Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010144

Physical Location & Seq

Genomic Coordinates Forward (+)

5705872 .. 5708330

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08580.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACGTACAGTCCGAAACGAGCCATGGCGGAGCTCAGGCACTCCATCTCGATGGGGGCTCGAGCCACTTCTTCTCCAATGAAGCGCGACGAGGACTCCTCCCCTCTCATCTCCGACACTGAGCCCCAAGACGACGACGACGGCCGCGGTCGCCCCCCCTTCAAGGATCGCGACCGTCCCCTCCTCTCCCATTTCCAATCCATCTGCCCCTCCCTTTCCGACGACCCCAACAGCTCCAGGATCTCACTCTTCATCGTCATCGCCGTCGCAATCTTCGGCCTGGTCTCGATTCTGGCGATCGTGAAACGAGTGAATGCTCCTTACTTGTGTAAAAAAGATGGCATTACTCTTCACTGCCCTCATGTCAAGGAATCACCTTCGCTATGGGAGAATCCGTATTCAGCAACCACATCTTGGAAGCCCTGTGCCGAGCGCCGCCTTGGTGGGATTTCAGATCTTCCACCCGAAAACGAAACAACTGGGTACATATTTATTCACGCTGAAGGTGGTCTAAATCAGCAAAGAATTGCGATATGCAATGCAGTAGCTGTGGCTAAAATAATGAATGCCACCCTTATTTTGCCTGTGCTGAAGCAGGACCAGATTTGGAAAGACCAAACGAAGTTTGAAGATATCTTTGATGTTGACCATTTCATTGATTACCTGAAGGATGATGTACGAATTGTTCGTGATATTCCTGAGTGGTTTACTGACAAAGCTGAGCTATTTACAAGTATAAGACGAACAGTAAAGAACATTCCAAAGTATGCACCTGCACAATTTTACATAGACAATGTTCTGCCACGAATTAAGGAAAAGAAGATAATGGCCCTAAAACCTTTTGTCGATCGATCTCGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

288

Amino Acids

32.56

Weight (kDa)

8.2

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26370 AT3G26370
fragaria_vesca	FvH4_4g25921
malus_domestica	MD13G1098200.v1.1 MD16G1099100.v1.1
prunus_persica	Prupe.1G247100_v2.0.a1
pyrus_communis	pycom13g08580 pycom13g08590 pycom16g08440 pycom16g08450
rosa_chinensis	RchiOBHm_Chr4g0433391
rosa_laevigata	RLG00000006757
rosa_multiflora	Rmu_sc0000759.1_g000007
rosa_roxburghii	Rroxscaffold_5G00374940
rosa_rugosa	Rorug04G0268400
rosa_samantha	Rh4AG323200 Rh4BG330800 Rh4BG330900 Rh4CG346200 Rh4DG327300
rosa_wichuraiana	Rw4G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	781
Acc36I	ACCTGC	1 cut(s)	781
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccII	CGCG	3 cut(s)	87, 147, 171
AciI	CCGC	4 cut(s)	29, 145, 147, 436
AclWI	GGATC	2 cut(s)	174, 248
AcoI	YGGCCR	1 cut(s)	142
AcuI	CTGAAG	3 cut(s)	522, 611, 686
AfaI	GTAC	3 cut(s)	8, 485, 678
AfiI	CCNNNNNNNGG	2 cut(s)	163, 414
AgsI	TTSAA	2 cut(s)	163, 629
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	236, 279
AluBI	AGCT	5 cut(s)	34, 234, 548, 719, 724
AluI	AGCT	5 cut(s)	34, 234, 548, 719, 724
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	2 cut(s)	174, 248
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	2 cut(s)	60, 855
AoxI	GGCC	3 cut(s)	142, 277, 828
AspLEI	GCGC	2 cut(s)	87, 435
AspS9I	GGNCC	2 cut(s)	598, 829
AsuHPI	GGTGA	1 cut(s)	366
AvaI	CYCGRG	2 cut(s)	60, 855
AvaII	GGWCC	1 cut(s)	598
BanII	GRGCYC	3 cut(s)	36, 61, 126
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	4 cut(s)	46, 53, 209, 332
BceAI	ACGGC	2 cut(s)	157, 248
BciT130I	CCWGG	2 cut(s)	238, 281
BcoDI	GTCTC	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	781
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	2 cut(s)	145, 436
BlpI	GCTNAGC	1 cut(s)	720
BlsI	GCNGC	2 cut(s)	146, 437
Bme1390I	CCNGG	2 cut(s)	238, 281
Bme18I	GGWCC	1 cut(s)	598
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmeT110I	CYCGRG	2 cut(s)	60, 855
BmgT120I	GGNCC	2 cut(s)	598, 829
BmrFI	CCNGG	2 cut(s)	238, 281
BmrI	ACTGGG	1 cut(s)	489
BmuI	ACTGGG	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu1102I	GCTNAGC	1 cut(s)	720
Bsa29I	ATCGAT	1 cut(s)	850
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	24, 145, 439
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 80, 88, 110, 380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 414
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	544
BseBI	CCWGG	2 cut(s)	238, 281
BseCI	ATCGAT	1 cut(s)	850
BseDI	CCNNGG	3 cut(s)	24, 145, 439
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	2 cut(s)	163, 414
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	4 cut(s)	49, 111, 690, 711
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	2 cut(s)	88, 173
BseX3I	CGGCCG	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	759
Bsh1236I	CGCG	3 cut(s)	87, 147, 171
Bsh1285I	CGRYCG	5 cut(s)	145, 151, 175, 300, 850
BshFI	GGCC	3 cut(s)	144, 279, 830
BshVI	ATCGAT	1 cut(s)	850
BsiEI	CGRYCG	5 cut(s)	145, 151, 175, 300, 850
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	2 cut(s)	60, 855
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	163, 414
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	2 cut(s)	319, 571
BsnI	GGCC	3 cut(s)	144, 279, 830
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	2 cut(s)	60, 855
Bsp1286I	GDGCHC	3 cut(s)	36, 61, 126
Bsp143I	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
Bsp1720I	GCTNAGC	1 cut(s)	720
Bsp19I	CCATGG	1 cut(s)	24
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	4 cut(s)	29, 145, 147, 436
BspANI	GGCC	3 cut(s)	144, 279, 830
BspCNI	CTCAG	4 cut(s)	48, 112, 691, 712
BspDI	ATCGAT	1 cut(s)	850
BspFNI	CGCG	3 cut(s)	87, 147, 171
BspMI	ACCTGC	1 cut(s)	781
BspPI	GGATC	2 cut(s)	174, 248
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	3 cut(s)	24, 145, 439
BssMI	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
BssT1I	CCWWGG	2 cut(s)	24, 439
Bst2UI	CCWGG	2 cut(s)	238, 281
Bst4CI	ACNGT	3 cut(s)	11, 176, 748
Bst6I	CTCTTC	2 cut(s)	254, 354
BstDEI	CTNAG	4 cut(s)	35, 120, 699, 720
BstDSI	CCRYGG	2 cut(s)	24, 145
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	3 cut(s)	87, 147, 171
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	2 cut(s)	87, 435
BstKTI	GATC	6 cut(s)	169, 243, 300, 457, 850, 854
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
BstMCI	CGRYCG	5 cut(s)	145, 151, 175, 300, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	2 cut(s)	238, 281
BstSCI	CCNGG	2 cut(s)	236, 279
BstUI	CGCG	3 cut(s)	87, 147, 171
BstX2I	RGATCY	2 cut(s)	240, 454
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	2 cut(s)	240, 454
BstZI	CGGCCG	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	850
BsuRI	GGCC	3 cut(s)	144, 279, 830
BsuTUI	ATCGAT	1 cut(s)	850
BtgI	CCRYGG	2 cut(s)	24, 145
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	117, 352
BtuMI	TCGCGA	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	781
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	2 cut(s)	87, 435
Cfr13I	GGNCC	2 cut(s)	598, 829
Cfr42I	CCGCGG	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	850
Csp6I	GTAC	3 cut(s)	7, 484, 677
CviAII	CATG	2 cut(s)	25, 362
CviQI	GTAC	3 cut(s)	7, 484, 677
DdeI	CTNAG	4 cut(s)	35, 120, 699, 720
DpnI	GATC	6 cut(s)	168, 242, 299, 456, 849, 853
DpnII	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
DriI	GACNNNNNGTC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	254, 354
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	2 cut(s)	254, 354
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	24, 439
Eco24I	GRGCYC	3 cut(s)	36, 61, 126
Eco31I	GGTCTC	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	598
Eco52I	CGGCCG	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	3 cut(s)	522, 611, 686
Eco88I	CYCGRG	2 cut(s)	60, 855
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	236, 279
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	24, 439
EcoT38I	GRGCYC	3 cut(s)	36, 61, 126
ErhI	CCWWGG	2 cut(s)	24, 439
FaeI	CATG	2 cut(s)	28, 365
FaiI	YATR	9 cut(s)	26, 363, 385, 488, 535, 737, 768, 788, 862
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	2 cut(s)	24, 361
Fnu4HI	GCNGC	2 cut(s)	145, 436
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	3 cut(s)	36, 61, 126
Fsp4HI	GCNGC	2 cut(s)	145, 436
GlaI	GCGC	2 cut(s)	86, 434
GluI	GCNGC	2 cut(s)	145, 436
GsuI	CTGGAG	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	3 cut(s)	144, 279, 830
HhaI	GCGC	2 cut(s)	87, 435
Hin1II	CATG	2 cut(s)	28, 365
Hin6I	GCGC	2 cut(s)	85, 433
HinP1I	GCGC	2 cut(s)	85, 433
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	4 cut(s)	95, 289, 371, 391
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	2 cut(s)	646, 708
Hpy188I	TCNGA	4 cut(s)	15, 115, 220, 454
Hpy188III	TCNNGA	6 cut(s)	49, 170, 286, 301, 689, 698
Hpy8I	GTNNAC	2 cut(s)	646, 708
Hpy99I	CGWCG	6 cut(s)	92, 137, 140, 143, 224, 269
HpyAV	CCTTC	4 cut(s)	169, 387, 497, 661
HpyCH4III	ACNGT	3 cut(s)	11, 176, 748
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	4 cut(s)	537, 542, 770, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	4 cut(s)	35, 120, 699, 720
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	28, 365
HspAI	GCGC	2 cut(s)	85, 433
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
LmnI	GCTCC	3 cut(s)	31, 239, 322
MaeII	ACGT	1 cut(s)	5
MalI	GATC	6 cut(s)	168, 242, 299, 456, 849, 853
MboI	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
MboII	GAAGA	7 cut(s)	63, 241, 265, 341, 449, 641, 832
MflI	RGATCY	2 cut(s)	240, 454
MhlI	GDGCHC	3 cut(s)	36, 61, 126
MluCI	AATT	4 cut(s)	525, 681, 779, 807
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	138, 243
MnlI	CCTC	7 cut(s)	85, 109, 114, 191, 194, 220, 369
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	238, 281
Mva1269I	GAATGC	2 cut(s)	319, 571
MvaI	CCWGG	2 cut(s)	238, 281
MvnI	CGCG	3 cut(s)	87, 147, 171
MwoI	GCNNNNNNNGC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
NlaIII	CATG	2 cut(s)	28, 365
NmeAIII	GCCGAG	1 cut(s)	454
NruI	TCGCGA	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	4 cut(s)	11, 261, 293, 685
PctI	GAATGC	2 cut(s)	319, 571
PfeI	GAWTC	3 cut(s)	289, 371, 391
PflMI	CCANNNNNTGG	1 cut(s)	414
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	146, 437
Ple19I	CGATCG	2 cut(s)	300, 850
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	236, 279
PspGI	CCWGG	2 cut(s)	236, 279
PspPI	GGNCC	2 cut(s)	598, 829
PspXI	VCTCGAGB	1 cut(s)	60
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	240, 454
PvuI	CGATCG	2 cut(s)	300, 850
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	3 cut(s)	8, 485, 678
RsaNI	GTAC	3 cut(s)	7, 484, 677
RseI	CAYNNNNRTG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	36
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	2 cut(s)	145, 436
Sau3AI	GATC	6 cut(s)	166, 240, 297, 454, 847, 851
Sau96I	GGNCC	2 cut(s)	598, 829
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	238, 281
SduI	GDGCHC	3 cut(s)	36, 61, 126
Sfr274I	CTCGAG	1 cut(s)	60
Sfr303I	CCGCGG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	598
SlaI	CTCGAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	4 cut(s)	525, 681, 779, 807
SsiI	CCGC	4 cut(s)	29, 145, 147, 436
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	236, 279
StyI	CCWWGG	2 cut(s)	24, 439
TaaI	ACNGT	3 cut(s)	11, 176, 748
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	50, 61, 287, 846, 850
TasI	AATT	4 cut(s)	525, 681, 779, 807
TauI	GCSGC	2 cut(s)	147, 438
TfiI	GAWTC	3 cut(s)	289, 371, 391
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	2 cut(s)	124, 359
TspDTI	ATGAA	4 cut(s)	95, 241, 578, 643
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	2 cut(s)	124, 359
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	598
XhoI	CTCGAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.