Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010144

Physical Location & Seq

Genomic Coordinates Forward (+)

49597484 .. 49598315

Gene Structure 832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG330900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCAGAATGGTACCCATCTCTGGCAATTAGCCCTGCAGAAGCGGAAGGAAGGGAGATGCCCCCTTGAGCCTGGGGAAGTAGCTGTGATTCTACGAGCAATGGGGTATCCCAAAGAAACTCAAATTTACGTTGCTTCAGGACAGGTCTATGGTGGCCACAACAGAATGGCACCACTCAGGAACATGTTTCCAAATCTGGTAACCAAGGAGGAGTTGGCAACTAAGCAAGAGTTGGATCACTTCAGGAAGCATGTGACTAGCTTGGCCGCACTTGATTTCCTGGTGTGCTTGAAGTCTGATGTATTTGTAATGACCCATGGAGGCAACTTTGCCAAGCTGATCATCGGGGCACGCAGGTACATGGGTCACCGTCTCAAATCCATAAAACCAGACAAGGGGCTGATGTCTAAATCCTTTGGAGACCCTTACATGGGGTGGGCAACCTTTGCCGAGGAGGTGGTTATCACCCATGAAACACGGACCGGATTACCAGAAGCGACCTTTCCTAACTATGACTTGTGGGAGAATCCTCTAACTCCTTGCATGTGCAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

185

Amino Acids

20.9

Weight (kDa)

9.05

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	11 - 121	2.6e-34	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26370 AT3G26370
fragaria_vesca	FvH4_4g25921
malus_domestica	MD13G1098200.v1.1 MD16G1099100.v1.1
prunus_persica	Prupe.1G247100_v2.0.a1
pyrus_communis	pycom13g08580 pycom13g08590 pycom16g08440 pycom16g08450
rosa_chinensis	RchiOBHm_Chr4g0433391
rosa_laevigata	RLG00000006757
rosa_multiflora	Rmu_sc0000759.1_g000007
rosa_roxburghii	Rroxscaffold_5G00374940
rosa_rugosa	Rorug04G0268400
rosa_samantha	Rh4AG323200 Rh4BG330800 Rh4BG330900 Rh4CG346200 Rh4DG327300
rosa_wichuraiana	Rw4G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	11, 169
AciI	CCGC	2 cut(s)	43, 267
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	2 cut(s)	154, 264
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	2 cut(s)	120, 226
AfaI	GTAC	2 cut(s)	13, 359
AfiI	CCNNNNNNNGG	4 cut(s)	21, 395, 430, 431
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	70, 279
AluBI	AGCT	4 cut(s)	83, 261, 337, 554
AluI	AGCT	4 cut(s)	83, 261, 337, 554
Alw26I	GTCTC	2 cut(s)	377, 414
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	2 cut(s)	154, 264
ApoI	RAATTY	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	2 cut(s)	359, 457
AvaII	GGWCC	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	352
BaeI	ACNNNNGTAYC	2 cut(s)	349, 382
BalI	TGGCCA	1 cut(s)	156
BanI	GGYRCC	2 cut(s)	11, 169
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	72, 281
BciVI	GTATCC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	377, 414
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	72, 281
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	13, 171
BmrFI	CCNGG	2 cut(s)	72, 281
BmsI	GCATC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	4 cut(s)	71, 204, 316, 450
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 395, 430, 431
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	72, 281
BseDI	CCNNGG	4 cut(s)	71, 204, 316, 450
BseLI	CCNNNNNNNGG	4 cut(s)	21, 395, 430, 431
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	224, 467
BseSI	GKGCMC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	156, 266
BshNI	GGYRCC	2 cut(s)	11, 169
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	4 cut(s)	21, 395, 430, 431
BsmAI	GTCTC	2 cut(s)	377, 414
BsmBI	CGTCTC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	156, 266
Bso31I	GGTCTC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	235, 339
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	2 cut(s)	43, 267
BspANI	GGCC	2 cut(s)	156, 266
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	13, 171
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	243
BspT107I	GGYRCC	2 cut(s)	11, 169
BspTNI	GGTCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	105
BssECI	CCNNGG	4 cut(s)	71, 204, 316, 450
BssMI	GATC	2 cut(s)	235, 339
BssT1I	CCWWGG	2 cut(s)	204, 316
Bst2UI	CCWGG	2 cut(s)	72, 281
Bst4CI	ACNGT	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	176, 222, 555
BstDSI	CCRYGG	1 cut(s)	316
BstEII	GGTNACC	2 cut(s)	199, 365
BstKTI	GATC	2 cut(s)	238, 342
BstMAI	GTCTC	2 cut(s)	377, 414
BstMBI	GATC	2 cut(s)	235, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	72, 281
BstNSI	RCATGY	3 cut(s)	187, 254, 547
BstPI	GGTNACC	2 cut(s)	199, 365
BstSCI	CCNGG	2 cut(s)	70, 279
BstSFI	CTRYAG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	156, 266
BtgI	CCRYGG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	480
CpoI	CGGWCCG	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	12, 358
CspI	CGGWCCG	1 cut(s)	480
CviAII	CATG	7 cut(s)	184, 251, 317, 361, 430, 470, 544
CviJI	RGCY	9 cut(s)	32, 70, 83, 156, 261, 266, 337, 400, 554
CviKI_1	RGCY	9 cut(s)	32, 70, 83, 156, 261, 266, 337, 400, 554
CviQI	GTAC	2 cut(s)	12, 358
DdeI	CTNAG	3 cut(s)	176, 222, 555
DpnI	GATC	2 cut(s)	237, 341
DpnII	GATC	2 cut(s)	235, 339
EaeI	YGGCCR	2 cut(s)	154, 264
Eco130I	CCWWGG	2 cut(s)	204, 316
Eco31I	GGTCTC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	480
Eco57I	CTGAAG	2 cut(s)	120, 226
Eco91I	GGTNACC	2 cut(s)	199, 365
EcoO65I	GGTNACC	2 cut(s)	199, 365
EcoRII	CCWGG	2 cut(s)	70, 279
EcoT14I	CCWWGG	2 cut(s)	204, 316
ErhI	CCWWGG	2 cut(s)	204, 316
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	7 cut(s)	187, 254, 320, 364, 433, 473, 547
FatI	CATG	7 cut(s)	183, 250, 316, 360, 429, 469, 543
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	156, 266
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	7 cut(s)	187, 254, 320, 364, 433, 473, 547
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	2 cut(s)	88, 526
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	359, 457
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	3 cut(s)	138, 178, 244
HpyAV	CCTTC	2 cut(s)	40, 44
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	4 cut(s)	4, 37, 543, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	176, 222, 555
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	7 cut(s)	187, 254, 320, 364, 433, 473, 547
KpnI	GGTACC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	235, 339
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	199, 253, 365
MalI	GATC	2 cut(s)	237, 341
MboI	GATC	2 cut(s)	235, 339
MhlI	GDGCHC	1 cut(s)	352
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	2 cut(s)	26, 123
MluNI	TGGCCA	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	5 cut(s)	202, 314, 445, 448, 540
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	156
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	2 cut(s)	72, 281
MvaI	CCWGG	2 cut(s)	72, 281
MwoI	GCNNNNNNNGC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	235, 339
NlaIII	CATG	7 cut(s)	187, 254, 320, 364, 433, 473, 547
NlaIV	GGNNCC	2 cut(s)	13, 171
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	253, 365
NspI	RCATGY	3 cut(s)	187, 254, 547
PciI	ACATGT	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	88, 526
PkrI	GCNGC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	70, 279
PspEI	GGTNACC	2 cut(s)	199, 365
PspGI	CCWGG	2 cut(s)	70, 279
PspN4I	GGNNCC	2 cut(s)	13, 171
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	39
RsaI	GTAC	2 cut(s)	13, 359
RsaNI	GTAC	2 cut(s)	12, 358
Rsr2I	CGGWCCG	1 cut(s)	480
RsrII	CGGWCCG	1 cut(s)	480
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	235, 339
Sau96I	GGNCC	1 cut(s)	480
ScrFI	CCNGG	2 cut(s)	72, 281
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	26, 123
SsiI	CCGC	2 cut(s)	43, 267
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	70, 279
StyI	CCWWGG	2 cut(s)	204, 316
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	132
TasI	AATT	2 cut(s)	26, 123
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	88, 526
TseFI	GTSAC	2 cut(s)	253, 365
Tsp45I	GTSAC	2 cut(s)	253, 365
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	480
XapI	RAATTY	1 cut(s)	123
XceI	RCATGY	3 cut(s)	187, 254, 547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.