1407I	TGTACA	1 cut(s)	705
Bsp19I	CCATGG	1 cut(s)	2710
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	1860, 1937, 2383, 3005
BspCNI	CTCAG	5 cut(s)	327, 640, 1564, 2258, 2263
BspFNI	CGCG	2 cut(s)	99, 147
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	6 cut(s)	330, 955, 2342, 2433, 2545, 2578
BspMAI	CTGCAG	1 cut(s)	681
BspMI	ACCTGC	1 cut(s)	3581
BspPI	GGATC	4 cut(s)	531, 1018, 2019, 2590
BspT104I	TTCGAA	1 cut(s)	1235
BspT107I	GGYRCC	4 cut(s)	328, 2340, 2543, 2576
BsrBI	CCGCTC	2 cut(s)	6, 58
BsrDI	GCAATG	3 cut(s)	145, 1620, 2229
BsrFI	RCCGGY	1 cut(s)	716
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	7 cut(s)	314, 624, 1291, 1357, 2677, 2815, 3544
BssAI	RCCGGY	1 cut(s)	716
BssECI	CCNNGG	7 cut(s)	268, 461, 840, 2427, 2710, 3486, 3518
BssT1I	CCWWGG	5 cut(s)	268, 461, 840, 2427, 2710
Bst2UI	CCWGG	2 cut(s)	1934, 3561
Bst6I	CTCTTC	1 cut(s)	2330
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	2 cut(s)	1922, 2303
BstBI	TTCGAA	1 cut(s)	1235
BstC8I	GCNNGC	3 cut(s)	2203, 2646, 3637
BstDEI	CTNAG	8 cut(s)	335, 648, 788, 997, 1572, 2245, 2271, 2561
BstDSI	CCRYGG	2 cut(s)	2710, 3518
BstEII	GGTNACC	1 cut(s)	2282
BstFNI	CGCG	2 cut(s)	99, 147
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 3444
BstMAI	GTCTC	4 cut(s)	566, 1692, 2117, 2160
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 112, 144, 2654, 3002, 3587, 3632
BstNI	CCWGG	2 cut(s)	1934, 3561
BstNSI	RCATGY	1 cut(s)	2205
BstPAI	GACNNNNGTC	1 cut(s)	2719
BstPI	GGTNACC	1 cut(s)	2282
BstSCI	CCNGG	3 cut(s)	1932, 2546, 3559
BstSFI	CTRYAG	5 cut(s)	183, 677, 1939, 2883, 3504
BstSLI	GKGCMC	2 cut(s)	2548, 3333
BstSNI	TACGTA	1 cut(s)	1922
BstUI	CGCG	2 cut(s)	99, 147
BstV1I	GCAGC	5 cut(s)	795, 1579, 1612, 2590, 2933
BstV2I	GAAGAC	3 cut(s)	1902, 2094, 2357
BstX2I	RGATCY	2 cut(s)	523, 2329
BstYI	RGATCY	2 cut(s)	523, 2329
Bsu36I	CCTNAGG	1 cut(s)	788
BsuRI	GGCC	4 cut(s)	1860, 1937, 2383, 3005
BtgI	CCRYGG	2 cut(s)	2710, 3518
BtrI	CACGTC	1 cut(s)	1419
BtsI	GCAGTG	4 cut(s)	686, 970, 2076, 2655
BtuMI	TCGCGA	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	3581
Cac8I	GCNNGC	3 cut(s)	2203, 2646, 3637
CaiI	CAGNNNCTG	1 cut(s)	2252
CciI	TCATGA	1 cut(s)	832
CfoI	GCGC	2 cut(s)	115, 3444
Cfr10I	RCCGGY	1 cut(s)	716
Cfr13I	GGNCC	2 cut(s)	2381, 3003
CseI	GACGC	4 cut(s)	88, 105, 1757, 3140
DdeI	CTNAG	8 cut(s)	335, 648, 788, 997, 1572, 2245, 2271, 2561
DraI	TTTAAA	1 cut(s)	667
DraIII	CACNNNGTG	1 cut(s)	3183
DrdI	GACNNNNNNGTC	1 cut(s)	2912
DseDI	GACNNNNNNGTC	1 cut(s)	2912
EaeI	YGGCCR	1 cut(s)	1858
Eam1104I	CTCTTC	1 cut(s)	2330
EarI	CTCTTC	1 cut(s)	2330
Eco105I	TACGTA	1 cut(s)	1922
Eco130I	CCWWGG	5 cut(s)	268, 461, 840, 2427, 2710
Eco32I	GATATC	2 cut(s)	487, 1504
Eco57I	CTGAAG	4 cut(s)	1892, 2081, 2354, 2962
Eco72I	CACGTG	1 cut(s)	2303
Eco81I	CCTNAGG	1 cut(s)	788
Eco88I	CYCGRG	2 cut(s)	59, 1745
Eco91I	GGTNACC	1 cut(s)	2282
EcoO65I	GGTNACC	1 cut(s)	2282
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	1932, 3559
EcoRV	GATATC	2 cut(s)	487, 1504
EcoT14I	CCWWGG	5 cut(s)	268, 461, 840, 2427, 2710
EcoT22I	ATGCAT	1 cut(s)	2203
ErhI	CCWWGG	5 cut(s)	268, 461, 840, 2427, 2710
FalI	AAGNNNNNCTT	4 cut(s)	188, 220, 2079, 2111
FaqI	GGGAC	2 cut(s)	288, 1552
FauI	CCCGC	3 cut(s)	60, 999, 1464
FauNDI	CATATG	2 cut(s)	959, 3099
FbaI	TGATCA	2 cut(s)	1146, 2211
Fnu4HI	GCNGC	7 cut(s)	56, 89, 784, 1593, 1626, 2604, 2922
Fsp4HI	GCNGC	7 cut(s)	56, 89, 784, 1593, 1626, 2604, 2922
FspBI	CTAG	4 cut(s)	1227, 2133, 2658, 3051
GlaI	GCGC	2 cut(s)	114, 3443
GluI	GCNGC	7 cut(s)	56, 89, 784, 1593, 1626, 2604, 2922
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	1860, 1937, 2383, 3005
HapII	CCGG	2 cut(s)	717, 2548
HgaI	GACGC	4 cut(s)	88, 105, 1757, 3140
HhaI	GCGC	2 cut(s)	115, 3444
Hin6I	GCGC	2 cut(s)	113, 3442
HinP1I	GCGC	2 cut(s)	113, 3442
HincII	GTYRAC	1 cut(s)	3145
HindII	GTYRAC	1 cut(s)	3145
HindIII	AAGCTT	2 cut(s)	1400, 2093
HpaII	CCGG	2 cut(s)	717, 2548
Hpy99I	CGWCG	5 cut(s)	25, 76, 79, 82, 85
HpyAV	CCTTC	5 cut(s)	879, 2096, 3016, 3428, 3639
HpyCH4IV	ACGT	6 cut(s)	324, 1418, 1921, 2302, 2774, 2999
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 112, 144, 2654, 3002, 3587, 3632
HpyF3I	CTNAG	8 cut(s)	335, 648, 788, 997, 1572, 2245, 2271, 2561
HpySE526I	ACGT	6 cut(s)	324, 1418, 1921, 2302, 2774, 2999
HspAI	GCGC	2 cut(s)	113, 3442
KpnI	GGTACC	1 cut(s)	332
Ksp22I	TGATCA	2 cut(s)	1146, 2211
LmnI	GCTCC	3 cut(s)	953, 1475, 3495
Lsp1109I	GCAGC	5 cut(s)	795, 1579, 1612, 2590, 2933
LweI	GCATC	8 cut(s)	665, 770, 1447, 1514, 1604, 2063, 2145, 2439
MaeI	CTAG	4 cut(s)	1227, 2133, 2658, 3051
MaeII	ACGT	6 cut(s)	324, 1418, 1921, 2302, 2774, 2999
MaeIII	GTNAC	9 cut(s)	47, 119, 316, 471, 1357, 2282, 2521, 3046, 3136
MbiI	CCGCTC	2 cut(s)	6, 58
MfeI	CAATTG	1 cut(s)	1329
MflI	RGATCY	2 cut(s)	523, 2329
MhlI	GDGCHC	2 cut(s)	2548, 3333
MlsI	TGGCCA	1 cut(s)	1860
MluI	ACGCGT	1 cut(s)	97
MluNI	TGGCCA	1 cut(s)	1860
MlyI	GAGTC	7 cut(s)	222, 637, 1574, 1616, 1694, 2119, 3548
MmeI	TCCRAC	4 cut(s)	460, 1446, 2599, 3181
Mox20I	TGGCCA	1 cut(s)	1860
Mph1103I	ATGCAT	1 cut(s)	2203
MroXI	GAANNNNTTC	4 cut(s)	389, 456, 2106, 2231
MscI	TGGCCA	1 cut(s)	1860
MslI	CAYNNNNRTG	3 cut(s)	1142, 3102, 3423
Msp20I	TGGCCA	1 cut(s)	1860
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	2 cut(s)	717, 2548
MspR9I	CCNGG	3 cut(s)	1934, 2548, 3561
MunI	CAATTG	1 cut(s)	1329
Mva1269I	GAATGC	2 cut(s)	509, 2646
MvaI	CCWGG	2 cut(s)	1934, 3561
MvnI	CGCG	2 cut(s)	99, 147
MwoI	GCNNNNNNNGC	7 cut(s)	61, 112, 144, 2654, 3002, 3587, 3632
NciI	CCSGG	1 cut(s)	2548
NcoI	CCATGG	1 cut(s)	2710
NdeI	CATATG	2 cut(s)	959, 3099
NlaIV	GGNNCC	6 cut(s)	330, 955, 2342, 2433, 2545, 2578
NmeAIII	GCCGAG	2 cut(s)	141, 3511
NmuCI	GTSAC	4 cut(s)	1357, 2282, 2521, 3046
NruI	TCGCGA	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	2203
NspI	RCATGY	1 cut(s)	2205
NspV	TTCGAA	1 cut(s)	1235
PaeI	GCATGC	1 cut(s)	2205
PaeR7I	CTCGAG	2 cut(s)	59, 1745
PagI	TCATGA	1 cut(s)	832
PaqCI	CACCTGC	1 cut(s)	3581
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 77
PctI	GAATGC	2 cut(s)	509, 2646
PdmI	GAANNNNTTC	4 cut(s)	389, 456, 2106, 2231
PfeI	GAWTC	7 cut(s)	13, 273, 310, 1732, 2767, 3074, 3569
PkrI	GCNGC	7 cut(s)	57, 90, 785, 1594, 1627, 2605, 2923
PleI	GAGTC	7 cut(s)	222, 637, 1573, 1615, 1693, 2119, 3548
PmaCI	CACGTG	1 cut(s)	2303
PmlI	CACGTG	1 cut(s)	2303
PpsI	GAGTC	7 cut(s)	222, 637, 1573, 1615, 1693, 2119, 3548
Ppu21I	YACGTR	2 cut(s)	1922, 2303
PshAI	GACNNNNGTC	1 cut(s)	2719
Psp6I	CCWGG	2 cut(s)	1932, 3559
PspCI	CACGTG	1 cut(s)	2303
PspEI	GGTNACC	1 cut(s)	2282
PspGI	CCWGG	2 cut(s)	1932, 3559
PspN4I	GGNNCC	6 cut(s)	330, 955, 2342, 2433, 2545, 2578
PspPI	GGNCC	2 cut(s)	2381, 3003
PspXI	VCTCGAGB	2 cut(s)	59, 1745
PsrI	GAACNNNNNNTAC	6 cut(s)	785, 817, 1016, 1048, 2424, 2456
PstI	CTGCAG	1 cut(s)	681
PstNI	CAGNNNCTG	1 cut(s)	2252
PsuI	RGATCY	2 cut(s)	523, 2329
RruI	TCGCGA	1 cut(s)	147
RseI	CAYNNNNRTG	3 cut(s)	1142, 3102, 3423
SatI	GCNGC	7 cut(s)	56, 89, 784, 1593, 1626, 2604, 2922
Sau96I	GGNCC	2 cut(s)	2381, 3003
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	7 cut(s)	222, 637, 1574, 1616, 1694, 2119, 3548
ScrFI	CCNGG	3 cut(s)	1934, 2548, 3561
SduI	GDGCHC	2 cut(s)	2548, 3333
SfaNI	GCATC	8 cut(s)	665, 770, 1447, 1514, 1604, 2063, 2145, 2439
SfcI	CTRYAG	5 cut(s)	183, 677, 1939, 2883, 3504
Sfr274I	CTCGAG	2 cut(s)	59, 1745
SfuI	TTCGAA	1 cut(s)	1235
SlaI	CTCGAG	2 cut(s)	59, 1745
SmiMI	CAYNNNNRTG	3 cut(s)	1142, 3102, 3423
SmlI	CTYRAG	4 cut(s)	59, 1745, 2345, 2461
SmoI	CTYRAG	4 cut(s)	59, 1745, 2345, 2461
SnaBI	TACGTA	1 cut(s)	1922
SphI	GCATGC	1 cut(s)	2205
SspMI	CTAG	4 cut(s)	1227, 2133, 2658, 3051
StyD4I	CCNGG	3 cut(s)	1932, 2546, 3559
StyI	CCWWGG	5 cut(s)	268, 461, 840, 2427, 2710
TaiI	ACGT	6 cut(s)	327, 1421, 1924, 2305, 2777, 3002
TaqI	TCGA	9 cut(s)	23, 29, 60, 71, 1106, 1235, 1452, 1746, 2494
TaqII	GACCGA	1 cut(s)	6
TauI	GCSGC	2 cut(s)	58, 91
TfiI	GAWTC	7 cut(s)	13, 273, 310, 1732, 2767, 3074, 3569
TseFI	GTSAC	4 cut(s)	1357, 2282, 2521, 3046
TseI	GCWGC	5 cut(s)	783, 1592, 1625, 2603, 2921
Tsp45I	GTSAC	4 cut(s)	1357, 2282, 2521, 3046
TspGWI	ACGGA	1 cut(s)	812
XapI	RAATTY	9 cut(s)	167, 178, 580, 662, 1151, 1237, 1514, 1633, 1982
XceI	RCATGY	1 cut(s)	2205
XhoI	CTCGAG	2 cut(s)	59, 1745
XmnI	GAANNNNTTC	4 cut(s)	389, 456, 2106, 2231
XspI	CTAG	4 cut(s)	1227, 2133, 2658, 3051
ZrmI	AGTACT	1 cut(s)	989
Zsp2I	ATGCAT	1 cut(s)	2203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.