Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009883.1

Orthogroup ID

OG0018732

Physical Location & Seq

Genomic Coordinates Reverse (-)

8584 .. 9281

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009883.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgtgtgacagatatgcgatgactggacagttgaatgccaaaagtgatgtttacagttttggtgttgtcctgctagagcttttgaccggaagaaaacctgttgatcatacattaccacggggacagcagagcctagtgacatgggctacaccaaaacttagtgaagacaaagttaggcagtgtgttgatgcaagactgggaggagaattcccccccaaggctgttgcgaagatggctgcagttgctgccttgtgtgtgcaatatgaggctgatttccgcccaaacatgagcattgtggtcaaagccctacaaccactgctaaatgctcggactggacctactggtgaatcaccaagcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

120

Amino Acids

13.0

Weight (kDa)

8.88

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62220
pyrus_communis	pycom13g12270 pycom16g12110
rosa_chinensis	RchiOBHm_Chr3g0487491
rosa_laevigata	RLG00000003754 RLG00000023002
rosa_multiflora	Rmu_co8428993.1_g000001 Rmu_sc0009883.1_g000004
rosa_samantha	Rh1CG082500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	79, 357
AluI	AGCT	2 cut(s)	79, 357
AlwNI	CAGNNNCTG	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	236, 245
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	342, 356
AvaII	GGWCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	223, 232
BccI	CCATC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	2 cut(s)	74, 134
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	237, 246
BlsI	GCNGC	2 cut(s)	238, 247
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	116, 216
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	4 cut(s)	28, 201, 337, 346
BseDI	CCNNGG	2 cut(s)	116, 216
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	4 cut(s)	28, 201, 337, 346
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	223, 232
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	241
BsrI	ACTGG	4 cut(s)	28, 201, 337, 346
BssECI	CCNNGG	2 cut(s)	116, 216
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	30, 56
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	1 cut(s)	116
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 242, 245
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	223, 232
BstV2I	GAAGAC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	32
BtsI	GCAGTG	2 cut(s)	185, 314
BtsIMutI	CAGTG	2 cut(s)	185, 314
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	335
CviAII	CATG	2 cut(s)	141, 286
CviJI	RGCY	8 cut(s)	79, 132, 146, 221, 236, 269, 305, 357
CviKI_1	RGCY	8 cut(s)	79, 132, 146, 221, 236, 269, 305, 357
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	144, 289
FaiI	YATR	5 cut(s)	15, 108, 142, 264, 287
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	140, 285
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	237, 246
Fsp4HI	GCNGC	2 cut(s)	237, 246
FspBI	CTAG	2 cut(s)	74, 134
GluI	GCNGC	2 cut(s)	237, 246
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	2 cut(s)	144, 289
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	2 cut(s)	342, 356
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	30, 56
HpyCH4V	TGCA	3 cut(s)	191, 239, 259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 242, 245
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	144, 289
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	7 cut(s)	9, 83, 100, 111, 182, 318, 327
Lsp1109I	GCAGC	2 cut(s)	223, 232
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	74, 134
MaeIII	GTNAC	2 cut(s)	5, 136
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	3 cut(s)	102, 176, 241
MluCI	AATT	1 cut(s)	206
MnlI	CCTC	2 cut(s)	194, 259
MspI	CCGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	233, 242, 245
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	144, 289
NmuCI	GTSAC	2 cut(s)	5, 136
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	238, 247
PspPI	GGNCC	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	245
SatI	GCNGC	2 cut(s)	237, 246
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	335
SetI	ASST	4 cut(s)	81, 100, 340, 359
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	335
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	2 cut(s)	74, 134
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	30, 56
TasI	AATT	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	2 cut(s)	185, 321
TseFI	GTSAC	2 cut(s)	5, 136
TseI	GCWGC	2 cut(s)	236, 245
Tsp45I	GTSAC	2 cut(s)	5, 136
TspRI	CASTG	2 cut(s)	185, 321
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	206
XspI	CTAG	2 cut(s)	74, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.