Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Reverse (-)

5996493 .. 5996822

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGATTTTCCGGGAAATCTCAGCCGCTGGATCACATGGGTTTCGATTCCGACCCTAAAAAAACATGGGTCGTCGCCGGAATCCCACTACGAGCGCCGTTAAAGCCGTTGTATACAAACCCGGTAGAGCAAGATGACGCGGAAGAGTGCTCGACGACTCCCACGGCGGAAGAGTCCAGGATTCCGGCGACTCTGACGTGTCCGCCGGCTCCCAGAAAACGAAAAGCGGCGGCTGCTTCGAAGTGCAAATTTAATGGTGTTAGGGAGTTCTTCACTCCTCCAGATTTAGAAACCGTGTTTATACGACGCCATGTTGAGAGCGCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

7.73

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AccII	CGCG	1 cut(s)	140
AciI	CCGC	6 cut(s)	26, 140, 167, 203, 227, 230
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	197
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	97, 323
AsuC2I	CCSGG	2 cut(s)	13, 122
AsuII	TTCGAA	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	220
BceAI	ACGGC	3 cut(s)	82, 91, 180
BciT130I	CCWGG	1 cut(s)	178
BcnI	CCSGG	2 cut(s)	13, 122
BfoI	RGCGCY	2 cut(s)	98, 324
BisI	GCNGC	4 cut(s)	26, 228, 231, 234
BlsI	GCNGC	4 cut(s)	27, 229, 232, 235
Bme1390I	CCNGG	3 cut(s)	13, 122, 178
BmgBI	CACGTC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	3 cut(s)	13, 122, 178
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	13, 122
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	5 cut(s)	12, 78, 122, 185, 206
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	6 cut(s)	26, 140, 167, 203, 227, 230
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	31
BssNAI	GTATAC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	307
Bst1107I	GTATAC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	2 cut(s)	138, 165
BstACI	GRCGYC	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	2 cut(s)	98, 324
BstHHI	GCGC	2 cut(s)	97, 323
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 233
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	3 cut(s)	11, 120, 176
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	220
BstZ17I	GTATAC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	2 cut(s)	97, 323
Cfr10I	RCCGGY	1 cut(s)	205
CseI	GACGC	2 cut(s)	146, 315
CviAII	CATG	3 cut(s)	37, 66, 311
CviJI	RGCY	4 cut(s)	25, 106, 209, 233
CviKI_1	RGCY	4 cut(s)	25, 106, 209, 233
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	138, 165
EarI	CTCTTC	2 cut(s)	138, 165
EciI	GGCGGA	2 cut(s)	182, 192
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	40, 69, 314
FaiI	YATR	5 cut(s)	38, 67, 114, 302, 312
FatI	CATG	3 cut(s)	36, 65, 310
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	4 cut(s)	26, 228, 231, 234
Fsp4HI	GCNGC	4 cut(s)	26, 228, 231, 234
GlaI	GCGC	2 cut(s)	96, 322
GluI	GCNGC	4 cut(s)	26, 228, 231, 234
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	2 cut(s)	98, 324
HapII	CCGG	5 cut(s)	12, 78, 122, 185, 206
HgaI	GACGC	2 cut(s)	146, 315
HhaI	GCGC	2 cut(s)	97, 323
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	40, 69, 314
Hin6I	GCGC	2 cut(s)	95, 321
HinP1I	GCGC	2 cut(s)	95, 321
HinfI	GANTC	6 cut(s)	47, 81, 157, 173, 181, 190
HpaII	CCGG	5 cut(s)	12, 78, 122, 185, 206
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	52, 195
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	3 cut(s)	77, 157, 309
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 233
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	40, 69, 314
HspAI	GCGC	2 cut(s)	95, 321
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	197
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	3 cut(s)	155, 182, 262
MfeI	CAATTG	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	248, 325
MlyI	GAGTC	3 cut(s)	151, 182, 184
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	1 cut(s)	288
MroNI	GCCGGC	1 cut(s)	205
MseI	TTAA	2 cut(s)	101, 252
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	5 cut(s)	12, 78, 122, 185, 206
MspR9I	CCNGG	3 cut(s)	13, 122, 178
MunI	CAATTG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	103, 233
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	2 cut(s)	13, 122
NdeII	GATC	1 cut(s)	31
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	40, 69, 314
NlaIV	GGNNCC	1 cut(s)	210
NspV	TTCGAA	1 cut(s)	239
PdiI	GCCGGC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	47, 81, 181
PfoI	TCCNGGA	2 cut(s)	11, 176
PkrI	GCNGC	4 cut(s)	27, 229, 232, 235
PleI	GAGTC	3 cut(s)	151, 181, 184
PpsI	GAGTC	3 cut(s)	151, 181, 184
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	101, 252
SatI	GCNGC	4 cut(s)	26, 228, 231, 234
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	3 cut(s)	151, 182, 184
ScrFI	CCNGG	3 cut(s)	13, 122, 178
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	1 cut(s)	200
SfuI	TTCGAA	1 cut(s)	239
Sse9I	AATT	2 cut(s)	248, 325
SsiI	CCGC	6 cut(s)	26, 140, 167, 203, 227, 230
StyD4I	CCNGG	3 cut(s)	11, 120, 176
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	45, 152, 239
TasI	AATT	2 cut(s)	248, 325
TauI	GCSGC	3 cut(s)	28, 230, 233
TfiI	GAWTC	3 cut(s)	47, 81, 181
Tru1I	TTAA	2 cut(s)	101, 252
Tru9I	TTAA	2 cut(s)	101, 252
TseI	GCWGC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.