Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006595

Physical Location & Seq

Genomic Coordinates Forward (+)

44283498 .. 44285187

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0269600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTGTCGTTGAAGCTCCAGAAGCGGCTAGCCGCTAGCGTCCTCAAGTGCGGACGTGGCAAGGTCTGGCTCGACCCCAATGAAGGCAACGAAATCTCCATGGCCAATTCCAGGCAAAACATTAGGAAGCTCGTGAAGGATGGTTTCGTCATCCGGAAACCAACAAAGATCCACTCCCGTTCTCGTGCTCGGAGAATGGCAGTGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGCAAGGGTACCAGGGAGGCAAGGCTGCCAACTAAGATACTCTGGATGAGGAGGATGAGGGTACTGAGGCGCTTGCTCCGTAAGTACCGAGAATCCAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCTGATGGAGAGTATTCACAAGTCAAAGGCTGAGAAGGCAAGAGAGAAAACTCTGTCCGACCAGTTTGAGGCCAAACGTGCCAAAAACAAGGCTAGCAGAGAGAGGAAGTTAGCTCGTAGGGAGGAACGCTTGGCACAAGGACCTGGAGAGAGAGCAGCACCCACACCTGCGGGAGGAGCGAAGAAAGCTAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010035 GO:0010193 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046677 GO:0046777 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

202

Amino Acids

23.53

Weight (kDa)

11.6

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	2.2e-26	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	9.2e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70520 AT4G28670
fragaria_vesca	FvH4_4g26071 FvH4_4g26071 FvH4_4g26071
malus_domestica	MD13G1096000.v1.1 MD16G1097400.v1.1
prunus_persica	Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1
pyrus_communis	pycom13g08370 pycom13g08380 pycom13g08410
rosa_chinensis	RchiOBHm_Chr4g0433531
rosa_laevigata	RLG00000006745
rosa_multiflora	Rmu_sc0000312.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375050
rosa_rugosa	Rorug04G0269400 Rorug04G0269500 Rorug04G0269600
rosa_samantha	Rh4AG324200 Rh4BG332200 Rh4CG347500 Rh4DG328500
rosa_wichuraiana	Rw0G020170 Rw4G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
AatII	GACGTC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	586
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	4 cut(s)	25, 33, 51, 581
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	102, 204
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	5 cut(s)	250, 303, 326, 359, 371
AfiI	CCNNNNNNNGG	4 cut(s)	83, 111, 478, 584
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	13, 397
AjiI	CACGTC	1 cut(s)	56
AjnI	CCWGG	3 cut(s)	110, 251, 553
AluBI	AGCT	4 cut(s)	16, 130, 524, 599
AluI	AGCT	4 cut(s)	16, 130, 524, 599
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	163
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	3 cut(s)	102, 204, 480
ApeKI	GCWGC	2 cut(s)	265, 566
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	243, 312
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	391
AsuNHI	GCTAGC	3 cut(s)	28, 35, 503
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	2 cut(s)	104, 206
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	2 cut(s)	131, 183
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	252, 578
BccI	CCATC	2 cut(s)	134, 409
BciT130I	CCWGG	3 cut(s)	112, 253, 555
BfaI	CTAG	4 cut(s)	29, 36, 504, 600
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	4 cut(s)	26, 33, 266, 567
BlsI	GCNGC	4 cut(s)	27, 34, 267, 568
Bme1390I	CCNGG	3 cut(s)	112, 253, 555
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	3 cut(s)	112, 253, 555
BmtI	GCTAGC	3 cut(s)	32, 39, 507
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	99, 252
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 111, 478, 584
Bse1I	ACTGG	1 cut(s)	472
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	3 cut(s)	112, 253, 555
BseDI	CCNNGG	2 cut(s)	99, 252
BseGI	GGATG	4 cut(s)	145, 150, 291, 300
BseLI	CCNNNNNNNGG	4 cut(s)	83, 111, 478, 584
BseMII	CTCAG	2 cut(s)	296, 432
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	304, 600
BseXI	GCAGC	2 cut(s)	252, 578
BshFI	GGCC	3 cut(s)	104, 206, 482
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	4 cut(s)	83, 111, 478, 584
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	104, 206, 482
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	4 cut(s)	25, 33, 51, 581
BspANI	GGCC	3 cut(s)	104, 206, 482
BspCNI	CTCAG	2 cut(s)	297, 433
BspEI	TCCGGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	586
BspOI	GCTAGC	3 cut(s)	32, 39, 507
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	99, 252
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	220
BssSI	CACGAG	2 cut(s)	131, 183
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	2 cut(s)	131, 183
Bst2UI	CCWGG	3 cut(s)	112, 253, 555
BstACI	GRCGYC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	30, 37, 314, 505
BstDEI	CTNAG	3 cut(s)	273, 305, 441
BstDSI	CCRYGG	1 cut(s)	99
BstENI	CCTNNNNNAGG	1 cut(s)	582
BstF5I	GGATG	4 cut(s)	145, 150, 291, 300
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	243, 312
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 57, 446, 488, 587, 596
BstNI	CCWGG	3 cut(s)	112, 253, 555
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	110, 251, 553
BstV1I	GCAGC	2 cut(s)	252, 578
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	104, 206, 482
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	4 cut(s)	145, 150, 291, 300
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	4 cut(s)	30, 37, 314, 505
CfoI	GCGC	2 cut(s)	243, 312
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	5 cut(s)	249, 302, 325, 358, 370
CviAII	CATG	4 cut(s)	100, 355, 362, 373
CviQI	GTAC	5 cut(s)	249, 302, 325, 358, 370
DdeI	CTNAG	3 cut(s)	273, 305, 441
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	2 cut(s)	102, 204
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	110, 251, 553
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	103, 358, 365, 376
FaiI	YATR	6 cut(s)	101, 234, 356, 363, 368, 374
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	4 cut(s)	99, 354, 361, 372
FauI	CCCGC	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	26, 33, 266, 567
FokI	GGATG	4 cut(s)	137, 152, 298, 307
Fsp4HI	GCNGC	4 cut(s)	26, 33, 266, 567
FspBI	CTAG	4 cut(s)	29, 36, 504, 600
GlaI	GCGC	2 cut(s)	242, 311
GluI	GCNGC	4 cut(s)	26, 33, 266, 567
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	104, 206, 482
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	243, 312
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	103, 358, 365, 376
Hin6I	GCGC	2 cut(s)	241, 310
HinP1I	GCGC	2 cut(s)	241, 310
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	192, 469
Hpy188III	TCNNGA	6 cut(s)	19, 133, 154, 228, 283, 397
HpyAV	CCTTC	6 cut(s)	77, 130, 208, 370, 376, 439
HpyCH4IV	ACGT	3 cut(s)	55, 220, 487
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 57, 446, 488, 587, 596
HpyF3I	CTNAG	3 cut(s)	273, 305, 441
HpySE526I	ACGT	3 cut(s)	55, 220, 487
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	103, 358, 365, 376
HspAI	GCGC	2 cut(s)	241, 310
Kpn2I	TCCGGA	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	21, 321, 587
Lsp1109I	GCAGC	2 cut(s)	252, 578
MaeI	CTAG	4 cut(s)	29, 36, 504, 600
MaeII	ACGT	3 cut(s)	55, 220, 487
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	604
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	2 cut(s)	104, 206
MluCI	AATT	3 cut(s)	106, 342, 604
MluNI	TGGCCA	2 cut(s)	104, 206
MmeI	TCCRAC	1 cut(s)	492
Mox20I	TGGCCA	2 cut(s)	104, 206
MroI	TCCGGA	1 cut(s)	153
MscI	TGGCCA	2 cut(s)	104, 206
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	2 cut(s)	104, 206
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	3 cut(s)	112, 253, 555
MvaI	CCWGG	3 cut(s)	112, 253, 555
MwoI	GCNNNNNNNGC	6 cut(s)	22, 57, 446, 488, 587, 596
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	168
NheI	GCTAGC	3 cut(s)	28, 35, 503
NlaIII	CATG	4 cut(s)	103, 358, 365, 376
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	586
PciI	ACATGT	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	27, 34, 267, 568
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	3 cut(s)	110, 251, 553
PspGI	CCWGG	3 cut(s)	110, 251, 553
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	5 cut(s)	250, 303, 326, 359, 371
RsaNI	GTAC	5 cut(s)	249, 302, 325, 358, 370
RseI	CAYNNNNRTG	1 cut(s)	377
SatI	GCNGC	4 cut(s)	26, 33, 266, 567
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	551
ScrFI	CCNGG	3 cut(s)	112, 253, 555
SduI	GDGCHC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	106, 342, 604
SsiI	CCGC	4 cut(s)	25, 33, 51, 581
SspMI	CTAG	4 cut(s)	29, 36, 504, 600
StyD4I	CCNGG	3 cut(s)	110, 251, 553
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	3 cut(s)	58, 223, 490
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	106, 342, 604
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	28, 35
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	265, 566
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	96, 389
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	582
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	4 cut(s)	29, 36, 504, 600
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.