Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010144

Physical Location & Seq

Genomic Coordinates Forward (+)

5708410 .. 5709542

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTGATCTGTTGGCATCAAGGATGAGAAATCGCACTGGAGGTTCCAATCCTTATATGGCCCTTCATCTTAGGTTTGAGAAAGGAATGGTAGGCTTATCTTTCTGTGATTTTGTGGGCACAAGGGAAGAGAAAGCTCTAATGGCAGAATATAGATATAAAGAATGGCCGAGACGATACAAGAATGGTACCCATCTATGGCAACTAGCCCTGCAGAAGCGAAAGGAAGGGCGATGCCCCCTTGAGCCTGGGGAAGTAGCTGTCATTCTTCGAGCAATGGGCTATCCTAAGGAAACTCAAATTTATGTTGCTTCAGGACAGGTTTATGGTGGCCACAACAGGATGGCGCCCCTGAGGAACATGTTCCCAAATCTGGTAACGAAAGAAGAGTTGGCAGCCAAGCTGGAGTTGGATAAATTCAGGAAGCATGTGACTAGCTTGGCAGCGCTCGACTTCCTGGTGTGCTTGAAGTCTGATGTATTCGTGATGACCCACGGAGGAAACTTTGTTAAGCTGATCATAGGGGCACGCAGGTACATGGGTCATCGTCAAAAATCAATAAAACCAGACAAGGGGCTGATGTCCAAGTCTTTTGGGGACCCTTACATGGGCTGGGCCACCTTTGCAGACGATGTAGTAGTCACCCACGAAACACGAACTGGATTACCAGAAGCGACCTTCCCAAACTACGACTTGTGGGAGAACCCTCTAACTCCTTGCATGTGTAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

245

Amino Acids

27.8

Weight (kDa)

9.46

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26370 AT3G26370
fragaria_vesca	FvH4_4g25921
malus_domestica	MD13G1098200.v1.1 MD16G1099100.v1.1
prunus_persica	Prupe.1G247100_v2.0.a1
pyrus_communis	pycom13g08580 pycom13g08590 pycom16g08440 pycom16g08450
rosa_chinensis	RchiOBHm_Chr4g0433391
rosa_laevigata	RLG00000006757
rosa_multiflora	Rmu_sc0000759.1_g000007
rosa_roxburghii	Rroxscaffold_5G00374940
rosa_rugosa	Rorug04G0268400
rosa_samantha	Rh4AG323200 Rh4BG330800 Rh4BG330900 Rh4CG346200 Rh4DG327300
rosa_wichuraiana	Rw4G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	522
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	2 cut(s)	188, 346
AcoI	YGGCCR	2 cut(s)	167, 331
AcsI	RAATTY	2 cut(s)	300, 416
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	2 cut(s)	190, 536
AfeI	AGCGCT	1 cut(s)	447
AfiI	CCNNNNNNNGG	5 cut(s)	198, 373, 572, 607, 608
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	469
AjnI	CCWGG	2 cut(s)	247, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	137, 260, 403, 438, 514, 731
AluI	AGCT	6 cut(s)	137, 260, 403, 438, 514, 731
Alw26I	GTCTC	1 cut(s)	166
Aor51HI	AGCGCT	1 cut(s)	447
AoxI	GGCC	4 cut(s)	60, 167, 331, 615
ApeKI	GCWGC	2 cut(s)	395, 443
ApoI	RAATTY	2 cut(s)	300, 416
Asp700I	GAANNNNTTC	1 cut(s)	362
Asp718I	GGTACC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	349, 448
AspS9I	GGNCC	3 cut(s)	61, 598, 615
AsuHPI	GGTGA	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	598
AxyI	CCTNAGG	2 cut(s)	288, 353
BaeGI	GKGCMC	2 cut(s)	122, 529
BaeI	ACNNNNGTAYC	2 cut(s)	526, 559
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	2 cut(s)	188, 346
BbvI	GCAGC	2 cut(s)	407, 455
BccI	CCATC	2 cut(s)	201, 337
BciT130I	CCWGG	2 cut(s)	249, 458
BclI	TGATCA	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	206, 435
BfmI	CTRYAG	1 cut(s)	212
BfoI	RGCGCY	2 cut(s)	350, 449
BfuAI	ACCTGC	1 cut(s)	522
BisI	GCNGC	2 cut(s)	396, 444
BlsI	GCNGC	2 cut(s)	397, 445
Bme1390I	CCNGG	2 cut(s)	249, 458
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	61, 598, 615
BmiI	GGNNCC	5 cut(s)	46, 190, 348, 599, 600
BmrFI	CCNGG	2 cut(s)	249, 458
BmsI	GCATC	2 cut(s)	26, 224
BpmI	CTGGAG	2 cut(s)	60, 425
BpuEI	CTTGAG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	248, 493
Bsc4I	CCNNNNNNNGG	5 cut(s)	198, 373, 572, 607, 608
Bse1I	ACTGG	2 cut(s)	43, 664
Bse21I	CCTNAGG	2 cut(s)	288, 353
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	249, 458
BseDI	CCNNGG	2 cut(s)	248, 493
BseGI	GGATG	2 cut(s)	30, 348
BseLI	CCNNNNNNNGG	5 cut(s)	198, 373, 572, 607, 608
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	43, 664
BseSI	GKGCMC	2 cut(s)	122, 529
BseXI	GCAGC	2 cut(s)	407, 455
BseYI	CCCAGC	1 cut(s)	612
BshFI	GGCC	4 cut(s)	62, 169, 333, 617
BshNI	GGYRCC	2 cut(s)	188, 346
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	5 cut(s)	198, 373, 572, 607, 608
BsmAI	GTCTC	1 cut(s)	166
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	4 cut(s)	62, 169, 333, 617
Bsp1286I	GDGCHC	2 cut(s)	122, 529
Bsp143I	GATC	2 cut(s)	7, 516
BspANI	GGCC	4 cut(s)	62, 169, 333, 617
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	5 cut(s)	46, 190, 348, 599, 600
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	522
BspT107I	GGYRCC	2 cut(s)	188, 346
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	43, 664
BssECI	CCNNGG	2 cut(s)	248, 493
BssMI	GATC	2 cut(s)	7, 516
BssNI	GRCGYC	1 cut(s)	347
Bst2UI	CCWGG	2 cut(s)	249, 458
Bst6I	CTCTTC	2 cut(s)	123, 381
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	3 cut(s)	71, 288, 353
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	30, 348
BstH2I	RGCGCY	2 cut(s)	350, 449
BstHHI	GCGC	2 cut(s)	349, 448
BstKTI	GATC	2 cut(s)	10, 519
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	7, 516
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 623
BstNI	CCWGG	2 cut(s)	249, 458
BstNSI	RCATGY	3 cut(s)	364, 431, 724
BstSCI	CCNGG	2 cut(s)	247, 456
BstSFI	CTRYAG	1 cut(s)	212
BstSLI	GKGCMC	2 cut(s)	122, 529
BstV1I	GCAGC	2 cut(s)	407, 455
Bsu36I	CCTNAGG	2 cut(s)	288, 353
BsuRI	GGCC	4 cut(s)	62, 169, 333, 617
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	30, 348
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	529
CfoI	GCGC	2 cut(s)	349, 448
Cfr13I	GGNCC	3 cut(s)	61, 598, 615
Csp6I	GTAC	2 cut(s)	189, 535
CviAII	CATG	5 cut(s)	361, 428, 538, 607, 721
CviQI	GTAC	2 cut(s)	189, 535
DdeI	CTNAG	3 cut(s)	71, 288, 353
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	2 cut(s)	9, 518
DpnII	GATC	2 cut(s)	7, 516
EaeI	YGGCCR	2 cut(s)	167, 331
Eam1104I	CTCTTC	2 cut(s)	123, 381
EarI	CTCTTC	2 cut(s)	123, 381
Eco47I	GGWCC	1 cut(s)	598
Eco47III	AGCGCT	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	2 cut(s)	288, 353
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	247, 456
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	5 cut(s)	364, 431, 541, 610, 724
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	5 cut(s)	360, 427, 537, 606, 720
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	396, 444
FokI	GGATG	2 cut(s)	37, 355
Fsp4HI	GCNGC	2 cut(s)	396, 444
FspBI	CTAG	2 cut(s)	206, 435
GlaI	GCGC	2 cut(s)	348, 447
GluI	GCNGC	2 cut(s)	396, 444
GsaI	CCCAGC	1 cut(s)	616
GsuI	CTGGAG	2 cut(s)	60, 425
HaeII	RGCGCY	2 cut(s)	350, 449
HaeIII	GGCC	4 cut(s)	62, 169, 333, 617
HhaI	GCGC	2 cut(s)	349, 448
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	5 cut(s)	364, 431, 541, 610, 724
Hin6I	GCGC	2 cut(s)	347, 446
HinP1I	GCGC	2 cut(s)	347, 446
HindIII	AAGCTT	1 cut(s)	729
HphI	GGTGA	1 cut(s)	634
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	3 cut(s)	315, 421, 484
HpyAV	CCTTC	3 cut(s)	74, 221, 688
HpyCH4V	TGCA	3 cut(s)	214, 626, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 623
HpyF3I	CTNAG	3 cut(s)	71, 288, 353
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	364, 431, 541, 610, 724
HspAI	GCGC	2 cut(s)	347, 446
KasI	GGCGCC	1 cut(s)	346
KflI	GGGWCCC	1 cut(s)	598
KpnI	GGTACC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	7, 516
Lsp1109I	GCAGC	2 cut(s)	407, 455
LweI	GCATC	2 cut(s)	26, 224
MaeI	CTAG	2 cut(s)	206, 435
MaeIII	GTNAC	3 cut(s)	376, 430, 640
MalI	GATC	2 cut(s)	9, 518
MboI	GATC	2 cut(s)	7, 516
MboII	GAAGA	3 cut(s)	140, 260, 398
MhlI	GDGCHC	2 cut(s)	122, 529
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	2 cut(s)	300, 416
MluNI	TGGCCA	1 cut(s)	333
Mly113I	GGCGCC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	4 cut(s)	35, 348, 491, 717
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	249, 458
MvaI	CCWGG	2 cut(s)	249, 458
MwoI	GCNNNNNNNGC	2 cut(s)	143, 623
NarI	GGCGCC	1 cut(s)	347
NdeII	GATC	2 cut(s)	7, 516
NlaIII	CATG	5 cut(s)	364, 431, 541, 610, 724
NlaIV	GGNNCC	5 cut(s)	46, 190, 348, 599, 600
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	430, 640
NspI	RCATGY	3 cut(s)	364, 431, 724
PciI	ACATGT	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	397, 445
PluTI	GGCGCC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	598
PscI	ACATGT	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	247, 456
PspFI	CCCAGC	1 cut(s)	612
PspGI	CCWGG	2 cut(s)	247, 456
PspN4I	GGNNCC	5 cut(s)	46, 190, 348, 599, 600
PspPI	GGNCC	3 cut(s)	61, 598, 615
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	190, 536
RsaNI	GTAC	2 cut(s)	189, 535
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	2 cut(s)	396, 444
Sau3AI	GATC	2 cut(s)	7, 516
Sau96I	GGNCC	3 cut(s)	61, 598, 615
ScrFI	CCNGG	2 cut(s)	249, 458
SduI	GDGCHC	2 cut(s)	122, 529
SfaNI	GCATC	2 cut(s)	26, 224
SfcI	CTRYAG	1 cut(s)	212
SfoI	GGCGCC	1 cut(s)	348
SinI	GGWCC	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	300, 416
SspDI	GGCGCC	1 cut(s)	346
SspMI	CTAG	2 cut(s)	206, 435
StyD4I	CCNGG	2 cut(s)	247, 456
TaqI	TCGA	2 cut(s)	271, 450
TasI	AATT	2 cut(s)	300, 416
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	2 cut(s)	430, 640
TseI	GCWGC	2 cut(s)	395, 443
Tsp45I	GTSAC	2 cut(s)	430, 640
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	2 cut(s)	300, 416
XceI	RCATGY	3 cut(s)	364, 431, 724
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 406
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	2 cut(s)	206, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.