Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018732

Physical Location & Seq

Genomic Coordinates Forward (+)

34713215 .. 34714201

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAGCACGTCTTCACTCCACTCGTGCTTTAGGAGCCTTTGGTTATCGATTGAATGCCAAAAGTGATACTTACACTTTTGGTGTTGTCCTGCTAGAGCTTTTGACCAGAAGAAAACCATCAACAACATTACCACGGGGACTGCAGAGCCTGGTGACATGGTGCATTGATGCTAGACTAGGAGGAGAATTCCTCACCAAGGCTGTTGCAAAGATGGCTGCAGTTGCTGCCTTGTGTGTGCAATATGAGGCTGATTTCCGCCCAAACATGAGCATTGCGGTCAAAGCGCTACAACCACTGCTAAATGCTTGGCCTGGACCCACTGGTGAATCGCCAAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

114

Amino Acids

12.32

Weight (kDa)

9.83

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62220
pyrus_communis	pycom13g12270 pycom16g12110
rosa_chinensis	RchiOBHm_Chr3g0487491
rosa_laevigata	RLG00000003754 RLG00000023002
rosa_multiflora	Rmu_co8428993.1_g000001 Rmu_sc0009883.1_g000004
rosa_samantha	Rh1CG082500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	259, 278
AcsI	RAATTY	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	150, 313
AluBI	AGCT	2 cut(s)	100, 339
AluI	AGCT	2 cut(s)	100, 339
AlwNI	CAGNNNCTG	2 cut(s)	151, 227
Aor51HI	AGCGCT	1 cut(s)	288
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	5, 218, 227
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	166, 187, 338
AvaII	GGWCC	1 cut(s)	317
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	17, 205, 214
BccI	CCATC	2 cut(s)	127, 208
BciT130I	CCWGG	2 cut(s)	152, 315
BfaI	CTAG	3 cut(s)	95, 174, 179
BfmI	CTRYAG	2 cut(s)	143, 219
BfoI	RGCGCY	1 cut(s)	290
BisI	GCNGC	3 cut(s)	6, 219, 228
BlsI	GCNGC	3 cut(s)	7, 220, 229
Bme1390I	CCNGG	2 cut(s)	152, 315
Bme18I	GGWCC	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	37, 319
BmrFI	CCNGG	2 cut(s)	152, 315
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	5
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
Bsa29I	ATCGAT	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	134, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	152, 315
BseCI	ATCGAT	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	134, 198
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	17, 205, 214
BshFI	GGCC	1 cut(s)	313
BshVI	ATCGAT	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	259, 278
BspANI	GGCC	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	37, 319
BspMAI	CTGCAG	2 cut(s)	147, 223
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	134, 198
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	152, 315
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 215, 224, 227, 284
BstNI	CCWGG	2 cut(s)	152, 315
BstSCI	CCNGG	2 cut(s)	150, 313
BstSFI	CTRYAG	2 cut(s)	143, 219
BstV1I	GCAGC	3 cut(s)	17, 205, 214
BstV2I	GAAGAC	1 cut(s)	5
Bsu15I	ATCGAT	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	313
BsuTUI	ATCGAT	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	296, 321
CaiI	CAGNNNCTG	2 cut(s)	151, 227
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	49
CviAII	CATG	2 cut(s)	159, 268
CviJI	RGCY	8 cut(s)	38, 100, 150, 203, 218, 251, 313, 339
CviKI_1	RGCY	8 cut(s)	38, 100, 150, 203, 218, 251, 313, 339
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	317
Eco47III	AGCGCT	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	150, 313
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	162, 271
FaiI	YATR	3 cut(s)	160, 246, 269
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	158, 267
Fnu4HI	GCNGC	3 cut(s)	6, 219, 228
Fsp4HI	GCNGC	3 cut(s)	6, 219, 228
FspBI	CTAG	3 cut(s)	95, 174, 179
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	3 cut(s)	6, 219, 228
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	2 cut(s)	162, 271
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	3 cut(s)	166, 187, 338
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	5 cut(s)	145, 165, 209, 221, 241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 215, 224, 227, 284
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	162, 271
HspAI	GCGC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	7 cut(s)	104, 121, 137, 164, 300, 309, 327
Lsp1109I	GCAGC	3 cut(s)	17, 205, 214
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	3 cut(s)	95, 174, 179
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	5, 123
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	3 cut(s)	176, 203, 241
MspR9I	CCNGG	2 cut(s)	152, 315
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	2 cut(s)	152, 315
MwoI	GCNNNNNNNGC	5 cut(s)	35, 215, 224, 227, 284
NlaIII	CATG	2 cut(s)	162, 271
NlaIV	GGNNCC	2 cut(s)	37, 319
NmuCI	GTSAC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	7, 220, 229
Psp6I	CCWGG	2 cut(s)	150, 313
PspGI	CCWGG	2 cut(s)	150, 313
PspN4I	GGNNCC	2 cut(s)	37, 319
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	2 cut(s)	147, 223
PstNI	CAGNNNCTG	2 cut(s)	151, 227
SatI	GCNGC	3 cut(s)	6, 219, 228
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	152, 315
SetI	ASST	3 cut(s)	13, 102, 341
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	2 cut(s)	143, 219
SinI	GGWCC	1 cut(s)	317
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	2 cut(s)	259, 278
SspMI	CTAG	3 cut(s)	95, 174, 179
StyD4I	CCNGG	2 cut(s)	150, 313
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	329
TscAI	CASTG	2 cut(s)	303, 328
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	5, 218, 227
Tsp45I	GTSAC	1 cut(s)	154
TspRI	CASTG	2 cut(s)	303, 328
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	3 cut(s)	95, 174, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.