Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018732

Physical Location & Seq

Genomic Coordinates Reverse (-)

16509132 .. 16510127

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAGCACGTCTTTACTCCACTTGTGCTCTAGGAACCTTTGGTTATCATGCCCCAAAATATGCGATGTCTGAACAGTTGAATGCCAAAAGTGATACTTACACTTTTGGTGTTGTCCTGCTAGAGCTTTTGACCAGAAGAAAACCTGTTGATCATACATTACCATGGGGATTGCAGAGCCTGGTGACATGGTGCATTGATGCAAGACTAGGAGGAGAATTCCTCACCAAGGCTGTTGCAAAGATGGCTGCAGTTGCTGCTTTGTGCGTGCAATATGAGGTTGATTTCCGCCCAAACTTGAGCATTGCGGTCAAAGCCCTACAACCACTGCTAAATGCTCGGCCTGGACCCACTGGTGAATCGCCAAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

125

Amino Acids

13.48

Weight (kDa)

8.86

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62220
pyrus_communis	pycom13g12270 pycom16g12110
rosa_chinensis	RchiOBHm_Chr3g0487491
rosa_laevigata	RLG00000003754 RLG00000023002
rosa_multiflora	Rmu_co8428993.1_g000001 Rmu_sc0009883.1_g000004
rosa_samantha	Rh1CG082500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	289, 308
AcsI	RAATTY	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	82
AjiI	CACGTC	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	180, 343
AluBI	AGCT	2 cut(s)	127, 369
AluI	AGCT	2 cut(s)	127, 369
Alw21I	GWGCWC	1 cut(s)	31
AlwNI	CAGNNNCTG	2 cut(s)	181, 257
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	5, 248, 257
ApoI	RAATTY	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	196, 217, 368
AvaII	GGWCC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	17, 235, 244
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	182, 345
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	3 cut(s)	32, 122, 209
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	3 cut(s)	6, 249, 258
BlsI	GCNGC	3 cut(s)	7, 250, 259
Bme1390I	CCNGG	2 cut(s)	182, 345
Bme18I	GGWCC	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	37, 349
BmrFI	CCNGG	2 cut(s)	182, 345
BmsI	GCATC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BpuEI	CTTGAG	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	164, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	182, 345
BseDI	CCNNGG	2 cut(s)	164, 228
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	17, 235, 244
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	151
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	2 cut(s)	289, 308
BspANI	GGCC	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	37, 349
BspMAI	CTGCAG	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	164, 228
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	2 cut(s)	164, 228
Bst2UI	CCWGG	2 cut(s)	182, 345
Bst4CI	ACNGT	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 254, 257, 314
BstNI	CCWGG	2 cut(s)	182, 345
BstSCI	CCNGG	2 cut(s)	180, 343
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	17, 235, 244
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	80
BtrI	CACGTC	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	326, 351
Cac8I	GCNNGC	1 cut(s)	269
CaiI	CAGNNNCTG	2 cut(s)	181, 257
Cfr13I	GGNCC	1 cut(s)	347
CviAII	CATG	3 cut(s)	50, 165, 189
CviJI	RGCY	7 cut(s)	127, 180, 233, 248, 317, 343, 369
CviKI_1	RGCY	7 cut(s)	127, 180, 233, 248, 317, 343, 369
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	164, 228
Eco47I	GGWCC	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	180, 343
EcoT14I	CCWWGG	2 cut(s)	164, 228
ErhI	CCWWGG	2 cut(s)	164, 228
FaeI	CATG	3 cut(s)	53, 168, 192
FaiI	YATR	6 cut(s)	51, 63, 156, 166, 190, 276
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
FatI	CATG	3 cut(s)	49, 164, 188
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	6, 249, 258
Fsp4HI	GCNGC	3 cut(s)	6, 249, 258
FspBI	CTAG	3 cut(s)	32, 122, 209
GluI	GCNGC	3 cut(s)	6, 249, 258
HaeIII	GGCC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	53, 168, 192
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	1 cut(s)	359
HphI	GGTGA	3 cut(s)	196, 217, 368
Hpy188I	TCNGA	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	6 cut(s)	175, 195, 203, 239, 251, 271
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 254, 257, 314
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	53, 168, 192
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	131, 148, 159, 167, 194, 330, 339, 357
Lsp1109I	GCAGC	3 cut(s)	17, 235, 244
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	32, 122, 209
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	3 cut(s)	206, 233, 271
MslI	CAYNNNNRTG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	182, 345
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	182, 345
MwoI	GCNNNNNNNGC	4 cut(s)	245, 254, 257, 314
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	53, 168, 192
NlaIV	GGNNCC	2 cut(s)	37, 349
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	7, 250, 259
Psp6I	CCWGG	2 cut(s)	180, 343
PspGI	CCWGG	2 cut(s)	180, 343
PspN4I	GGNNCC	2 cut(s)	37, 349
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	2 cut(s)	181, 257
RseI	CAYNNNNRTG	1 cut(s)	163
SatI	GCNGC	3 cut(s)	6, 249, 258
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	182, 345
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	13, 41, 129, 148, 282, 371
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	289, 308
SspMI	CTAG	3 cut(s)	32, 122, 209
StyD4I	CCNGG	2 cut(s)	180, 343
StyI	CCWWGG	2 cut(s)	164, 228
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	1 cut(s)	13
TasI	AATT	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	2 cut(s)	333, 358
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	5, 248, 257
Tsp45I	GTSAC	1 cut(s)	184
TspRI	CASTG	2 cut(s)	333, 358
VpaK11BI	GGWCC	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	218
XspI	CTAG	3 cut(s)	32, 122, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.