Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006595

Physical Location & Seq

Genomic Coordinates Reverse (-)

10161286 .. 10165670

Gene Structure 4385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGATGAAGAACTCCATCAAGTTATTCATTTCTCTCATCAATATCCTGCTATTGCCAGAAATAGCTCTGGCAGATCCAAGAACACAAACAGTCCAAGTAACCTGTGGCAATCAACTTGAGCACAACTCCACTGTCTTTGTTCCGAATTTCGTTGCTACAATGGCAAACATCAGCGGGCAAATGACAGCATCTGGGTACGGAGTGGCAGTCACTGGTTCAGGTCCTGATAGTAACTATGGCCTGGCTCAATGCTATGGAGATCTTTCTCTACAAGACTGTGTGCTGTGTTACGCCGAGGCACGTACAGTGCTACCTAAATGCTACCCTTATAACGGGGGTCGGATTTTCCTTGACGGGTGCTTCATGAGGTCTGAAAATTACAGCTTTTATGAGGAGTTTAGAGGACCAAACGACACGGCTGTGTGTGGGAACACAACTAGAAAGAGTTCGTTGTTTGAAGCTTCGGCTAGGCAGGCTGTGATGAGTACAGTTCAATCTGCGCCGAGCAACAGAGGGTATGCAAGGGCTCAGGTGGGTGTTAGTGGGACTGTGAATGAAACAGTTTATGTTCTGAGTGATTGTTGGAGGAGTTTGAATGACAGTTCTTGCAGACAATGTTTGGAAAATGCTTCTGAATCAGTATTGGGTTGCTTGCCTTGGTCTGAGGGGAGGGCATTAAACACTGGCTGCTTCATGAGGTACTCTGATACAGATTTTCTCAACAAGGAATTGGGAAGTGGGAGTTCTAGAGGTACCATTATTGTGATAGTGGTCTCAGTTGTCAGTTCCCTGGTTGTTTTGGTAGTTGGAGGAGTTATTGGATTTTATATCTGGAAGCACAGATATATACAAAAGAAAAGAAGAGGTTCCAATGACGCAGAAAAGATGGCGAAAACCCTCATCGACGGTAGCTTAAACTTTAAGTACTCTACAATTGAAAAGGCCACAGAATCTTTTGGCAGTGCCAACAAGCTTGGACAAGGAGGTTTCGGAACAGTTTATAAGGGAGTTTTGCCTGATGGGAGAGAGATTGCAGTAAAGAGGCTTTTCTTTAACAATAGGCATAGAGCAGCAGATTTCTATAATGAAATCAACATTATAAGCAGCGTGGAACACAAAAACTTGGTTAGATTGTTGGGTTGCAGTTGCTCAGGACCAGAAAGCCTTCTGGTCTATGAATACCTAGCCAACAAGAGTCTTGACCGCTTCATTTTCGATGAACAAAGAGGCAAAACACTGAACTGGGAGAAGAGATATGAGATCATTACAGGAACAGCAGAAGGTTTAGTCCATCTTCATGACAACTCTAAAAAAAGGATCATTCACAGAGACATAAAAGCCAGTAACATCCTTTTGGATTCACGGCTTCGTGCTAAGATTGCCGATTTTGGGTTAGCTAGGTCCTTCGAGGAAGATAAGAGTCACATTAGCACAGCTATTGCAGGAACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010035 GO:0010193 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046677 GO:0046777 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

485

Amino Acids

53.35

Weight (kDa)

8.64

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	35 - 127	1.9e-12	Salt stress response/antifungal
Stress-antifung	PF01657	142 - 236	1.8e-11	Salt stress response/antifungal
Pkinase	PF00069	322 - 482	9.3e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	323 - 475	8.3e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70520 AT4G28670
fragaria_vesca	FvH4_4g26071 FvH4_4g26071 FvH4_4g26071
malus_domestica	MD13G1096000.v1.1 MD16G1097400.v1.1
prunus_persica	Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1
pyrus_communis	pycom13g08370 pycom13g08380 pycom13g08410
rosa_chinensis	RchiOBHm_Chr4g0433531
rosa_laevigata	RLG00000006745
rosa_multiflora	Rmu_sc0000312.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375050
rosa_rugosa	Rorug04G0269400 Rorug04G0269500 Rorug04G0269600
rosa_samantha	Rh4AG324200 Rh4BG332200 Rh4CG347500 Rh4DG328500
rosa_wichuraiana	Rw0G020170 Rw4G028080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	330, 1002, 1100
Acc65I	GGTACC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	752
AciI	CCGC	2 cut(s)	174, 1204
AclWI	GGATC	2 cut(s)	68, 1325
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	6 cut(s)	197, 304, 487, 701, 754, 926
AfiI	CCNNNNNNNGG	2 cut(s)	332, 1389
AgsI	TTSAA	4 cut(s)	458, 494, 595, 938
AjnI	CCWGG	2 cut(s)	240, 789
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	7 cut(s)	65, 384, 461, 912, 973, 1397, 1436
AluI	AGCT	7 cut(s)	65, 384, 461, 912, 973, 1397, 1436
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	778, 1323
AlwI	GGATC	2 cut(s)	68, 1325
AlwNI	CAGNNNCTG	3 cut(s)	191, 212, 224
AoxI	GGCC	2 cut(s)	238, 942
ApeKI	GCWGC	3 cut(s)	687, 1070, 1104
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	3 cut(s)	445, 865, 1164
Asp718I	GGTACC	1 cut(s)	752
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	4 cut(s)	221, 404, 1154, 1401
AvaII	GGWCC	4 cut(s)	221, 404, 1154, 1401
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	674, 1082, 1116
BccI	CCATC	4 cut(s)	23, 880, 1013, 1299
BceAI	ACGGC	2 cut(s)	432, 1379
BciT130I	CCWGG	2 cut(s)	242, 791
BcoDI	GTCTC	2 cut(s)	778, 1323
BfaI	CTAG	5 cut(s)	438, 468, 747, 1184, 1398
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	3 cut(s)	688, 1071, 1105
BlsI	GCNGC	3 cut(s)	689, 1072, 1106
BmcAI	AGTACT	1 cut(s)	926
Bme1390I	CCNGG	2 cut(s)	242, 791
Bme18I	GGWCC	4 cut(s)	221, 404, 1154, 1401
BmgT120I	GGNCC	4 cut(s)	221, 404, 1154, 1401
BmiI	GGNNCC	2 cut(s)	754, 868
BmrFI	CCNGG	2 cut(s)	242, 791
BmrI	ACTGGG	1 cut(s)	1252
BmsI	GCATC	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	1252
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu10I	CCTNAGC	2 cut(s)	528, 1150
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	3 cut(s)	294, 656, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 1389
Bse1I	ACTGG	4 cut(s)	217, 688, 1247, 1341
BseBI	CCWGG	2 cut(s)	242, 791
BseDI	CCNNGG	3 cut(s)	294, 656, 789
BseGI	GGATG	1 cut(s)	1347
BseLI	CCNNNNNNNGG	2 cut(s)	332, 1389
BseMII	CTCAG	5 cut(s)	542, 563, 654, 789, 1164
BseNI	ACTGG	4 cut(s)	217, 688, 1247, 1341
BseRI	GAGGAG	3 cut(s)	407, 601, 825
BseXI	GCAGC	3 cut(s)	674, 1082, 1116
BshFI	GGCC	2 cut(s)	240, 944
BshNI	GGYRCC	1 cut(s)	752
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	2 cut(s)	332, 1389
BsmAI	GTCTC	2 cut(s)	778, 1323
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	240, 944
Bso31I	GGTCTC	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	123, 529
Bsp143I	GATC	4 cut(s)	73, 259, 1260, 1317
BspACI	CCGC	2 cut(s)	174, 1204
BspANI	GGCC	2 cut(s)	240, 944
BspCNI	CTCAG	5 cut(s)	541, 564, 655, 788, 1163
BspHI	TCATGA	3 cut(s)	363, 693, 1297
BspLI	GGNNCC	2 cut(s)	754, 868
BspPI	GGATC	2 cut(s)	68, 1325
BspT107I	GGYRCC	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	778
BsrI	ACTGG	4 cut(s)	217, 688, 1247, 1341
BssECI	CCNNGG	3 cut(s)	294, 656, 789
BssMI	GATC	4 cut(s)	73, 259, 1260, 1317
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	2 cut(s)	242, 791
Bst6I	CTCTTC	2 cut(s)	856, 1244
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	176, 474, 653
BstDEI	CTNAG	6 cut(s)	528, 572, 663, 775, 1150, 1374
BstF5I	GGATG	1 cut(s)	1347
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	4 cut(s)	76, 262, 1263, 1320
BstMAI	GTCTC	2 cut(s)	778, 1323
BstMBI	GATC	4 cut(s)	73, 259, 1260, 1317
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 473, 1379
BstNI	CCWGG	2 cut(s)	242, 791
BstSCI	CCNGG	2 cut(s)	240, 789
BstV1I	GCAGC	3 cut(s)	674, 1082, 1116
BstX2I	RGATCY	2 cut(s)	73, 259
BstYI	RGATCY	2 cut(s)	73, 259
BsuRI	GGCC	2 cut(s)	240, 944
BtsCI	GGATG	1 cut(s)	1347
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	6 cut(s)	129, 210, 312, 681, 967, 1235
Cac8I	GCNNGC	3 cut(s)	176, 474, 653
CaiI	CAGNNNCTG	3 cut(s)	191, 212, 224
CciI	TCATGA	3 cut(s)	363, 693, 1297
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	4 cut(s)	221, 404, 1154, 1401
CseI	GACGC	1 cut(s)	884
Csp6I	GTAC	6 cut(s)	196, 303, 486, 700, 753, 925
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	3 cut(s)	364, 694, 1298
CviQI	GTAC	6 cut(s)	196, 303, 486, 700, 753, 925
DdeI	CTNAG	6 cut(s)	528, 572, 663, 775, 1150, 1374
DpnI	GATC	4 cut(s)	75, 261, 1262, 1319
DpnII	GATC	4 cut(s)	73, 259, 1260, 1317
Eam1104I	CTCTTC	2 cut(s)	856, 1244
EarI	CTCTTC	2 cut(s)	856, 1244
Eco130I	CCWWGG	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	778
Eco47I	GGWCC	4 cut(s)	221, 404, 1154, 1401
EcoO109I	RGGNCCY	2 cut(s)	221, 1401
EcoRII	CCWGG	2 cut(s)	240, 789
EcoT14I	CCWWGG	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	3 cut(s)	367, 697, 1301
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	3 cut(s)	363, 693, 1297
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	688, 1071, 1105
FokI	GGATG	1 cut(s)	1334
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	3 cut(s)	688, 1071, 1105
FspBI	CTAG	5 cut(s)	438, 468, 747, 1184, 1398
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	3 cut(s)	688, 1071, 1105
HaeIII	GGCC	2 cut(s)	240, 944
HgaI	GACGC	1 cut(s)	884
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	367, 697, 1301
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	2 cut(s)	459, 971
HinfI	GANTC	5 cut(s)	635, 950, 1195, 1358, 1420
Hpy188I	TCNGA	8 cut(s)	144, 342, 373, 573, 634, 664, 706, 992
Hpy188III	TCNNGA	8 cut(s)	224, 364, 694, 747, 832, 1152, 1199, 1298
Hpy99I	CGWCG	1 cut(s)	908
HpyAV	CCTTC	3 cut(s)	1175, 1274, 1414
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	5 cut(s)	521, 609, 1034, 1143, 1442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 473, 1379
HpyF3I	CTNAG	6 cut(s)	528, 572, 663, 775, 1150, 1374
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	367, 697, 1301
HspAI	GCGC	1 cut(s)	500
KpnI	GGTACC	1 cut(s)	756
Kzo9I	GATC	4 cut(s)	73, 259, 1260, 1317
Lsp1109I	GCAGC	3 cut(s)	674, 1082, 1116
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	5 cut(s)	438, 468, 747, 1184, 1398
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	6 cut(s)	97, 208, 230, 287, 1343, 1421
MalI	GATC	4 cut(s)	75, 261, 1262, 1319
MboI	GATC	4 cut(s)	73, 259, 1260, 1317
MboII	GAAGA	5 cut(s)	19, 873, 1261, 1286, 1424
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	73, 259
MhlI	GDGCHC	2 cut(s)	123, 529
MluCI	AATT	4 cut(s)	145, 376, 728, 933
MlyI	GAGTC	2 cut(s)	1204, 1429
MmeI	TCCRAC	3 cut(s)	320, 563, 787
MroXI	GAANNNNTTC	3 cut(s)	445, 865, 1164
MseI	TTAA	4 cut(s)	677, 914, 921, 1053
MslI	CAYNNNNRTG	3 cut(s)	419, 761, 1296
MspA1I	CMGCKG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	242, 791
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	2 cut(s)	242, 791
MwoI	GCNNNNNNNGC	3 cut(s)	161, 473, 1379
NdeII	GATC	4 cut(s)	73, 259, 1260, 1317
NlaIII	CATG	3 cut(s)	367, 697, 1301
NlaIV	GGNNCC	2 cut(s)	754, 868
NmeAIII	GCCGAG	2 cut(s)	319, 528
NmuCI	GTSAC	2 cut(s)	208, 1421
OliI	CACNNNNGTG	1 cut(s)	419
PagI	TCATGA	3 cut(s)	363, 693, 1297
PdmI	GAANNNNTTC	3 cut(s)	445, 865, 1164
PfeI	GAWTC	3 cut(s)	635, 950, 1358
PkrI	GCNGC	3 cut(s)	689, 1072, 1106
PleI	GAGTC	2 cut(s)	1203, 1428
PpsI	GAGTC	2 cut(s)	1203, 1428
Ppu21I	YACGTR	1 cut(s)	302
PpuMI	RGGWCCY	2 cut(s)	221, 1401
PsiI	TTATAA	3 cut(s)	330, 1002, 1100
Psp5II	RGGWCCY	2 cut(s)	221, 1401
Psp6I	CCWGG	2 cut(s)	240, 789
PspGI	CCWGG	2 cut(s)	240, 789
PspN4I	GGNNCC	2 cut(s)	754, 868
PspPI	GGNCC	4 cut(s)	221, 404, 1154, 1401
PspPPI	RGGWCCY	2 cut(s)	221, 1401
PstNI	CAGNNNCTG	3 cut(s)	191, 212, 224
PsuI	RGATCY	2 cut(s)	73, 259
RsaI	GTAC	6 cut(s)	197, 304, 487, 701, 754, 926
RsaNI	GTAC	6 cut(s)	196, 303, 486, 700, 753, 925
RseI	CAYNNNNRTG	3 cut(s)	419, 761, 1296
SaqAI	TTAA	4 cut(s)	677, 914, 921, 1053
SatI	GCNGC	3 cut(s)	688, 1071, 1105
Sau3AI	GATC	4 cut(s)	73, 259, 1260, 1317
Sau96I	GGNCC	4 cut(s)	221, 404, 1154, 1401
ScaI	AGTACT	1 cut(s)	926
SchI	GAGTC	2 cut(s)	1204, 1429
ScrFI	CCNGG	2 cut(s)	242, 791
SduI	GDGCHC	2 cut(s)	123, 529
SfaNI	GCATC	1 cut(s)	197
SinI	GGWCC	4 cut(s)	221, 404, 1154, 1401
SmiMI	CAYNNNNRTG	3 cut(s)	419, 761, 1296
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	4 cut(s)	145, 376, 728, 933
SsiI	CCGC	2 cut(s)	174, 1204
SspMI	CTAG	5 cut(s)	438, 468, 747, 1184, 1398
StyD4I	CCNGG	2 cut(s)	240, 789
StyI	CCWWGG	1 cut(s)	656
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	903, 1215, 1407
TasI	AATT	4 cut(s)	145, 376, 728, 933
TatI	WGTACW	2 cut(s)	485, 924
TfiI	GAWTC	3 cut(s)	635, 950, 1358
Tru1I	TTAA	4 cut(s)	677, 914, 921, 1053
Tru9I	TTAA	4 cut(s)	677, 914, 921, 1053
TscAI	CASTG	6 cut(s)	136, 217, 312, 688, 967, 1242
TseFI	GTSAC	2 cut(s)	208, 1421
TseI	GCWGC	3 cut(s)	687, 1070, 1104
Tsp45I	GTSAC	2 cut(s)	208, 1421
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	6 cut(s)	136, 217, 312, 688, 967, 1242
VpaK11BI	GGWCC	4 cut(s)	221, 404, 1154, 1401
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmnI	GAANNNNTTC	3 cut(s)	445, 865, 1164
XspI	CTAG	5 cut(s)	438, 468, 747, 1184, 1398
ZrmI	AGTACT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.