Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010144

Physical Location & Seq

Genomic Coordinates Reverse (-)

44113067 .. 44115369

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCGGAGAAGGTCACTCTCTGTTACCAGGCGCTGGAGATTTCTTGGGTCCACAGATTACTCGACTTGGCGGACATTTGGGCCCTCGGCTGCATCTTCGGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGGGGTGGATGATACACAGAAGAAGATGCTAAATGTTATTGCCTATTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGGTAATGCTAGCCTTCTTTTCGTCGGGCATGAATTTGTTGTCAGGTCTTGGTGCAAAGATTGAGAGAGAGTCCAAGCTGAAGCTCAATGACTTTGACAAGTCTTGGTGCAAAGATTGTCAGGTCATTCAATATTGTGGACTTGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

125

Amino Acids

14.3

Weight (kDa)

7.53

Isoelectric Point (pI)

16.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	53 - 107	5.3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26370 AT3G26370
fragaria_vesca	FvH4_4g25921
malus_domestica	MD13G1098200.v1.1 MD16G1099100.v1.1
prunus_persica	Prupe.1G247100_v2.0.a1
pyrus_communis	pycom13g08580 pycom13g08590 pycom16g08440 pycom16g08450
rosa_chinensis	RchiOBHm_Chr4g0433391
rosa_laevigata	RLG00000006757
rosa_multiflora	Rmu_sc0000759.1_g000007
rosa_roxburghii	Rroxscaffold_5G00374940
rosa_rugosa	Rorug04G0268400
rosa_samantha	Rh4AG323200 Rh4BG330800 Rh4BG330900 Rh4CG346200 Rh4DG327300
rosa_wichuraiana	Rw4G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AciI	CCGC	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	131, 259
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	197, 356
AjnI	CCWGG	2 cut(s)	27, 139
AluBI	AGCT	2 cut(s)	304, 310
AluI	AGCT	2 cut(s)	304, 310
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	81
ApaI	GGGCCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	131, 259
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	3 cut(s)	49, 81, 82
AsuNHI	GCTAGC	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	29, 141
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	29, 141
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	49, 81, 82
BmiI	GGNNCC	2 cut(s)	50, 83
BmrFI	CCNGG	2 cut(s)	29, 141
BmsI	GCATC	3 cut(s)	102, 156, 217
BmtI	GCTAGC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	85, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	29, 141
BseDI	CCNNGG	2 cut(s)	85, 140
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	1 cut(s)	83
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	50, 83
BspOI	GCTAGC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	85, 140
BssMI	GATC	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	29, 141
BstC8I	GCNNGC	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstNI	CCWGG	2 cut(s)	29, 141
BstSCI	CCNGG	2 cut(s)	27, 139
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	49, 81, 82
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	6 cut(s)	83, 90, 223, 239, 304, 310
CviKI_1	RGCY	6 cut(s)	83, 90, 223, 239, 304, 310
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	27, 139
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	1 cut(s)	259
FaiI	YATR	1 cut(s)	257
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	2 cut(s)	52, 365
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	52, 365
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	4, 103, 250
HpyCH4V	TGCA	4 cut(s)	93, 208, 281, 336
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	3 cut(s)	102, 156, 217
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	13, 23
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	4 cut(s)	88, 172, 175, 185
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	2 cut(s)	131, 259
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	2 cut(s)	95, 220
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	29, 141
MvaI	CCWGG	2 cut(s)	29, 141
NdeII	GATC	1 cut(s)	214
NheI	GCTAGC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	50, 83
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	27, 139
PspGI	CCWGG	2 cut(s)	27, 139
PspN4I	GGNNCC	2 cut(s)	50, 83
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	49, 81, 82
PstNI	CAGNNNCTG	1 cut(s)	34
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	49, 81, 82
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	29, 141
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	8 cut(s)	15, 114, 202, 231, 274, 306, 312, 351
SfaNI	GCATC	3 cut(s)	102, 156, 217
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	131, 259
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	27, 139
TaqI	TCGA	1 cut(s)	63
TasI	AATT	2 cut(s)	131, 259
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	131, 259
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.