Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010144

Physical Location & Seq

Genomic Coordinates Forward (+)

5604546 .. 5607007

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGACTTACAGTCCGAAGCGTGCCATGGCGGAGCTCAGGCACTCCATCGCGGTGGGGGCTCGAGCCACTTCTTCTCCAATGAAGCGCGACGAGGACTCCTCCCCTCTGATCTTCGACACTCAGCCCCAAGACGACGACGACGGCCGCGGTCGCCCTCCCCACAAAGATCGCGACCGTCCCTTCCTCTCCCATTTCCAATCCATCTGCCCCTCAATTGCCGACGACTCCAACAGCTCCAGGATCTCACTCTTCATCGTCATCGTCGTCGTCGCAGTCTTCGGCCTGGTCTCGATTCTGGCGATCGTGAAACGAGTGAATACTCCTTACTTGTGTAAAAAAGATGGCATTACTCTTCACTGTCCTCTTGTCAAGGAGTCGCCTTCGCTTTGGGAGAATCCGTATTCAGCAACCACGTCTTGGAAGCCCTGTGCCGAGCGCCGCCTTGGTGGGATTTCAGATCTTCCACCTGAAAACGAAACAACTGGGTACATATTTATTCATGCTGAGGGTGGCCTAAATCAGCAAAGAATTGCGATATGCAATGCCGTAGCTGTAGCCAAAATAATGAATGCCACCCTTATTTTGCCTGTGCTGAAGCAGGACCAGATTTGGAAAGACCAAACGAAATTTGAAGATATCTTTGATGTTGACCATTTCATTGATTACCTGAAGGATGATGTACGAATTGTTCGTGATATTCCTGAGTGGTTTACTGACAAAGCTGAGCTATTTACAAGTATAAGACGAACAGTAAAGAACATTCCAAAATATGCACCTGCTCAATTTTACATAGACAATGTTCTGCCGCGAATCAAGGAGAAGAAGATAATGGCCCTAAAACCTTTTGTCGATCGATCGGGTACGACAATGTCCCTCAAGAAATCAACAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

298

Amino Acids

33.52

Weight (kDa)

8.69

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26370 AT3G26370
fragaria_vesca	FvH4_4g25921
malus_domestica	MD13G1098200.v1.1 MD16G1099100.v1.1
prunus_persica	Prupe.1G247100_v2.0.a1
pyrus_communis	pycom13g08580 pycom13g08590 pycom16g08440 pycom16g08450
rosa_chinensis	RchiOBHm_Chr4g0433391
rosa_laevigata	RLG00000006757
rosa_multiflora	Rmu_sc0000759.1_g000007
rosa_roxburghii	Rroxscaffold_5G00374940
rosa_rugosa	Rorug04G0268400
rosa_samantha	Rh4AG323200 Rh4BG330800 Rh4BG330900 Rh4CG346200 Rh4DG327300
rosa_wichuraiana	Rw4G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	784
Acc36I	ACCTGC	1 cut(s)	784
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccII	CGCG	5 cut(s)	50, 87, 147, 171, 808
AciI	CCGC	6 cut(s)	29, 50, 145, 147, 439, 806
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	2 cut(s)	614, 689
AfaI	GTAC	3 cut(s)	488, 681, 862
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	632
AhdI	GACNNNNNGTC	1 cut(s)	9
AjiI	CACGTC	1 cut(s)	414
AjnI	CCWGG	2 cut(s)	236, 282
AluBI	AGCT	5 cut(s)	34, 234, 551, 722, 727
AluI	AGCT	5 cut(s)	34, 234, 551, 722, 727
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	4 cut(s)	142, 280, 511, 831
ApoI	RAATTY	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	87, 438
AspS9I	GGNCC	2 cut(s)	601, 832
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	601
BanII	GRGCYC	2 cut(s)	36, 61
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	504
BccI	CCATC	3 cut(s)	53, 209, 335
BceAI	ACGGC	2 cut(s)	157, 530
BciT130I	CCWGG	2 cut(s)	238, 284
BcoDI	GTCTC	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	784
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	3 cut(s)	145, 439, 806
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	3 cut(s)	146, 440, 807
Bme1390I	CCNGG	2 cut(s)	238, 284
Bme18I	GGWCC	1 cut(s)	601
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	601, 832
BmrFI	CCNGG	2 cut(s)	238, 284
BmrI	ACTGGG	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	268
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	2 cut(s)	35, 504
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	860
Bsa29I	ATCGAT	1 cut(s)	853
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	24, 145, 442
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 80, 88, 110, 383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	2 cut(s)	238, 284
BseCI	ATCGAT	1 cut(s)	853
BseDI	CCNNGG	3 cut(s)	24, 145, 442
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	5 cut(s)	49, 134, 495, 693, 714
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	88
BseX3I	CGGCCG	1 cut(s)	142
Bsh1236I	CGCG	5 cut(s)	50, 87, 147, 171, 808
Bsh1285I	CGRYCG	6 cut(s)	145, 151, 175, 303, 853, 857
BshFI	GGCC	4 cut(s)	144, 282, 513, 833
BshVI	ATCGAT	1 cut(s)	853
BsiEI	CGRYCG	6 cut(s)	145, 151, 175, 303, 853, 857
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	162, 856
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	162, 856
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	4 cut(s)	144, 282, 513, 833
Bso31I	GGTCTC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	36, 61
Bsp143I	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
Bsp1720I	GCTNAGC	1 cut(s)	723
Bsp19I	CCATGG	1 cut(s)	24
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	6 cut(s)	29, 50, 145, 147, 439, 806
BspANI	GGCC	4 cut(s)	144, 282, 513, 833
BspCNI	CTCAG	5 cut(s)	48, 133, 496, 694, 715
BspDI	ATCGAT	1 cut(s)	853
BspFNI	CGCG	5 cut(s)	50, 87, 147, 171, 808
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	3 cut(s)	24, 145, 442
BssMI	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
BssT1I	CCWWGG	2 cut(s)	24, 442
Bst2UI	CCWGG	2 cut(s)	238, 284
Bst4CI	ACNGT	4 cut(s)	11, 176, 359, 751
Bst6I	CTCTTC	2 cut(s)	254, 357
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	5 cut(s)	35, 120, 504, 702, 723
BstDSI	CCRYGG	2 cut(s)	24, 145
BstF5I	GGATG	1 cut(s)	679
BstFNI	CGCG	5 cut(s)	50, 87, 147, 171, 808
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	87, 438
BstKTI	GATC	7 cut(s)	111, 169, 243, 303, 460, 853, 857
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
BstMCI	CGRYCG	6 cut(s)	145, 151, 175, 303, 853, 857
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 150
BstNI	CCWGG	2 cut(s)	238, 284
BstSCI	CCNGG	2 cut(s)	236, 282
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	5 cut(s)	50, 87, 147, 171, 808
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	240, 457
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	2 cut(s)	240, 457
BstZI	CGGCCG	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	853
BsuRI	GGCC	4 cut(s)	144, 282, 513, 833
BsuTUI	ATCGAT	1 cut(s)	853
BtgI	CCRYGG	2 cut(s)	24, 145
BtgZI	GCGATG	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	355
BtuMI	TCGCGA	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	2 cut(s)	87, 438
Cfr13I	GGNCC	2 cut(s)	601, 832
Cfr42I	CCGCGG	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	853
Csp6I	GTAC	3 cut(s)	487, 680, 861
CviAII	CATG	2 cut(s)	25, 500
CviQI	GTAC	3 cut(s)	487, 680, 861
DdeI	CTNAG	5 cut(s)	35, 120, 504, 702, 723
DpnI	GATC	7 cut(s)	110, 168, 242, 302, 459, 852, 856
DpnII	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
DriI	GACNNNNNGTC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	254, 357
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	2 cut(s)	254, 357
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	24, 442
Eco24I	GRGCYC	2 cut(s)	36, 61
Eco31I	GGTCTC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	601
Eco52I	CGGCCG	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	614, 689
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	236, 282
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	2 cut(s)	24, 442
EcoT38I	GRGCYC	2 cut(s)	36, 61
ErhI	CCWWGG	2 cut(s)	24, 442
FaeI	CATG	2 cut(s)	28, 503
FaiI	YATR	7 cut(s)	26, 491, 501, 538, 740, 771, 791
FaqI	GGGAC	2 cut(s)	162, 856
FatI	CATG	2 cut(s)	24, 499
Fnu4HI	GCNGC	3 cut(s)	145, 439, 806
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	2 cut(s)	36, 61
Fsp4HI	GCNGC	3 cut(s)	145, 439, 806
GlaI	GCGC	2 cut(s)	86, 437
GluI	GCNGC	3 cut(s)	145, 439, 806
GsuI	CTGGAG	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	4 cut(s)	144, 282, 513, 833
HhaI	GCGC	2 cut(s)	87, 438
Hin1II	CATG	2 cut(s)	28, 503
Hin6I	GCGC	2 cut(s)	85, 436
HinP1I	GCGC	2 cut(s)	85, 436
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	6 cut(s)	95, 224, 292, 374, 394, 810
Hpy166II	GTNNAC	2 cut(s)	649, 711
Hpy188I	TCNGA	3 cut(s)	15, 108, 457
Hpy188III	TCNNGA	6 cut(s)	170, 289, 304, 692, 701, 877
Hpy8I	GTNNAC	2 cut(s)	649, 711
Hpy99I	CGWCG	8 cut(s)	92, 137, 140, 143, 224, 266, 269, 272
HpyAV	CCTTC	3 cut(s)	190, 390, 664
HpyCH4III	ACNGT	4 cut(s)	11, 176, 359, 751
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	2 cut(s)	540, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 150
HpyF3I	CTNAG	5 cut(s)	35, 120, 504, 702, 723
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	28, 503
HspAI	GCGC	2 cut(s)	85, 436
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
LmnI	GCTCC	2 cut(s)	31, 239
MaeII	ACGT	1 cut(s)	413
MalI	GATC	7 cut(s)	110, 168, 242, 302, 459, 852, 856
MboI	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
MboII	GAAGA	9 cut(s)	63, 103, 241, 268, 344, 452, 644, 832, 835
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	2 cut(s)	240, 457
MhlI	GDGCHC	2 cut(s)	36, 61
MluCI	AATT	5 cut(s)	213, 528, 626, 684, 782
MlyI	GAGTC	3 cut(s)	89, 218, 383
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	85, 109, 114, 165, 194, 220, 372, 499, 884
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	238, 284
MunI	CAATTG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	2 cut(s)	238, 284
MvnI	CGCG	5 cut(s)	50, 87, 147, 171, 808
MwoI	GCNNNNNNNGC	2 cut(s)	56, 150
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
NlaIII	CATG	2 cut(s)	28, 503
NmeAIII	GCCGAG	1 cut(s)	457
NruI	TCGCGA	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	3 cut(s)	261, 296, 688
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	292, 394, 810
PflFI	GACNNNGTC	1 cut(s)	868
PflMI	CCANNNNNTGG	1 cut(s)	417
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	146, 440, 807
Ple19I	CGATCG	3 cut(s)	303, 853, 857
PleI	GAGTC	3 cut(s)	89, 218, 382
PpsI	GAGTC	3 cut(s)	89, 218, 382
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	236, 282
PspGI	CCWGG	2 cut(s)	236, 282
PspPI	GGNCC	2 cut(s)	601, 832
PspXI	VCTCGAGB	1 cut(s)	60
PsrI	GAACNNNNNNTAC	2 cut(s)	672, 704
PsuI	RGATCY	2 cut(s)	240, 457
PsyI	GACNNNGTC	1 cut(s)	868
PvuI	CGATCG	3 cut(s)	303, 853, 857
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	3 cut(s)	488, 681, 862
RsaNI	GTAC	3 cut(s)	487, 680, 861
RseI	CAYNNNNRTG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	36
SacII	CCGCGG	1 cut(s)	148
SatI	GCNGC	3 cut(s)	145, 439, 806
Sau3AI	GATC	7 cut(s)	108, 166, 240, 300, 457, 850, 854
Sau96I	GGNCC	2 cut(s)	601, 832
SchI	GAGTC	3 cut(s)	89, 218, 383
ScrFI	CCNGG	2 cut(s)	238, 284
SduI	GDGCHC	2 cut(s)	36, 61
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	60
Sfr303I	CCGCGG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	601
SlaI	CTCGAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	60, 875
SmoI	CTYRAG	2 cut(s)	60, 875
Sse9I	AATT	5 cut(s)	213, 528, 626, 684, 782
SsiI	CCGC	6 cut(s)	29, 50, 145, 147, 439, 806
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	236, 282
StyI	CCWWGG	2 cut(s)	24, 442
TaaI	ACNGT	4 cut(s)	11, 176, 359, 751
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	5 cut(s)	61, 114, 290, 849, 853
TasI	AATT	5 cut(s)	213, 528, 626, 684, 782
TauI	GCSGC	3 cut(s)	147, 441, 808
TfiI	GAWTC	3 cut(s)	292, 394, 810
TscAI	CASTG	1 cut(s)	362
TspDTI	ATGAA	5 cut(s)	95, 241, 488, 581, 646
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	362
Tth111I	GACNNNGTC	1 cut(s)	868
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	1 cut(s)	626
XhoI	CTCGAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.