pycom13g12170

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016825
Physical Location & Seq
Reverse (-)
8416032 .. 8417654
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
ATGGGTGCAAAGCAAACTTACAAACTACTTCTTGCCATTGCGGTGGCGGCGGTGGTGGTGATGCTTGCCACCTTATGCCGCGGCTCCAGCGTGGGGCATACGCCGTCTGCGAACGAGGAAGTTATTGATGAGTTTGTGGAGTTTAAGGACCAGTCAAGGCAGACGGATGACGCGAGGGCGGCGGAGAAGGCGAGAGAGGGTAAAGAAGGGTCGGAGTCGTGGACGGAGTGGGCTAAAGAGAAAATCACCGGAGGACTTGGGCTGAAGCAGGATAATGAGAATTATTTGAAGCATAGTGCTAAGAAGGCTTCTGATGCTACTTATGAGACTGCTTCTGGGGCTGGTGAGTATAGCACAGAAAAGGCTAGAAACATTAAAGGTACGGCTGCAAAGAAATCTGGAGAGATGAAAGAAACAGCCGCCGAGAAGGCCGGCAAGACGATGGATGCAGCAATGGAGAAGGTGTATGAGGCCACTAAATCGGCCAAAGACATGACTTACGATGCTGCTAATGCCGCAAAGGAGAAGGCCTATGAGGCCACTAATGCGGCTTATGAGACCACAAAGTCAGCAAAAGACAATGCTTATGAGGCTACGAAGGAAAAGACTTATGATACTGCAGAGGCAGCGAAGGAAAAGGCTTATGAGGCGGCGAAGGCGGCAAAGGAAAAGACTTTTGGTACGGCGGGTGAAGCTAAGGAGAAGGCTTATGAGGCCACAAAGACGGCGACGGACAAGACTTCTGATACGGCGGGTGCAGCGAAGGAGAAGGCATACGAGGCCACAAAGGCGGCAAAAGACAAGACATATCAAACCAAGAATGCAGCTGAGGAGGCTACAAAGGCGGCGAAAGACAAAACGTATGAGACGAAGACCGCAGCTGAGGAGACGGCCGGAAGAACAGCAGAGAAAGCGAATGAGGCTACCGGTTACGCGGCAGAGAAAGCAAGAGAAGCGAAAGAAAAAGCAGCGCAAACGGCAGAGGAGGTGAAGAACAAGGCTTATGAGAAAGCAGAGGAGACTAAAGAGGCAAAGGAGAAGGCAAAGGAGAAGTCCCAGAAGATTAAGGGCGAAGTTGCTGGCCGCGGCCATGACGAGGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

369

Amino Acids

39.58

Weight (kDa)

6.21

Isoelectric Point (pI)

15.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_4 PF02987 116 - 158 4.6e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 565
AccII CGCG 4 cut(s) 81, 173, 935, 1086
AcoI YGGCCR 4 cut(s) 483, 891, 1081, 1087
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 382, 682
AfiI CCNNNNNNNGG 2 cut(s) 93, 1096
AgeI ACCGGT 1 cut(s) 926
AgsI TTSAA 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 4 cut(s) 695, 827, 881, 1102
AluI AGCT 4 cut(s) 695, 827, 881, 1102
Alw21I GWGCWC 1 cut(s) 1104
Alw26I GTCTC 5 cut(s) 320, 551, 860, 881, 1013
ApeKI GCWGC 8 cut(s) 386, 449, 506, 626, 758, 824, 878, 968
ArsI GACNNNNNNTTYG 2 cut(s) 1037, 1069
AsiGI ACCGGT 1 cut(s) 926
AspLEI GCGC 1 cut(s) 973
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 5 cut(s) 70, 238, 356, 701, 1000
AvaII GGWCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 1104
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 1104
BbvCI CCTCAGC 2 cut(s) 828, 882
BbvI GCAGC 8 cut(s) 373, 461, 493, 638, 770, 836, 890, 980
BccI CCATC 1 cut(s) 436
BceAI ACGGC 7 cut(s) 88, 399, 699, 741, 765, 906, 993
BcoDI GTCTC 5 cut(s) 320, 551, 860, 881, 1013
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 618
BglI GCCNNNNNGGC 3 cut(s) 428, 536, 788
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 4 cut(s) 51, 304, 436, 493
BpiI GAAGAC 1 cut(s) 878
BpmI CTGGAG 2 cut(s) 70, 420
Bpu10I CCTNAGC 3 cut(s) 696, 828, 882
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 79, 1084
BsaWI WCCGGW 2 cut(s) 248, 926
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 1096
Bse118I RCCGGY 2 cut(s) 431, 926
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 2 cut(s) 36, 459
BseDI CCNNGG 2 cut(s) 79, 1084
BseGI GGATG 2 cut(s) 172, 451
BseLI CCNNNNNNNGG 2 cut(s) 93, 1096
BseMI GCAATG 2 cut(s) 36, 459
BseMII CTCAG 2 cut(s) 819, 873
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 4 cut(s) 845, 899, 998, 1031
BseX3I CGGCCG 1 cut(s) 891
BseXI GCAGC 8 cut(s) 373, 461, 493, 638, 770, 836, 890, 980
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 4 cut(s) 81, 173, 935, 1086
Bsh1285I CGRYCG 1 cut(s) 894
BshTI ACCGGT 1 cut(s) 926
BsiEI CGRYCG 1 cut(s) 894
BsiHKAI GWGCWC 1 cut(s) 1104
BsiSI CCGG 4 cut(s) 249, 432, 894, 927
BslFI GGGAC 1 cut(s) 1039
BslI CCNNNNNNNGG 2 cut(s) 93, 1096
BsmAI GTCTC 5 cut(s) 320, 551, 860, 881, 1013
BsmBI CGTCTC 2 cut(s) 860, 881
BsmFI GGGAC 1 cut(s) 1039
BsmI GAATGC 1 cut(s) 826
Bso31I GGTCTC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 1104
BspCNI CTCAG 2 cut(s) 820, 874
BspFNI CGCG 4 cut(s) 81, 173, 935, 1086
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 622
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 2 cut(s) 36, 459
BsrFI RCCGGY 2 cut(s) 431, 926
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 2 cut(s) 431, 926
BssECI CCNNGG 2 cut(s) 79, 1084
BstC8I GCNNGC 3 cut(s) 66, 433, 1081
BstDEI CTNAG 4 cut(s) 300, 696, 828, 882
BstDSI CCRYGG 2 cut(s) 79, 1084
BstF5I GGATG 2 cut(s) 172, 451
BstFNI CGCG 4 cut(s) 81, 173, 935, 1086
BstHHI GCGC 1 cut(s) 973
BstMAI GTCTC 5 cut(s) 320, 551, 860, 881, 1013
BstMCI CGRYCG 1 cut(s) 894
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 4 cut(s) 81, 173, 935, 1086
BstV1I GCAGC 8 cut(s) 373, 461, 493, 638, 770, 836, 890, 980
BstV2I GAAGAC 1 cut(s) 878
BstXI CCANNNNNNTGG 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 891
BtgI CCRYGG 2 cut(s) 79, 1084
BtsCI GGATG 2 cut(s) 172, 451
Cac8I GCNNGC 3 cut(s) 66, 433, 1081
CfoI GCGC 1 cut(s) 973
Cfr10I RCCGGY 2 cut(s) 431, 926
Cfr13I GGNCC 1 cut(s) 148
Cfr42I CCGCGG 2 cut(s) 82, 1087
CseI GACGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 381, 681
CspAI ACCGGT 1 cut(s) 926
CviAII CATG 2 cut(s) 493, 1091
CviQI GTAC 2 cut(s) 381, 681
DdeI CTNAG 4 cut(s) 300, 696, 828, 882
DrdI GACNNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 4 cut(s) 483, 891, 1081, 1087
EagI CGGCCG 1 cut(s) 891
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 1102
EclXI CGGCCG 1 cut(s) 891
Eco147I AGGCCT 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 1104
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 891
Eco53kI GAGCTC 1 cut(s) 1102
Eco57I CTGAAG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 1102
EcoT38I GRGCYC 1 cut(s) 1104
Esp3I CGTCTC 2 cut(s) 860, 881
FaeI CATG 2 cut(s) 496, 1094
FaqI GGGAC 1 cut(s) 1039
FatI CATG 2 cut(s) 492, 1090
FauI CCCGC 2 cut(s) 679, 745
FokI GGATG 2 cut(s) 179, 458
FriOI GRGCYC 1 cut(s) 1104
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 972
GsuI CTGGAG 2 cut(s) 70, 420
HapII CCGG 4 cut(s) 249, 432, 894, 927
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 973
Hin1II CATG 2 cut(s) 496, 1094
Hin6I GCGC 1 cut(s) 971
HinP1I GCGC 1 cut(s) 971
HinfI GANTC 1 cut(s) 215
HpaII CCGG 4 cut(s) 249, 432, 894, 927
HphI GGTGA 5 cut(s) 70, 238, 356, 701, 1000
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 4 cut(s) 214, 313, 745, 1106
Hpy188III TCNNGA 1 cut(s) 399
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 733
HpyCH4IV ACGT 1 cut(s) 860
HpyCH4V TGCA 6 cut(s) 8, 389, 449, 620, 758, 824
HpyF3I CTNAG 4 cut(s) 300, 696, 828, 882
HpySE526I ACGT 1 cut(s) 860
Hsp92II CATG 2 cut(s) 496, 1094
HspAI GCGC 1 cut(s) 971
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
KspI CCGCGG 2 cut(s) 82, 1087
LmnI GCTCC 2 cut(s) 89, 1099
Lsp1109I GCAGC 8 cut(s) 373, 461, 493, 638, 770, 836, 890, 980
LweI GCATC 4 cut(s) 51, 304, 436, 493
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 860
MaeIII GTNAC 1 cut(s) 929
MboII GAAGA 4 cut(s) 883, 909, 1003, 1072
MhlI GDGCHC 1 cut(s) 1104
MluCI AATT 1 cut(s) 280
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 192
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 3 cut(s) 144, 375, 1065
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 4 cut(s) 81, 827, 881, 1086
MspI CCGG 4 cut(s) 249, 432, 894, 927
Mva1269I GAATGC 1 cut(s) 826
MvnI CGCG 4 cut(s) 81, 173, 935, 1086
NaeI GCCGGC 1 cut(s) 433
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 2 cut(s) 496, 1094
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 1 cut(s) 448
PceI AGGCCT 1 cut(s) 530
PcsI WCGNNNNNNNCGW 3 cut(s) 107, 170, 866
PctI GAATGC 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 926
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 1104
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 622
PvuII CAGCTG 2 cut(s) 827, 881
RsaI GTAC 2 cut(s) 382, 682
RsaNI GTAC 2 cut(s) 381, 681
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 1104
SacII CCGCGG 2 cut(s) 82, 1087
SaqAI TTAA 3 cut(s) 144, 375, 1065
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 1104
SetI ASST 9 cut(s) 74, 382, 465, 697, 829, 863, 883, 990, 1104
SfaNI GCATC 4 cut(s) 51, 304, 436, 493
SfcI CTRYAG 1 cut(s) 618
SfiI GGCCNNNNNGGCC 1 cut(s) 536
Sfr303I CCGCGG 2 cut(s) 82, 1087
SgrBI CCGCGG 2 cut(s) 82, 1087
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 1 cut(s) 280
SseBI AGGCCT 1 cut(s) 530
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 1104
StuI AGGCCT 1 cut(s) 530
TaiI ACGT 1 cut(s) 863
TasI AATT 1 cut(s) 280
Tru1I TTAA 3 cut(s) 144, 375, 1065
Tru9I TTAA 3 cut(s) 144, 375, 1065
TseI GCWGC 8 cut(s) 386, 449, 506, 626, 758, 824, 878, 968
TspDTI ATGAA 1 cut(s) 422
TspGWI ACGGA 3 cut(s) 179, 239, 746
VpaK11BI GGWCC 1 cut(s) 148
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.