Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006595

Physical Location & Seq

Genomic Coordinates Forward (+)

44260062 .. 44262441

Gene Structure 2380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTGTGGAGGTGCTATCATTTCCGACTTCACCGAGGCCAAGCGTGGCTGGAAGCTGACCGCTGAGGGCCTCTCGTCTGAGCTTGACACCATCTCTGACCTCCTTGGCTTGGACTCTTCCAACAACAACCGCCAGGTTCTGCACCACAAGCTCTCTCAGAAGGCAAAGGTGGACCCAAATCCAGTCACCAAAGTTGCAGTGTCGAGTGAAATTAAGGAGAAGAAGACAAGTATAGGAGTTGCAGAGGATGGGAAGACGAAGAGAGTGAGGAAGAACATCTACAGAGGAATAAGGCAGAGGCCATGGGGCAAATGGGCGGCCGAGATTCGCGACCCGCACAAAGGCGTAAGAGTCTGGCTCGGAACCTTCAACACACCCGAGGAAGCTGCTCGGGCCTATGATGAAGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCTCCACAACCTGCCCCGGTTCCTGCTCCGGCTCCGGCTCCGGCTTCGGCCCAGCTCCAGCCACCCTCCAAGAAGCGGTGCATGGCTCTCGAGTCGACTGCACCAGCTATGATGGGTATGGAGCCTTACTATCCTTCATTCCAGAATGAGTTCTACTATAAGAGTGAGACTGCTGCTGATCACCATGAGTGTGAGCTGAAAGAGCAAATCTCGAGCTTGGAGTCTTTCCTGGGCCTGGATGAGTCAGTGTCGTCGAATGAGGTGATGAGTGGACTCGGAATCGGTGAGCCGGACTCAGTGGACCTGTGGATGCTGGATGACCTGGTTACACACGGTCGTGAGCATCAGCTCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010035 GO:0010193 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046677 GO:0046777 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

268

Amino Acids

29.66

Weight (kDa)

6.41

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	94 - 142	5.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70520 AT4G28670
fragaria_vesca	FvH4_4g26071 FvH4_4g26071 FvH4_4g26071
malus_domestica	MD13G1096000.v1.1 MD16G1097400.v1.1
prunus_persica	Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1 Prupe.1G249400_v2.0.a1
pyrus_communis	pycom13g08370 pycom13g08380 pycom13g08410
rosa_chinensis	RchiOBHm_Chr4g0433531
rosa_laevigata	RLG00000006745
rosa_multiflora	Rmu_sc0000312.1_g000009
rosa_roxburghii	Rroxscaffold_5G00375050
rosa_rugosa	Rorug04G0269400 Rorug04G0269500 Rorug04G0269600
rosa_samantha	Rh4AG324200 Rh4BG332200 Rh4CG347500 Rh4DG328500
rosa_wichuraiana	Rw0G020170 Rw4G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	542
AccII	CGCG	2 cut(s)	330, 423
AciI	CCGC	8 cut(s)	60, 130, 317, 335, 408, 421, 423, 523
AcoI	YGGCCR	1 cut(s)	318
AfiI	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	4 cut(s)	132, 675, 681, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AleI	CACNNNNGTG	1 cut(s)	783
Alw26I	GTCTC	1 cut(s)	608
AlwNI	CAGNNNCTG	1 cut(s)	139
Ama87I	CYCGRG	4 cut(s)	377, 390, 536, 658
AoxI	GGCC	8 cut(s)	36, 67, 299, 318, 393, 432, 495, 679
ApeKI	GCWGC	2 cut(s)	386, 620
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	22, 178, 620, 721, 743
AvaI	CYCGRG	4 cut(s)	377, 390, 536, 658
AvaII	GGWCC	2 cut(s)	172, 748
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BauI	CACGAG	1 cut(s)	797
BbsI	GAAGAC	2 cut(s)	230, 260
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	373, 607
BccI	CCATC	3 cut(s)	98, 242, 553
BcgI	CGANNNNNNTGC	6 cut(s)	368, 402, 517, 527, 551, 561
BciT130I	CCWGG	4 cut(s)	134, 677, 683, 770
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	5 cut(s)	318, 387, 408, 424, 621
BlsI	GCNGC	5 cut(s)	319, 388, 409, 425, 622
Bme1390I	CCNGG	5 cut(s)	134, 464, 677, 683, 770
Bme18I	GGWCC	2 cut(s)	172, 748
BmeT110I	CYCGRG	4 cut(s)	377, 390, 536, 658
BmgT120I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
BmiI	GGNNCC	6 cut(s)	174, 364, 468, 480, 486, 570
BmrFI	CCNGG	5 cut(s)	134, 464, 677, 683, 770
BmsI	GCATC	3 cut(s)	426, 747, 799
BpiI	GAAGAC	2 cut(s)	230, 260
BplI	GAGNNNNNCTC	8 cut(s)	56, 88, 342, 374, 641, 673, 725, 757
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	464
BsaJI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	4 cut(s)	134, 677, 683, 770
BseDI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 676
BseGI	GGATG	5 cut(s)	253, 417, 691, 762, 769
BseLI	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
BseMII	CTCAG	4 cut(s)	54, 69, 170, 756
BseNI	ACTGG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	373, 607
BseYI	CCCAGC	1 cut(s)	498
BsgI	GTGCAG	2 cut(s)	125, 531
Bsh1236I	CGCG	2 cut(s)	330, 423
Bsh1285I	CGRYCG	2 cut(s)	321, 784
BshFI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BsiEI	CGRYCG	2 cut(s)	321, 784
BsiHKCI	CYCGRG	4 cut(s)	377, 390, 536, 658
BsiSI	CCGG	5 cut(s)	464, 476, 482, 488, 737
BslI	CCNNNNNNNGG	4 cut(s)	109, 341, 522, 682
BsmAI	GTCTC	1 cut(s)	608
BsnI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BsoBI	CYCGRG	4 cut(s)	377, 390, 536, 658
Bsp143I	GATC	1 cut(s)	625
Bsp19I	CCATGG	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	8 cut(s)	60, 130, 317, 335, 408, 421, 423, 523
BspANI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BspCNI	CTCAG	4 cut(s)	55, 70, 169, 755
BspFNI	CGCG	2 cut(s)	330, 423
BspLI	GGNNCC	6 cut(s)	174, 364, 468, 480, 486, 570
BspMI	ACCTGC	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	7 cut(s)	33, 103, 302, 378, 421, 462, 676
BssMI	GATC	1 cut(s)	625
BssSI	CACGAG	1 cut(s)	797
BssT1I	CCWWGG	2 cut(s)	103, 302
Bst2BI	CACGAG	1 cut(s)	797
Bst2UI	CCWGG	4 cut(s)	134, 677, 683, 770
Bst4CI	ACNGT	1 cut(s)	782
Bst6I	CTCTTC	2 cut(s)	121, 254
BstDEI	CTNAG	4 cut(s)	63, 78, 156, 742
BstDSI	CCRYGG	2 cut(s)	302, 421
BstF5I	GGATG	5 cut(s)	253, 417, 691, 762, 769
BstFNI	CGCG	2 cut(s)	330, 423
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	1 cut(s)	625
BstMCI	CGRYCG	2 cut(s)	321, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 392, 423, 649
BstNI	CCWGG	4 cut(s)	134, 677, 683, 770
BstSCI	CCNGG	5 cut(s)	132, 462, 675, 681, 768
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	330, 423
BstV1I	GCAGC	2 cut(s)	373, 607
BstV2I	GAAGAC	2 cut(s)	230, 260
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
BtgI	CCRYGG	2 cut(s)	302, 421
BtsCI	GGATG	5 cut(s)	253, 417, 691, 762, 769
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 699, 750
BtuMI	TCGCGA	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	466
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
Cfr42I	CCGCGG	1 cut(s)	424
CsiI	ACCWGGT	1 cut(s)	768
CviAII	CATG	3 cut(s)	303, 529, 632
DdeI	CTNAG	4 cut(s)	63, 78, 156, 742
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	121, 254
EarI	CTCTTC	2 cut(s)	121, 254
EclXI	CGGCCG	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	103, 302
Eco47I	GGWCC	2 cut(s)	172, 748
Eco52I	CGGCCG	1 cut(s)	318
Eco88I	CYCGRG	4 cut(s)	377, 390, 536, 658
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	132, 675, 681, 768
EcoT14I	CCWWGG	2 cut(s)	103, 302
ErhI	CCWWGG	2 cut(s)	103, 302
FaeI	CATG	3 cut(s)	306, 532, 635
FaiI	YATR	8 cut(s)	233, 304, 399, 530, 557, 566, 606, 633
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	3 cut(s)	302, 528, 631
FauI	CCCGC	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	5 cut(s)	318, 387, 408, 424, 621
FokI	GGATG	5 cut(s)	260, 404, 698, 769, 776
Fsp4HI	GCNGC	5 cut(s)	318, 387, 408, 424, 621
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	5 cut(s)	318, 387, 408, 424, 621
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	8 cut(s)	38, 69, 301, 320, 395, 434, 497, 681
HapII	CCGG	5 cut(s)	464, 476, 482, 488, 737
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	3 cut(s)	306, 532, 635
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	9 cut(s)	113, 325, 351, 539, 668, 689, 720, 726, 740
HpaII	CCGG	5 cut(s)	464, 476, 482, 488, 737
HphI	GGTGA	5 cut(s)	22, 178, 620, 721, 743
Hpy166II	GTNNAC	4 cut(s)	172, 543, 719, 748
Hpy188I	TCNGA	6 cut(s)	25, 79, 97, 159, 362, 725
Hpy188III	TCNNGA	5 cut(s)	329, 536, 589, 658, 785
Hpy8I	GTNNAC	4 cut(s)	172, 543, 719, 748
Hpy99I	CGWCG	1 cut(s)	703
HpyAV	CCTTC	3 cut(s)	154, 376, 591
HpyCH4III	ACNGT	1 cut(s)	782
HpyCH4V	TGCA	5 cut(s)	142, 197, 242, 528, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 392, 423, 649
HpyF3I	CTNAG	4 cut(s)	63, 78, 156, 742
Hsp92II	CATG	3 cut(s)	306, 532, 635
HspAI	GCGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	625
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	5 cut(s)	478, 484, 490, 507, 568
Lsp1109I	GCAGC	2 cut(s)	373, 607
LweI	GCATC	3 cut(s)	426, 747, 799
MabI	ACCWGGT	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	184, 772
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	6 cut(s)	108, 232, 235, 265, 271, 283
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	7 cut(s)	107, 360, 548, 677, 698, 714, 734
MmeI	TCCRAC	2 cut(s)	48, 144
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	636, 783
MspA1I	CMGCKG	2 cut(s)	62, 423
MspI	CCGG	5 cut(s)	464, 476, 482, 488, 737
MspR9I	CCNGG	5 cut(s)	134, 464, 677, 683, 770
MvaI	CCWGG	4 cut(s)	134, 677, 683, 770
MvnI	CGCG	2 cut(s)	330, 423
MwoI	GCNNNNNNNGC	4 cut(s)	148, 392, 423, 649
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	3 cut(s)	306, 532, 635
NlaIV	GGNNCC	6 cut(s)	174, 364, 468, 480, 486, 570
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	184
NruI	TCGCGA	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	783
PaeR7I	CTCGAG	2 cut(s)	536, 658
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	325, 726
PkrI	GCNGC	5 cut(s)	319, 388, 409, 425, 622
PleI	GAGTC	7 cut(s)	107, 359, 547, 676, 697, 714, 734
PpsI	GAGTC	7 cut(s)	107, 359, 547, 676, 697, 714, 734
Psp6I	CCWGG	4 cut(s)	132, 675, 681, 768
PspFI	CCCAGC	1 cut(s)	498
PspGI	CCWGG	4 cut(s)	132, 675, 681, 768
PspN4I	GGNNCC	6 cut(s)	174, 364, 468, 480, 486, 570
PspPI	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
PstNI	CAGNNNCTG	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	330
RseI	CAYNNNNRTG	2 cut(s)	636, 783
SacII	CCGCGG	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	5 cut(s)	318, 387, 408, 424, 621
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	6 cut(s)	67, 172, 393, 496, 679, 748
SchI	GAGTC	7 cut(s)	107, 360, 548, 677, 698, 714, 734
ScrFI	CCNGG	5 cut(s)	134, 464, 677, 683, 770
SexAI	ACCWGGT	1 cut(s)	768
SfaNI	GCATC	3 cut(s)	426, 747, 799
SfcI	CTRYAG	1 cut(s)	280
Sfr274I	CTCGAG	2 cut(s)	536, 658
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	172, 748
SlaI	CTCGAG	2 cut(s)	536, 658
SmiMI	CAYNNNNRTG	2 cut(s)	636, 783
SmlI	CTYRAG	2 cut(s)	536, 658
SmoI	CTYRAG	2 cut(s)	536, 658
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	8 cut(s)	60, 130, 317, 335, 408, 421, 423, 523
StyD4I	CCNGG	5 cut(s)	132, 462, 675, 681, 768
StyI	CCWWGG	2 cut(s)	103, 302
TaaI	ACNGT	1 cut(s)	782
TaqI	TCGA	5 cut(s)	203, 537, 542, 659, 701
TasI	AATT	1 cut(s)	210
TauI	GCSGC	3 cut(s)	320, 410, 426
TfiI	GAWTC	2 cut(s)	325, 726
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	204, 699, 750
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	386, 620
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	417, 573
TspRI	CASTG	3 cut(s)	204, 699, 750
VpaK11BI	GGWCC	2 cut(s)	172, 748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XhoI	CTCGAG	2 cut(s)	536, 658
XmiI	GTMKAC	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.