Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018732

Physical Location & Seq

Genomic Coordinates Reverse (-)

8493679 .. 8494568

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCAGCACGTCTTCATTCTACTCGTGTTCTTGGGACTTTTGGTTATCATGCTCCAGAGTATGCAATGACTGGACAGCTGAGTTCAAAAAGTGATGTCTACAGCTTTGGTGTAGTGTTGCTTGAACTCTTGACTGGGCGTAAACCTGTTGATCACACATTGCCGCGTGGGCAGCAGAGCCTTGTGACATGGGCAACACCAAAACTCAGTGAGGATAAGGTGAAGCAATGTGTTGATGCTAGACTCAATGGAGAGTACCTTTCCAAGGCAGTTGCAAAGTTGGCTGCTGTTGCCGCCTTGTGCGTCCAATATGAAGCTGATTTCCGGCCAAATATGAGCATTGTTGTCAAGGCTCTACAGCCTCTTTTGCATGCTCGGTCCGCTCCCCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.34

Weight (kDa)

9.39

Isoelectric Point (pI)

24.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62220
pyrus_communis	pycom13g12270 pycom16g12110
rosa_chinensis	RchiOBHm_Chr3g0487491
rosa_laevigata	RLG00000003754 RLG00000023002
rosa_multiflora	Rmu_co8428993.1_g000001 Rmu_sc0009883.1_g000004
rosa_samantha	Rh1CG082500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	166
AciI	CCGC	3 cut(s)	164, 294, 381
AcoI	YGGCCR	1 cut(s)	326
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	87, 125
AjiI	CACGTC	1 cut(s)	11
AluBI	AGCT	3 cut(s)	79, 105, 317
AluI	AGCT	3 cut(s)	79, 105, 317
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	5, 172, 284
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	378
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	17, 184, 271
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	100, 356
BglI	GCCNNNNNGGC	1 cut(s)	169
BisI	GCNGC	5 cut(s)	6, 164, 173, 285, 294
BlsI	GCNGC	5 cut(s)	7, 165, 174, 286, 295
Bme18I	GGWCC	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	5
BpmI	CTGGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	76, 139
Bse3DI	GCAATG	3 cut(s)	72, 158, 233
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	3 cut(s)	72, 158, 233
BseMII	CTCAG	2 cut(s)	71, 220
BseNI	ACTGG	2 cut(s)	76, 139
BseXI	GCAGC	3 cut(s)	17, 184, 271
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	3 cut(s)	164, 294, 381
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	72, 219
BspFNI	CGCG	1 cut(s)	166
BsrBI	CCGCTC	1 cut(s)	383
BsrDI	GCAATG	3 cut(s)	72, 158, 233
BsrI	ACTGG	2 cut(s)	76, 139
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	151
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	80, 206
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	7 cut(s)	169, 172, 281, 290, 293, 367, 380
BstNSI	RCATGY	1 cut(s)	374
BstSFI	CTRYAG	2 cut(s)	100, 356
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	17, 184, 271
BstV2I	GAAGAC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	378
CpoI	CGGWCCG	1 cut(s)	378
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	256
CspI	CGGWCCG	1 cut(s)	378
CviAII	CATG	3 cut(s)	50, 189, 371
CviJI	RGCY	8 cut(s)	79, 105, 180, 284, 317, 328, 353, 361
CviKI_1	RGCY	8 cut(s)	79, 105, 180, 284, 317, 328, 353, 361
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	80, 206
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	53, 192, 374
FaiI	YATR	6 cut(s)	51, 63, 190, 312, 335, 372
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	3 cut(s)	49, 188, 370
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	6, 164, 173, 285, 294
Fsp4HI	GCNGC	5 cut(s)	6, 164, 173, 285, 294
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	5 cut(s)	6, 164, 173, 285, 294
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	1 cut(s)	325
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	53, 192, 374
HinfI	GANTC	1 cut(s)	243
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	100, 143
Hpy188III	TCNNGA	2 cut(s)	56, 130
Hpy8I	GTNNAC	2 cut(s)	100, 143
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	65, 275, 370
HpyF10VI	GCNNNNNNNGC	7 cut(s)	169, 172, 281, 290, 293, 367, 380
HpyF3I	CTNAG	2 cut(s)	80, 206
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	53, 192, 374
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	58, 388
LpnPI	CCDG	5 cut(s)	57, 69, 120, 159, 338
Lsp1109I	GCAGC	3 cut(s)	17, 184, 271
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	153
MbiI	CCGCTC	1 cut(s)	383
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	2 cut(s)	205, 372
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	7 cut(s)	169, 172, 281, 290, 293, 367, 380
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	53, 192, 374
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	374
PkrI	GCNGC	5 cut(s)	7, 165, 174, 286, 295
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
Rsr2I	CGGWCCG	1 cut(s)	378
RsrII	CGGWCCG	1 cut(s)	378
SatI	GCNGC	5 cut(s)	6, 164, 173, 285, 294
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	237
SetI	ASST	7 cut(s)	13, 81, 107, 148, 222, 261, 319
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	100, 356
SinI	GGWCC	1 cut(s)	378
SphI	GCATGC	1 cut(s)	374
SsiI	CCGC	3 cut(s)	164, 294, 381
SspMI	CTAG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	13
TaqII	GACCGA	1 cut(s)	366
TauI	GCSGC	2 cut(s)	166, 296
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	5, 172, 284
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	5, 327
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	263
XceI	RCATGY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.