Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006595

Physical Location & Seq

Genomic Coordinates Reverse (-)

5575591 .. 5576685

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAACGTTTCAGTTCTTTCCCAACATTTGCTTCTCCTGAAGATCCTGCTGTTACTAGGAATGACTGTCGGATCGATCCAAGAACGAAGACGGTCCAAGTAATGTGCGGCAACCAACTTGAGCACAACACAACCGTGTTTGTTCCGAATGTTGCCAGCACGATGCAAAACATCAGTGAACAAATGCGAACTTCCGGCTTCGGAGTGGCAGTCACCGGTTCAGGCCCCAACACCGACTACGGGCTAGCTCAATGCTACGGAGACCTTTCTCTTCCAGACTGTGTGCTATGCTACGACAAGGCGCGTACAGTGCTTCCCCAATGTTTTCCTTACACTGCGGGTCGGATTTTTCTCGACGGTTGCTTCATGAGGTCCGAAAACTATAGCTTTTACGAGGAGTTTAGAGGATCGGAAGACAGGGTTGAGTGTGGGAACACGAGGAGGAAGAGTTCGGCGTTCGGAGACTCGGCAAGGCAGGTTGTGAAGCGTGCGGTTGAGTCTGCGCCAAGCAACCGAGGATATGCAAGGGGTGAGGTGAGCGTGAGTGGGACGGAAAACGAGTCAGCTTATGTGTTGGCTGATTGCTGGAGAACTTTGGATAAGAGCTCTTGCAGACAGTGTTTGGAAAATGCATCTGCATCAATGTTGGGATGCTTGCCTTGGTCCGAGGGGCGAGCGTTGTACACCGGGTGCTTCATGAGGTATTCAGACACAGATTTTCTCAACAAGGAAATGGGAAATGGAAGCTCCAGAGGTACCACAATTGTCATAGTTGTTTCAGTTGTCAGCTCCTTGGTAGTTTTGGTAGTTGGAGTAGCCATTGGATTTTATATCTGGAAGCACAGATATATGCAAAAGAAAAGAAGAGGTAAAAGAAGAAAGAATGCTTTCCAATGTGCTTTCTGTTCTTCTCATTCAGAGGTATATATACAATCATATACAATCCTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010035 GO:0010193 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046677 GO:0046777 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

318

Amino Acids

35.3

Weight (kDa)

8.68

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	36 - 128	6e-13	Salt stress response/antifungal
Stress-antifung	PF01657	143 - 237	6.4e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70520 AT4G28670
fragaria_vesca	FvH4_4g26071 FvH4_4g26071 FvH4_4g26071
malus_domestica	MD13G1096000.v1.1 MD16G1097400.v1.1
prunus_persica	Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1
pyrus_communis	pycom13g08370 pycom13g08380 pycom13g08410
rosa_chinensis	RchiOBHm_Chr4g0433531
rosa_laevigata	RLG00000006745
rosa_multiflora	Rmu_sc0000312.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375050
rosa_rugosa	Rorug04G0269400 Rorug04G0269500 Rorug04G0269600
rosa_samantha	Rh4AG324200 Rh4BG332200 Rh4CG347500 Rh4DG328500
rosa_wichuraiana	Rw0G020170 Rw4G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
Acc65I	GGTACC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	755
AccII	CGCG	1 cut(s)	304
AciI	CCGC	3 cut(s)	108, 338, 491
AclI	AACGTT	1 cut(s)	7
AclWI	GGATC	4 cut(s)	38, 71, 80, 415
AcuI	CTGAAG	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	690
AfaI	GTAC	3 cut(s)	307, 683, 757
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgeI	ACCGGT	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AleI	CACNNNNGTG	1 cut(s)	134
AloI	GAACNNNNNNTCC	2 cut(s)	433, 465
AluBI	AGCT	6 cut(s)	248, 387, 566, 606, 747, 789
AluI	AGCT	6 cut(s)	248, 387, 566, 606, 747, 789
Alw21I	GWGCWC	2 cut(s)	126, 608
Alw26I	GTCTC	2 cut(s)	255, 456
AlwI	GGATC	4 cut(s)	38, 71, 80, 415
AoxI	GGCC	1 cut(s)	223
AsiGI	ACCGGT	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	887
Asp718I	GGTACC	1 cut(s)	755
AspLEI	GCGC	2 cut(s)	304, 505
AspS9I	GGNCC	4 cut(s)	94, 224, 372, 663
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	3 cut(s)	205, 542, 547
AsuNHI	GCTAGC	1 cut(s)	244
AvaII	GGWCC	3 cut(s)	94, 372, 663
BanI	GGYRCC	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	608
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	95, 420
Bbv12I	GWGCWC	2 cut(s)	126, 608
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	255, 456
BfaI	CTAG	2 cut(s)	57, 245
BfmI	CTRYAG	1 cut(s)	382
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	688
Bme18I	GGWCC	3 cut(s)	94, 372, 663
BmgT120I	GGNCC	4 cut(s)	94, 224, 372, 663
BmiI	GGNNCC	2 cut(s)	226, 757
BmrFI	CCNGG	1 cut(s)	688
BmsI	GCATC	4 cut(s)	153, 641, 641, 647
BmtI	GCTAGC	1 cut(s)	248
BpiI	GAAGAC	2 cut(s)	95, 420
BpmI	CTGGAG	2 cut(s)	607, 733
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	688
Bsa29I	ATCGAT	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	514, 659, 666, 792
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	4 cut(s)	514, 659, 666, 792
BseGI	GGATG	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	410, 454
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	755
BshTI	ACCGGT	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	126, 608
BsiSI	CCGG	3 cut(s)	195, 216, 687
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	255, 456
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	126, 608
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	4 cut(s)	43, 72, 76, 407
BspACI	CCGC	3 cut(s)	108, 338, 491
BspANI	GGCC	1 cut(s)	225
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	304
BspHI	TCATGA	2 cut(s)	366, 696
BspLI	GGNNCC	2 cut(s)	226, 757
BspMI	ACCTGC	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	4 cut(s)	38, 71, 80, 415
BspT107I	GGYRCC	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	215
BsrGI	TGTACA	1 cut(s)	681
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	4 cut(s)	514, 659, 666, 792
BssMI	GATC	4 cut(s)	43, 72, 76, 407
BssSI	CACGAG	1 cut(s)	436
BssT1I	CCWWGG	2 cut(s)	659, 792
Bst2BI	CACGAG	1 cut(s)	436
Bst4CI	ACNGT	7 cut(s)	68, 94, 136, 281, 310, 359, 618
Bst6I	CTCTTC	3 cut(s)	276, 440, 859
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	5 cut(s)	157, 246, 489, 656, 675
BstF5I	GGATG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	304, 505
BstKTI	GATC	4 cut(s)	46, 75, 79, 410
BstMAI	GTCTC	2 cut(s)	255, 456
BstMBI	GATC	4 cut(s)	43, 72, 76, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	686
BstSFI	CTRYAG	1 cut(s)	382
BstUI	CGCG	1 cut(s)	304
BstV2I	GAAGAC	2 cut(s)	95, 420
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	656
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	4 cut(s)	181, 315, 333, 623
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	5 cut(s)	157, 246, 489, 656, 675
CciI	TCATGA	2 cut(s)	366, 696
CfoI	GCGC	2 cut(s)	304, 505
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	4 cut(s)	94, 224, 372, 663
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	306, 682, 756
CspAI	ACCGGT	1 cut(s)	215
CviAII	CATG	2 cut(s)	367, 697
CviQI	GTAC	3 cut(s)	306, 682, 756
DpnI	GATC	4 cut(s)	45, 74, 78, 409
DpnII	GATC	4 cut(s)	43, 72, 76, 407
DraIII	CACNNNGTG	1 cut(s)	690
Eam1104I	CTCTTC	3 cut(s)	276, 440, 859
EarI	CTCTTC	3 cut(s)	276, 440, 859
Ecl136II	GAGCTC	1 cut(s)	606
Eco130I	CCWWGG	2 cut(s)	659, 792
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	3 cut(s)	94, 372, 663
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	659, 792
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	659, 792
FaeI	CATG	2 cut(s)	370, 700
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	2 cut(s)	366, 696
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	663
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	2 cut(s)	57, 245
GlaI	GCGC	2 cut(s)	303, 504
GluI	GCNGC	1 cut(s)	109
GsuI	CTGGAG	2 cut(s)	607, 733
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	3 cut(s)	195, 216, 687
HhaI	GCGC	2 cut(s)	304, 505
Hin1II	CATG	2 cut(s)	370, 700
Hin6I	GCGC	2 cut(s)	302, 503
HinP1I	GCGC	2 cut(s)	302, 503
HinfI	GANTC	3 cut(s)	464, 497, 560
HpaII	CCGG	3 cut(s)	195, 216, 687
HphI	GGTGA	3 cut(s)	205, 542, 547
Hpy166II	GTNNAC	2 cut(s)	179, 684
Hpy188III	TCNNGA	7 cut(s)	38, 275, 353, 367, 697, 750, 835
Hpy8I	GTNNAC	2 cut(s)	179, 684
Hpy99I	CGWCG	1 cut(s)	359
HpyCH4III	ACNGT	7 cut(s)	68, 94, 136, 281, 310, 359, 618
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	7 cut(s)	4, 166, 524, 612, 632, 638, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	370, 700
HspAI	GCGC	2 cut(s)	302, 503
KpnI	GGTACC	1 cut(s)	759
Kzo9I	GATC	4 cut(s)	43, 72, 76, 407
LmnI	GCTCC	2 cut(s)	752, 794
LweI	GCATC	4 cut(s)	153, 641, 641, 647
MaeI	CTAG	2 cut(s)	57, 245
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	52, 211
MalI	GATC	4 cut(s)	45, 74, 78, 409
MboI	GATC	4 cut(s)	43, 72, 76, 407
MboII	GAAGA	8 cut(s)	53, 100, 263, 425, 457, 876, 888, 900
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	126, 608
MluCI	AATT	1 cut(s)	762
MlyI	GAGTC	3 cut(s)	458, 506, 569
MmeI	TCCRAC	3 cut(s)	50, 323, 790
Mph1103I	ATGCAT	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	887
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	3 cut(s)	195, 216, 687
MspR9I	CCNGG	1 cut(s)	688
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	889
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	688
NdeII	GATC	4 cut(s)	43, 72, 76, 407
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	370, 700
NlaIV	GGNNCC	2 cut(s)	226, 757
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	634
OliI	CACNNNNGTG	1 cut(s)	134
PagI	TCATGA	2 cut(s)	366, 696
PctI	GAATGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	887
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	3 cut(s)	458, 505, 568
PpsI	GAGTC	3 cut(s)	458, 505, 568
Psp124BI	GAGCTC	1 cut(s)	608
Psp1406I	AACGTT	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	226, 757
PspPI	GGNCC	4 cut(s)	94, 224, 372, 663
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	3 cut(s)	307, 683, 757
RsaNI	GTAC	3 cut(s)	306, 682, 756
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	608
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	4 cut(s)	43, 72, 76, 407
Sau96I	GGNCC	4 cut(s)	94, 224, 372, 663
SchI	GAGTC	3 cut(s)	458, 506, 569
ScrFI	CCNGG	1 cut(s)	688
SduI	GDGCHC	2 cut(s)	126, 608
SfaNI	GCATC	4 cut(s)	153, 641, 641, 647
SfcI	CTRYAG	1 cut(s)	382
SinI	GGWCC	3 cut(s)	94, 372, 663
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	762
SsiI	CCGC	3 cut(s)	108, 338, 491
SspMI	CTAG	2 cut(s)	57, 245
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	686
StyI	CCWWGG	2 cut(s)	659, 792
TaaI	ACNGT	7 cut(s)	68, 94, 136, 281, 310, 359, 618
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	75, 354
TasI	AATT	1 cut(s)	762
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	1 cut(s)	111
TscAI	CASTG	4 cut(s)	181, 315, 340, 623
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	355, 685
TspGWI	ACGGA	2 cut(s)	273, 566
TspRI	CASTG	4 cut(s)	181, 315, 340, 623
VpaK11BI	GGWCC	3 cut(s)	94, 372, 663
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	2 cut(s)	57, 245
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.