Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010144

Physical Location & Seq

Genomic Coordinates Forward (+)

49594337 .. 49596848

Gene Structure 2512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGGAGCTCCGGCACTCCATCTCCCTTGGGCCGCGCGCCACTTCTTCGCCGATGAAGCGCGACGAAGACTCCTCGCCGTTGATTTCCGACGCGCCGCCTCACCAAGACGACGACGACGGTCGCGGTCGCCATCCCTACAAAGATCGCGACCGTCCGTTCTGGTCCCATCTTCAATCACTCTGTCCTTTCCTTGGCGACGACGCCAAGACCTCTAAGATCTCACTCTTCGCGCTCATCGTAGTCGCGCTCCTCGGATTCGTCTTCATTTTCGCAATCGTGAAGCGCGTGAATGCTCCTTACTTGTGTAAAAAGGATGGCATTACTCTTCACTGTCCTCATGTCAAGGAAGCGCCGTCGCTGTGGGAGAATCCTTATTCAGCAACCACATCTTGGAAGCCCTGCGCTGAGCGTCGCGCCGGTGGGATTTCAGATCTTCCACCTGAAAATGAAACAACTGGCTACATATTTATTCACGCAGAGGGTGGTCTAAATCAGCAAAGAATTGCTATATGCAATGCTGTAGGTGTGGCCAAAATCATGAATGCCACTCTTATTTTGCCAGTGTTGAAGCAAGACCAGATTTGGAAAGACCAAACGAAATTTGAAGATATCTTTGATGTTGATCATTTCATTGATTACCTGAAGGATGATGTACGAATTGTTCGTGACATTCCAGAGTGGTTTACTGACAGAACGGAGCTCTTCTCTAGCATAAGACGAACAGTTAAAAACATTCCAAAATATGCACCAGCGCAATTTTACATCGACAATGTTCTGCCTCGAATCAAGGAGAAGAAGATAATGGCCCTGAAGCCTTTTGTTGATCGACTCGGGTTAGTCACAAATTTTATACATGTGTGGCTGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

290

Amino Acids

33.05

Weight (kDa)

7.68

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	155 - 279	2.1e-35	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26370 AT3G26370
fragaria_vesca	FvH4_4g25921
malus_domestica	MD13G1098200.v1.1 MD16G1099100.v1.1
prunus_persica	Prupe.1G247100_v2.0.a1
pyrus_communis	pycom13g08580 pycom13g08590 pycom16g08440 pycom16g08450
rosa_chinensis	RchiOBHm_Chr4g0433391
rosa_laevigata	RLG00000006757
rosa_multiflora	Rmu_sc0000759.1_g000007
rosa_roxburghii	Rroxscaffold_5G00374940
rosa_rugosa	Rorug04G0268400
rosa_samantha	Rh4AG323200 Rh4BG330800 Rh4BG330900 Rh4CG346200 Rh4DG327300
rosa_wichuraiana	Rw4G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	393
AciI	CCGC	4 cut(s)	5, 35, 98, 126
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	2 cut(s)	602, 847
AcuI	CTGAAG	2 cut(s)	665, 833
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	2 cut(s)	194, 393
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	3 cut(s)	176, 571, 608
AluBI	AGCT	2 cut(s)	10, 703
AluI	AGCT	2 cut(s)	10, 703
Alw21I	GWGCWC	2 cut(s)	12, 705
Ama87I	CYCGRG	1 cut(s)	833
AoxI	GGCC	3 cut(s)	32, 531, 807
ApeKI	GCWGC	1 cut(s)	865
ApoI	RAATTY	2 cut(s)	602, 847
AspS9I	GGNCC	3 cut(s)	32, 165, 808
AsuHPI	GGTGA	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	833
AvaII	GGWCC	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	533
BanII	GRGCYC	2 cut(s)	12, 705
BbsI	GAAGAC	2 cut(s)	75, 256
Bbv12I	GWGCWC	2 cut(s)	12, 705
BbvI	GCAGC	1 cut(s)	852
BccI	CCATC	4 cut(s)	29, 141, 177, 311
BceAI	ACGGC	2 cut(s)	64, 340
BclI	TGATCA	1 cut(s)	625
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	356
BglII	AGATCT	2 cut(s)	219, 433
BisI	GCNGC	3 cut(s)	35, 98, 866
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	3 cut(s)	36, 99, 867
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	833
BmgT120I	GGNCC	3 cut(s)	32, 165, 808
BmiI	GGNNCC	1 cut(s)	167
BoxI	GACNNNNGTC	1 cut(s)	120
BpiI	GAAGAC	2 cut(s)	75, 256
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	28, 193, 253
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 393
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	463, 563
Bse3DI	GCAATG	1 cut(s)	523
Bse8I	GATNNNNATC	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	28, 193, 253
BseGI	GGATG	3 cut(s)	133, 322, 655
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	2 cut(s)	194, 393
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	463, 563
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	64, 242
BseXI	GCAGC	1 cut(s)	852
Bsh1285I	CGRYCG	3 cut(s)	124, 130, 154
BshFI	GGCC	3 cut(s)	34, 533, 809
BsiEI	CGRYCG	3 cut(s)	124, 130, 154
BsiHKAI	GWGCWC	2 cut(s)	12, 705
BsiHKCI	CYCGRG	1 cut(s)	833
BsiSI	CCGG	2 cut(s)	13, 420
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	194, 393
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	2 cut(s)	298, 550
BsnI	GGCC	3 cut(s)	34, 533, 809
BsoBI	CYCGRG	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	12, 705
Bsp143I	GATC	5 cut(s)	145, 219, 433, 625, 826
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	4 cut(s)	5, 35, 98, 126
BspANI	GGCC	3 cut(s)	34, 533, 809
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	463, 563
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	28, 193, 253
BssHII	GCGCGC	1 cut(s)	37
BssMI	GATC	5 cut(s)	145, 219, 433, 625, 826
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	28, 193
Bst4CI	ACNGT	4 cut(s)	122, 155, 335, 727
Bst6I	CTCTTC	3 cut(s)	233, 333, 710
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	216, 408
BstF5I	GGATG	3 cut(s)	133, 322, 655
BstH2I	RGCGCY	1 cut(s)	356
BstKTI	GATC	5 cut(s)	148, 222, 436, 628, 829
BstMBI	GATC	5 cut(s)	145, 219, 433, 625, 826
BstMCI	CGRYCG	3 cut(s)	124, 130, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	860
BstPAI	GACNNNNGTC	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	852
BstV2I	GAAGAC	2 cut(s)	75, 256
BstX2I	RGATCY	2 cut(s)	219, 433
BstYI	RGATCY	2 cut(s)	219, 433
BsuRI	GGCC	3 cut(s)	34, 533, 809
BtsCI	GGATG	3 cut(s)	133, 322, 655
BtsIMutI	CAGTG	2 cut(s)	331, 570
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	540
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	32, 165, 808
CseI	GACGC	3 cut(s)	101, 212, 401
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	3 cut(s)	341, 541, 857
CviJI	RGCY	9 cut(s)	10, 34, 400, 462, 533, 703, 809, 817, 865
CviKI_1	RGCY	9 cut(s)	10, 34, 400, 462, 533, 703, 809, 817, 865
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	2 cut(s)	216, 408
DpnI	GATC	5 cut(s)	147, 221, 435, 627, 828
DpnII	GATC	5 cut(s)	145, 219, 433, 625, 826
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	3 cut(s)	233, 333, 710
EarI	CTCTTC	3 cut(s)	233, 333, 710
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	10, 703
Eco130I	CCWWGG	2 cut(s)	28, 193
Eco24I	GRGCYC	2 cut(s)	12, 705
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	2 cut(s)	10, 703
Eco57I	CTGAAG	2 cut(s)	665, 833
Eco88I	CYCGRG	1 cut(s)	833
EcoICRI	GAGCTC	2 cut(s)	10, 703
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	28, 193
EcoT38I	GRGCYC	2 cut(s)	12, 705
ErhI	CCWWGG	2 cut(s)	28, 193
FaeI	CATG	3 cut(s)	344, 544, 860
FaiI	YATR	9 cut(s)	342, 467, 512, 514, 542, 716, 747, 854, 858
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	3 cut(s)	340, 540, 856
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	3 cut(s)	35, 98, 866
FokI	GGATG	3 cut(s)	120, 329, 662
FriOI	GRGCYC	2 cut(s)	12, 705
Fsp4HI	GCNGC	3 cut(s)	35, 98, 866
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	3 cut(s)	35, 98, 866
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	34, 533, 809
HapII	CCGG	2 cut(s)	13, 420
HgaI	GACGC	3 cut(s)	101, 212, 401
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	344, 544, 860
HinfI	GANTC	5 cut(s)	71, 258, 370, 786, 831
HpaII	CCGG	2 cut(s)	13, 420
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	687
Hpy188I	TCNGA	3 cut(s)	91, 257, 433
Hpy188III	TCNNGA	5 cut(s)	149, 280, 541, 668, 677
Hpy8I	GTNNAC	1 cut(s)	687
Hpy99I	CGWCG	9 cut(s)	68, 95, 116, 119, 122, 203, 206, 361, 417
HpyAV	CCTTC	1 cut(s)	640
HpyCH4III	ACNGT	4 cut(s)	122, 155, 335, 727
HpyCH4V	TGCA	2 cut(s)	516, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	216, 408
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	344, 544, 860
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	5 cut(s)	145, 219, 433, 625, 826
LguI	GCTCTTC	1 cut(s)	710
LmnI	GCTCC	5 cut(s)	7, 15, 255, 301, 700
Lsp1109I	GCAGC	1 cut(s)	852
MaeI	CTAG	1 cut(s)	711
MaeIII	GTNAC	2 cut(s)	668, 841
MalI	GATC	5 cut(s)	147, 221, 435, 627, 828
MboI	GATC	5 cut(s)	145, 219, 433, 625, 826
MflI	RGATCY	2 cut(s)	219, 433
MhlI	GDGCHC	2 cut(s)	12, 705
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	5 cut(s)	504, 602, 660, 758, 847
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	65, 825
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	85, 111, 223, 263, 348, 475, 792
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	1 cut(s)	729
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	2 cut(s)	13, 420
Mva1269I	GAATGC	2 cut(s)	298, 550
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	5 cut(s)	145, 219, 433, 625, 826
NlaIII	CATG	3 cut(s)	344, 544, 860
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	2 cut(s)	668, 841
NruI	TCGCGA	1 cut(s)	150
NspI	RCATGY	1 cut(s)	860
PagI	TCATGA	1 cut(s)	540
PauI	GCGCGC	1 cut(s)	37
PciI	ACATGT	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	3 cut(s)	237, 285, 664
PctI	GAATGC	2 cut(s)	298, 550
PfeI	GAWTC	3 cut(s)	258, 370, 786
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	36, 99, 867
PleI	GAGTC	2 cut(s)	65, 825
PpsI	GAGTC	2 cut(s)	65, 825
PscI	ACATGT	1 cut(s)	856
PshAI	GACNNNNGTC	1 cut(s)	120
Psp124BI	GAGCTC	2 cut(s)	12, 705
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	3 cut(s)	32, 165, 808
PsrI	GAACNNNNNNTAC	2 cut(s)	648, 680
PsuI	RGATCY	2 cut(s)	219, 433
PteI	GCGCGC	1 cut(s)	37
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
SacI	GAGCTC	2 cut(s)	12, 705
SapI	GCTCTTC	1 cut(s)	710
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	3 cut(s)	35, 98, 866
Sau3AI	GATC	5 cut(s)	145, 219, 433, 625, 826
Sau96I	GGNCC	3 cut(s)	32, 165, 808
SchI	GAGTC	2 cut(s)	65, 825
SduI	GDGCHC	2 cut(s)	12, 705
SetI	ASST	6 cut(s)	12, 215, 445, 529, 645, 705
SfcI	CTRYAG	1 cut(s)	522
SgrAI	CRCCGGYG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	165
Sse9I	AATT	5 cut(s)	504, 602, 660, 758, 847
SsiI	CCGC	4 cut(s)	5, 35, 98, 126
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	2 cut(s)	12, 705
StyI	CCWWGG	2 cut(s)	28, 193
TaaI	ACNGT	4 cut(s)	122, 155, 335, 727
TaqI	TCGA	3 cut(s)	768, 784, 829
TasI	AATT	5 cut(s)	504, 602, 660, 758, 847
TauI	GCSGC	2 cut(s)	37, 100
TfiI	GAWTC	3 cut(s)	258, 370, 786
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	2 cut(s)	338, 570
TseFI	GTSAC	2 cut(s)	668, 841
TseI	GCWGC	1 cut(s)	865
Tsp45I	GTSAC	2 cut(s)	668, 841
TspDTI	ATGAA	5 cut(s)	71, 256, 465, 557, 622
TspGWI	ACGGA	2 cut(s)	147, 713
TspRI	CASTG	2 cut(s)	338, 570
Van91I	CCANNNNNTGG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	2 cut(s)	602, 847
XceI	RCATGY	1 cut(s)	860
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.