Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006595

Physical Location & Seq

Genomic Coordinates Forward (+)

60546969 .. 60551868

Gene Structure 4900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG347500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGATGAAGAAATCCATCAAGTTATTCATTTCTCTCATCAATATCCTGCTATTGCTAGAAATAGCTCTGGCAGATCCAAGAACACAAACAGTCCAAGTAACCTGTGGCAATCAACTTGAGCACAACTCCACTGTCTTTGTTCCGAATTTCGTTGCTACAATGGCAAACATCAGTGGGCAAATGACAGCTTCTGGGTACGGAGTGGCAGTCACTGGTTCAGGTCCTGATATTAACTATGGCCTGGCTCAATGCTATGGAGATCTTTCTCTACAAGACTGTGTGCTGTGTTACGCCGAGGCACGTACAGTGCTACCTAAATGCTACCCTTATAACGGGGGTCGGATTTTCCTTGACGGGTGCTTCATGAGGTCTGAAAATTACAGCTTTTATGAGGAGTTTAGAGGACCAAACGACACAGCTGTGTGTGGGAACACAACTAGAAAGAGTTCGTTGTTTGAAGCTTCAGCTAGGCAGGCTGTGATGAGTATTGTTCAATCTGCGCCGAGCAACAGAGGGTATGCAAGGGCTCAGGTGGGTGTTAGTGGGACTGTGAATGAAACAGTTTATGTTCTGAGTGATTGTTGGAGGAGTTTGAATGAGAGTTCTTGCAGACAATGTTTGGAAAATGCTTCTGAATCAGTATTGGGTTGCTTGCCTTGGTCTGAGGGGAGGGCATTAAACACTGGCTGCTTCATGAGGTACTCTGATACAGATTTTCTCAACAAGGAATTGGGAAGTGGGAGTTCTAGAGGTACCATTATTGTGATAGTGGTCTCAGTTGTCAGTTCCCTGGTTGTTTTGGTAGTTGGAGGAGTTATTGGATTTTATATCTGGAAGCACAGATATATACAAAAGAAAAGAAGAGGTTCCAATGATGCAGAAAAGATGGCGAAAACCCTCAATGACAGTAGCTTAAACTTTAAGTACTCTACAATTGAAAAGGCCACAGAATCTTTTGGCAGTGCCAACAAGCTTGGACAAGGAGGTTTCGGAACAGTTTATAAGGGAGTTTTGCCTGATGGGAGAGAGATTGCAGTAAAGAGGCTTTTCTTTAACAATAGGCATAGAGCAGCAGATTTCTATAATGAAATCAACATTATAAGCAGCGTGGAACACAAAAACTTGGTTAGATTGTTGGGTTGCAGTTGCTCAGGACCAGAAAGCCTTCTGGTCTATGAATACCTAGCCAACAAGAGTCTTGACCGCTTCATTTTCGGTAATTTACTTCACTTTCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010035 GO:0010193 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046677 GO:0046777 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

413

Amino Acids

45.43

Weight (kDa)

8.56

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	35 - 127	2.9e-12	Salt stress response/antifungal
Stress-antifung	PF01657	142 - 236	8.5e-12	Salt stress response/antifungal
Pkinase	PF00069	322 - 404	9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	323 - 404	4e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70520 AT4G28670
fragaria_vesca	FvH4_4g26071 FvH4_4g26071 FvH4_4g26071
malus_domestica	MD13G1096000.v1.1 MD16G1097400.v1.1
prunus_persica	Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1
pyrus_communis	pycom13g08370 pycom13g08380 pycom13g08410
rosa_chinensis	RchiOBHm_Chr4g0433531
rosa_laevigata	RLG00000006745
rosa_multiflora	Rmu_sc0000312.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375050
rosa_rugosa	Rorug04G0269400 Rorug04G0269500 Rorug04G0269600
rosa_samantha	Rh4AG324200 Rh4BG332200 Rh4CG347500 Rh4DG328500
rosa_wichuraiana	Rw0G020170 Rw4G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	330, 1002, 1100
Acc65I	GGTACC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	752
AciI	CCGC	1 cut(s)	1204
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	5 cut(s)	197, 304, 701, 754, 926
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	458, 494, 595, 938
AjnI	CCWGG	2 cut(s)	240, 789
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	8 cut(s)	65, 188, 384, 419, 461, 467, 912, 973
AluI	AGCT	8 cut(s)	65, 188, 384, 419, 461, 467, 912, 973
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	778
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	3 cut(s)	191, 212, 224
AoxI	GGCC	2 cut(s)	238, 942
ApeKI	GCWGC	3 cut(s)	687, 1070, 1104
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	3 cut(s)	445, 865, 1164
Asp718I	GGTACC	1 cut(s)	752
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	3 cut(s)	221, 404, 1154
AvaII	GGWCC	3 cut(s)	221, 404, 1154
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	674, 1082, 1116
BccI	CCATC	3 cut(s)	23, 880, 1013
BciT130I	CCWGG	2 cut(s)	242, 791
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	5 cut(s)	56, 438, 468, 747, 1184
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	3 cut(s)	688, 1071, 1105
BlsI	GCNGC	3 cut(s)	689, 1072, 1106
BmcAI	AGTACT	1 cut(s)	926
Bme1390I	CCNGG	2 cut(s)	242, 791
Bme18I	GGWCC	3 cut(s)	221, 404, 1154
BmgT120I	GGNCC	3 cut(s)	221, 404, 1154
BmiI	GGNNCC	2 cut(s)	754, 868
BmrFI	CCNGG	2 cut(s)	242, 791
BmsI	GCATC	1 cut(s)	865
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu10I	CCTNAGC	2 cut(s)	528, 1150
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	3 cut(s)	294, 656, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	217, 688
BseBI	CCWGG	2 cut(s)	242, 791
BseDI	CCNNGG	3 cut(s)	294, 656, 789
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	5 cut(s)	542, 563, 654, 789, 1164
BseNI	ACTGG	2 cut(s)	217, 688
BseRI	GAGGAG	3 cut(s)	407, 601, 825
BseXI	GCAGC	3 cut(s)	674, 1082, 1116
BshFI	GGCC	2 cut(s)	240, 944
BshNI	GGYRCC	1 cut(s)	752
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	778
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	240, 944
Bso31I	GGTCTC	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	123, 529
Bsp143I	GATC	2 cut(s)	73, 259
BspACI	CCGC	1 cut(s)	1204
BspANI	GGCC	2 cut(s)	240, 944
BspCNI	CTCAG	5 cut(s)	541, 564, 655, 788, 1163
BspHI	TCATGA	2 cut(s)	363, 693
BspLI	GGNNCC	2 cut(s)	754, 868
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	778
BsrI	ACTGG	2 cut(s)	217, 688
BssECI	CCNNGG	3 cut(s)	294, 656, 789
BssMI	GATC	2 cut(s)	73, 259
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	2 cut(s)	242, 791
Bst4CI	ACNGT	8 cut(s)	91, 133, 278, 307, 550, 562, 908, 997
Bst6I	CTCTTC	1 cut(s)	856
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	474, 653
BstDEI	CTNAG	5 cut(s)	528, 572, 663, 775, 1150
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	2 cut(s)	76, 262
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	2 cut(s)	73, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 473
BstNI	CCWGG	2 cut(s)	242, 791
BstSCI	CCNGG	2 cut(s)	240, 789
BstV1I	GCAGC	3 cut(s)	674, 1082, 1116
BstX2I	RGATCY	2 cut(s)	73, 259
BstYI	RGATCY	2 cut(s)	73, 259
BsuRI	GGCC	2 cut(s)	240, 944
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	6 cut(s)	129, 178, 210, 312, 681, 967
Cac8I	GCNNGC	2 cut(s)	474, 653
CaiI	CAGNNNCTG	3 cut(s)	191, 212, 224
CciI	TCATGA	2 cut(s)	363, 693
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	221, 404, 1154
Csp6I	GTAC	5 cut(s)	196, 303, 700, 753, 925
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	3 cut(s)	364, 694, 1235
CviQI	GTAC	5 cut(s)	196, 303, 700, 753, 925
DdeI	CTNAG	5 cut(s)	528, 572, 663, 775, 1150
DpnI	GATC	2 cut(s)	75, 261
DpnII	GATC	2 cut(s)	73, 259
Eam1104I	CTCTTC	1 cut(s)	856
EarI	CTCTTC	1 cut(s)	856
Eco130I	CCWWGG	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	778
Eco47I	GGWCC	3 cut(s)	221, 404, 1154
Eco57I	CTGAAG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	240, 789
EcoT14I	CCWWGG	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	3 cut(s)	367, 697, 1238
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	3 cut(s)	363, 693, 1234
Fnu4HI	GCNGC	3 cut(s)	688, 1071, 1105
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	3 cut(s)	688, 1071, 1105
FspBI	CTAG	5 cut(s)	56, 438, 468, 747, 1184
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	3 cut(s)	688, 1071, 1105
HaeIII	GGCC	2 cut(s)	240, 944
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	367, 697, 1238
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	2 cut(s)	459, 971
HinfI	GANTC	3 cut(s)	635, 950, 1195
Hpy188I	TCNGA	8 cut(s)	144, 342, 373, 573, 634, 664, 706, 992
Hpy188III	TCNNGA	7 cut(s)	224, 364, 694, 747, 832, 1152, 1199
HpyAV	CCTTC	1 cut(s)	1175
HpyCH4III	ACNGT	8 cut(s)	91, 133, 278, 307, 550, 562, 908, 997
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	5 cut(s)	521, 609, 878, 1034, 1143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 473
HpyF3I	CTNAG	5 cut(s)	528, 572, 663, 775, 1150
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	367, 697, 1238
HspAI	GCGC	1 cut(s)	500
KpnI	GGTACC	1 cut(s)	756
Kzo9I	GATC	2 cut(s)	73, 259
Lsp1109I	GCAGC	3 cut(s)	674, 1082, 1116
LweI	GCATC	1 cut(s)	865
MaeI	CTAG	5 cut(s)	56, 438, 468, 747, 1184
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	3 cut(s)	97, 208, 287
MalI	GATC	2 cut(s)	75, 261
MboI	GATC	2 cut(s)	73, 259
MboII	GAAGA	2 cut(s)	19, 873
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	73, 259
MhlI	GDGCHC	2 cut(s)	123, 529
MluCI	AATT	5 cut(s)	145, 376, 728, 933, 1219
MlyI	GAGTC	1 cut(s)	1204
MmeI	TCCRAC	3 cut(s)	320, 563, 787
MroXI	GAANNNNTTC	3 cut(s)	445, 865, 1164
MseI	TTAA	6 cut(s)	231, 677, 914, 921, 1053, 1240
MslI	CAYNNNNRTG	3 cut(s)	419, 761, 1233
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	242, 791
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	2 cut(s)	242, 791
MwoI	GCNNNNNNNGC	2 cut(s)	161, 473
NdeII	GATC	2 cut(s)	73, 259
NlaIII	CATG	3 cut(s)	367, 697, 1238
NlaIV	GGNNCC	2 cut(s)	754, 868
NmeAIII	GCCGAG	2 cut(s)	319, 528
NmuCI	GTSAC	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	419
PagI	TCATGA	2 cut(s)	363, 693
PdmI	GAANNNNTTC	3 cut(s)	445, 865, 1164
PfeI	GAWTC	2 cut(s)	635, 950
PkrI	GCNGC	3 cut(s)	689, 1072, 1106
PleI	GAGTC	1 cut(s)	1203
PpsI	GAGTC	1 cut(s)	1203
Ppu21I	YACGTR	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	221
PsiI	TTATAA	3 cut(s)	330, 1002, 1100
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	240, 789
PspGI	CCWGG	2 cut(s)	240, 789
PspN4I	GGNNCC	2 cut(s)	754, 868
PspPI	GGNCC	3 cut(s)	221, 404, 1154
PspPPI	RGGWCCY	1 cut(s)	221
PstNI	CAGNNNCTG	3 cut(s)	191, 212, 224
PsuI	RGATCY	2 cut(s)	73, 259
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	5 cut(s)	197, 304, 701, 754, 926
RsaNI	GTAC	5 cut(s)	196, 303, 700, 753, 925
RseI	CAYNNNNRTG	3 cut(s)	419, 761, 1233
SaqAI	TTAA	6 cut(s)	231, 677, 914, 921, 1053, 1240
SatI	GCNGC	3 cut(s)	688, 1071, 1105
Sau3AI	GATC	2 cut(s)	73, 259
Sau96I	GGNCC	3 cut(s)	221, 404, 1154
ScaI	AGTACT	1 cut(s)	926
SchI	GAGTC	1 cut(s)	1204
ScrFI	CCNGG	2 cut(s)	242, 791
SduI	GDGCHC	2 cut(s)	123, 529
SfaNI	GCATC	1 cut(s)	865
SinI	GGWCC	3 cut(s)	221, 404, 1154
SmiMI	CAYNNNNRTG	3 cut(s)	419, 761, 1233
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	5 cut(s)	145, 376, 728, 933, 1219
SsiI	CCGC	1 cut(s)	1204
SspMI	CTAG	5 cut(s)	56, 438, 468, 747, 1184
StyD4I	CCNGG	2 cut(s)	240, 789
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	8 cut(s)	91, 133, 278, 307, 550, 562, 908, 997
TaiI	ACGT	1 cut(s)	304
TasI	AATT	5 cut(s)	145, 376, 728, 933, 1219
TatI	WGTACW	1 cut(s)	924
TfiI	GAWTC	2 cut(s)	635, 950
Tru1I	TTAA	6 cut(s)	231, 677, 914, 921, 1053, 1240
Tru9I	TTAA	6 cut(s)	231, 677, 914, 921, 1053, 1240
TscAI	CASTG	6 cut(s)	136, 178, 217, 312, 688, 967
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	3 cut(s)	687, 1070, 1104
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	9 cut(s)	16, 20, 352, 570, 682, 1101, 1191, 1198, 1223
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	6 cut(s)	136, 178, 217, 312, 688, 967
VpaK11BI	GGWCC	3 cut(s)	221, 404, 1154
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmnI	GAANNNNTTC	3 cut(s)	445, 865, 1164
XspI	CTAG	5 cut(s)	56, 438, 468, 747, 1184
ZrmI	AGTACT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.