pycom13g08580

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010144
Physical Location & Seq
Forward (+)
5705872 .. 5708330
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
ATGACGTACAGTCCGAAACGAGCCATGGCGGAGCTCAGGCACTCCATCTCGATGGGGGCTCGAGCCACTTCTTCTCCAATGAAGCGCGACGAGGACTCCTCCCCTCTCATCTCCGACACTGAGCCCCAAGACGACGACGACGGCCGCGGTCGCCCCCCCTTCAAGGATCGCGACCGTCCCCTCCTCTCCCATTTCCAATCCATCTGCCCCTCCCTTTCCGACGACCCCAACAGCTCCAGGATCTCACTCTTCATCGTCATCGCCGTCGCAATCTTCGGCCTGGTCTCGATTCTGGCGATCGTGAAACGAGTGAATGCTCCTTACTTGTGTAAAAAAGATGGCATTACTCTTCACTGCCCTCATGTCAAGGAATCACCTTCGCTATGGGAGAATCCGTATTCAGCAACCACATCTTGGAAGCCCTGTGCCGAGCGCCGCCTTGGTGGGATTTCAGATCTTCCACCCGAAAACGAAACAACTGGGTACATATTTATTCACGCTGAAGGTGGTCTAAATCAGCAAAGAATTGCGATATGCAATGCAGTAGCTGTGGCTAAAATAATGAATGCCACCCTTATTTTGCCTGTGCTGAAGCAGGACCAGATTTGGAAAGACCAAACGAAGTTTGAAGATATCTTTGATGTTGACCATTTCATTGATTACCTGAAGGATGATGTACGAATTGTTCGTGATATTCCTGAGTGGTTTACTGACAAAGCTGAGCTATTTACAAGTATAAGACGAACAGTAAAGAACATTCCAAAGTATGCACCTGCACAATTTTACATAGACAATGTTCTGCCACGAATTAAGGAAAAGAAGATAATGGCCCTAAAACCTTTTGTCGATCGATCTCGGGTATGA

Protein Analysis

288

Amino Acids

32.56

Weight (kDa)

8.2

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 162 - 284 1.7e-35 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26370 AT3G26370
fragaria_vesca FvH4_4g25921
malus_domestica MD13G1098200.v1.1 MD16G1099100.v1.1
prunus_persica Prupe.1G247100_v2.0.a1
pyrus_communis pycom13g08580 pycom13g08590 pycom16g08440 pycom16g08450
rosa_chinensis RchiOBHm_Chr4g0433391
rosa_laevigata RLG00000006757
rosa_multiflora Rmu_sc0000759.1_g000007
rosa_roxburghii Rroxscaffold_5G00374940
rosa_rugosa Rorug04G0268400
rosa_samantha Rh4AG323200 Rh4BG330800 Rh4BG330900 Rh4CG346200 Rh4DG327300
rosa_wichuraiana Rw4G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 781
Acc36I ACCTGC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 414
AccII CGCG 3 cut(s) 87, 147, 171
AciI CCGC 4 cut(s) 29, 145, 147, 436
AclWI GGATC 2 cut(s) 174, 248
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 3 cut(s) 522, 611, 686
AfaI GTAC 3 cut(s) 8, 485, 678
AfiI CCNNNNNNNGG 2 cut(s) 163, 414
AgsI TTSAA 2 cut(s) 163, 629
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 2 cut(s) 236, 279
AluBI AGCT 5 cut(s) 34, 234, 548, 719, 724
AluI AGCT 5 cut(s) 34, 234, 548, 719, 724
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 174, 248
AlwNI CAGNNNCTG 1 cut(s) 548
Ama87I CYCGRG 2 cut(s) 60, 855
AoxI GGCC 3 cut(s) 142, 277, 828
AspLEI GCGC 2 cut(s) 87, 435
AspS9I GGNCC 2 cut(s) 598, 829
AsuHPI GGTGA 1 cut(s) 366
AvaI CYCGRG 2 cut(s) 60, 855
AvaII GGWCC 1 cut(s) 598
BanII GRGCYC 3 cut(s) 36, 61, 126
Bbv12I GWGCWC 1 cut(s) 36
BccI CCATC 4 cut(s) 46, 53, 209, 332
BceAI ACGGC 2 cut(s) 157, 248
BciT130I CCWGG 2 cut(s) 238, 281
BcoDI GTCTC 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 781
BglII AGATCT 1 cut(s) 454
BisI GCNGC 2 cut(s) 145, 436
BlpI GCTNAGC 1 cut(s) 720
BlsI GCNGC 2 cut(s) 146, 437
Bme1390I CCNGG 2 cut(s) 238, 281
Bme18I GGWCC 1 cut(s) 598
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 2 cut(s) 60, 855
BmgT120I GGNCC 2 cut(s) 598, 829
BmrFI CCNGG 2 cut(s) 238, 281
BmrI ACTGGG 1 cut(s) 489
BmuI ACTGGG 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpmI CTGGAG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 720
Bsa29I ATCGAT 1 cut(s) 850
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 3 cut(s) 24, 145, 439
BsaXI ACNNNNNCTCC 6 cut(s) 58, 80, 88, 110, 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 414
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 2 cut(s) 238, 281
BseCI ATCGAT 1 cut(s) 850
BseDI CCNNGG 3 cut(s) 24, 145, 439
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 2 cut(s) 163, 414
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 4 cut(s) 49, 111, 690, 711
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 2 cut(s) 88, 173
BseX3I CGGCCG 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 3 cut(s) 87, 147, 171
Bsh1285I CGRYCG 5 cut(s) 145, 151, 175, 300, 850
BshFI GGCC 3 cut(s) 144, 279, 830
BshVI ATCGAT 1 cut(s) 850
BsiEI CGRYCG 5 cut(s) 145, 151, 175, 300, 850
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 2 cut(s) 60, 855
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 163, 414
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 162
BsmI GAATGC 2 cut(s) 319, 571
BsnI GGCC 3 cut(s) 144, 279, 830
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 60, 855
Bsp1286I GDGCHC 3 cut(s) 36, 61, 126
Bsp143I GATC 6 cut(s) 166, 240, 297, 454, 847, 851
Bsp1720I GCTNAGC 1 cut(s) 720
Bsp19I CCATGG 1 cut(s) 24
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 4 cut(s) 29, 145, 147, 436
BspANI GGCC 3 cut(s) 144, 279, 830
BspCNI CTCAG 4 cut(s) 48, 112, 691, 712
BspDI ATCGAT 1 cut(s) 850
BspFNI CGCG 3 cut(s) 87, 147, 171
BspMI ACCTGC 1 cut(s) 781
BspPI GGATC 2 cut(s) 174, 248
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 3 cut(s) 24, 145, 439
BssMI GATC 6 cut(s) 166, 240, 297, 454, 847, 851
BssT1I CCWWGG 2 cut(s) 24, 439
Bst2UI CCWGG 2 cut(s) 238, 281
Bst4CI ACNGT 3 cut(s) 11, 176, 748
Bst6I CTCTTC 2 cut(s) 254, 354
BstDEI CTNAG 4 cut(s) 35, 120, 699, 720
BstDSI CCRYGG 2 cut(s) 24, 145
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 3 cut(s) 87, 147, 171
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 2 cut(s) 87, 435
BstKTI GATC 6 cut(s) 169, 243, 300, 457, 850, 854
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 6 cut(s) 166, 240, 297, 454, 847, 851
BstMCI CGRYCG 5 cut(s) 145, 151, 175, 300, 850
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 2 cut(s) 238, 281
BstSCI CCNGG 2 cut(s) 236, 279
BstUI CGCG 3 cut(s) 87, 147, 171
BstX2I RGATCY 2 cut(s) 240, 454
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 2 cut(s) 240, 454
BstZI CGGCCG 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 850
BsuRI GGCC 3 cut(s) 144, 279, 830
BsuTUI ATCGAT 1 cut(s) 850
BtgI CCRYGG 2 cut(s) 24, 145
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 117, 352
BtuMI TCGCGA 1 cut(s) 171
BveI ACCTGC 1 cut(s) 781
CaiI CAGNNNCTG 1 cut(s) 548
CfoI GCGC 2 cut(s) 87, 435
Cfr13I GGNCC 2 cut(s) 598, 829
Cfr42I CCGCGG 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 850
Csp6I GTAC 3 cut(s) 7, 484, 677
CviAII CATG 2 cut(s) 25, 362
CviQI GTAC 3 cut(s) 7, 484, 677
DdeI CTNAG 4 cut(s) 35, 120, 699, 720
DpnI GATC 6 cut(s) 168, 242, 299, 456, 849, 853
DpnII GATC 6 cut(s) 166, 240, 297, 454, 847, 851
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 254, 354
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 2 cut(s) 254, 354
EciI GGCGGA 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 24, 439
Eco24I GRGCYC 3 cut(s) 36, 61, 126
Eco31I GGTCTC 1 cut(s) 289
Eco32I GATATC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 598
Eco52I CGGCCG 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 3 cut(s) 522, 611, 686
Eco88I CYCGRG 2 cut(s) 60, 855
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 236, 279
EcoRV GATATC 1 cut(s) 634
EcoT14I CCWWGG 2 cut(s) 24, 439
EcoT38I GRGCYC 3 cut(s) 36, 61, 126
ErhI CCWWGG 2 cut(s) 24, 439
FaeI CATG 2 cut(s) 28, 365
FaiI YATR 9 cut(s) 26, 363, 385, 488, 535, 737, 768, 788, 862
FaqI GGGAC 1 cut(s) 162
FatI CATG 2 cut(s) 24, 361
Fnu4HI GCNGC 2 cut(s) 145, 436
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 3 cut(s) 36, 61, 126
Fsp4HI GCNGC 2 cut(s) 145, 436
GlaI GCGC 2 cut(s) 86, 434
GluI GCNGC 2 cut(s) 145, 436
GsuI CTGGAG 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 3 cut(s) 144, 279, 830
HhaI GCGC 2 cut(s) 87, 435
Hin1II CATG 2 cut(s) 28, 365
Hin6I GCGC 2 cut(s) 85, 433
HinP1I GCGC 2 cut(s) 85, 433
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 4 cut(s) 95, 289, 371, 391
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 2 cut(s) 646, 708
Hpy188I TCNGA 4 cut(s) 15, 115, 220, 454
Hpy188III TCNNGA 6 cut(s) 49, 170, 286, 301, 689, 698
Hpy8I GTNNAC 2 cut(s) 646, 708
Hpy99I CGWCG 6 cut(s) 92, 137, 140, 143, 224, 269
HpyAV CCTTC 4 cut(s) 169, 387, 497, 661
HpyCH4III ACNGT 3 cut(s) 11, 176, 748
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 4 cut(s) 537, 542, 770, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 4 cut(s) 35, 120, 699, 720
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 2 cut(s) 28, 365
HspAI GCGC 2 cut(s) 85, 433
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 6 cut(s) 166, 240, 297, 454, 847, 851
LmnI GCTCC 3 cut(s) 31, 239, 322
MaeII ACGT 1 cut(s) 5
MalI GATC 6 cut(s) 168, 242, 299, 456, 849, 853
MboI GATC 6 cut(s) 166, 240, 297, 454, 847, 851
MboII GAAGA 7 cut(s) 63, 241, 265, 341, 449, 641, 832
MflI RGATCY 2 cut(s) 240, 454
MhlI GDGCHC 3 cut(s) 36, 61, 126
MluCI AATT 4 cut(s) 525, 681, 779, 807
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 138, 243
MnlI CCTC 7 cut(s) 85, 109, 114, 191, 194, 220, 369
MseI TTAA 1 cut(s) 810
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 238, 281
Mva1269I GAATGC 2 cut(s) 319, 571
MvaI CCWGG 2 cut(s) 238, 281
MvnI CGCG 3 cut(s) 87, 147, 171
MwoI GCNNNNNNNGC 1 cut(s) 150
NcoI CCATGG 1 cut(s) 24
NdeII GATC 6 cut(s) 166, 240, 297, 454, 847, 851
NlaIII CATG 2 cut(s) 28, 365
NmeAIII GCCGAG 1 cut(s) 454
NruI TCGCGA 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 781
PcsI WCGNNNNNNNCGW 4 cut(s) 11, 261, 293, 685
PctI GAATGC 2 cut(s) 319, 571
PfeI GAWTC 3 cut(s) 289, 371, 391
PflMI CCANNNNNTGG 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 2 cut(s) 146, 437
Ple19I CGATCG 2 cut(s) 300, 850
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 236, 279
PspGI CCWGG 2 cut(s) 236, 279
PspPI GGNCC 2 cut(s) 598, 829
PspXI VCTCGAGB 1 cut(s) 60
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 2 cut(s) 240, 454
PvuI CGATCG 2 cut(s) 300, 850
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 3 cut(s) 8, 485, 678
RsaNI GTAC 3 cut(s) 7, 484, 677
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 36
SacII CCGCGG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 2 cut(s) 145, 436
Sau3AI GATC 6 cut(s) 166, 240, 297, 454, 847, 851
Sau96I GGNCC 2 cut(s) 598, 829
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 238, 281
SduI GDGCHC 3 cut(s) 36, 61, 126
Sfr274I CTCGAG 1 cut(s) 60
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 1 cut(s) 598
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 4 cut(s) 525, 681, 779, 807
SsiI CCGC 4 cut(s) 29, 145, 147, 436
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 236, 279
StyI CCWWGG 2 cut(s) 24, 439
TaaI ACNGT 3 cut(s) 11, 176, 748
TaiI ACGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 50, 61, 287, 846, 850
TasI AATT 4 cut(s) 525, 681, 779, 807
TauI GCSGC 2 cut(s) 147, 438
TfiI GAWTC 3 cut(s) 289, 371, 391
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TscAI CASTG 2 cut(s) 124, 359
TspDTI ATGAA 4 cut(s) 95, 241, 578, 643
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 2 cut(s) 124, 359
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 598
XhoI CTCGAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.