pycom13g17550

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0018529
Physical Location & Seq
Reverse (-)
13358716 .. 13359282
567 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
ATGTCATCCGTCTCTGCAATCTCCTCCTGCCTCTTAAAACGAACCATCCCGTTTTGTTCATCCGCGGCTACAACTACCCTAGCCACGACAGGAAACGGGGCTACACAGTTTCTATCCCTCAAAAAACGCATATTCCCCTCAGCATCTCATCTCCTAGCCCCTGCCCTACCCGACCCGCCCGACCAATACCCTACTAAGGCGCCGCCAGAGTTTTCTCCGTCAGTTCCAGGCCGCTACGACCAGCCTTCTACTCCTCCTGAGGTCCCTGGAATTTCCACCTCTCCGGAAGTGGACCCGACTACTACTATACCACCTGAAGTCAGACCATATCCTCCACCACTAGAGCCCGGTCCGAACCCGGGTCCGGATTTTCCGGTACCTCCCTTGAACCCGCCTCCTTTGCCCGATATTCCGCCACCTTTTCCTGATAACCCGCTCCCTAATCCCGGTATACTGCCGCCGCAGCCACCTGATGTCGTGCCTCCGCCTCCGCCGTGGCCTGAGATTATACCTCCTCCAGCTCCACCGCCACCACCAACTGGCCCGGGCGGGCCTATTGTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

19.49

Weight (kDa)

4.5

Isoelectric Point (pI)

75.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018529)

Species Orthologous Gene IDs
prunus_persica Prupe.1G023900_v2.0.a1
pyrus_communis pycom13g17550
rosa_chinensis RchiOBHm_Chr4g0388831
rosa_laevigata RLG00000010022
rosa_multiflora Rmu_sc0000697.1_g000012 Rmu_sc0016023.1_g000003
rosa_rugosa Rorug03G0320200
rosa_samantha Rh4BG018000 Rh4CG027700 Rh4DG018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 2 cut(s) 199, 376
AccB7I CCANNNNNTGG 1 cut(s) 539
AccBSI CCGCTC 1 cut(s) 436
AccI GTMKAC 1 cut(s) 451
AccII CGCG 1 cut(s) 65
AccIII TCCGGA 2 cut(s) 283, 364
AcsI RAATTY 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 5 cut(s) 196, 359, 364, 446, 539
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 2 cut(s) 226, 265
AluBI AGCT 1 cut(s) 521
AluI AGCT 1 cut(s) 521
Alw26I GTCTC 1 cut(s) 16
Ama87I CYCGRG 2 cut(s) 358, 544
Aor13HI TCCGGA 2 cut(s) 283, 364
AoxI GGCC 4 cut(s) 229, 497, 541, 551
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 6 cut(s) 262, 292, 350, 362, 542, 551
AsuC2I CCSGG 6 cut(s) 348, 359, 360, 447, 545, 546
AvaI CYCGRG 2 cut(s) 358, 544
AvaII GGWCC 4 cut(s) 262, 292, 350, 362
AxyI CCTNAGG 1 cut(s) 258
BanI GGYRCC 2 cut(s) 199, 376
BanII GRGCYC 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 475
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 478
BciT130I CCWGG 2 cut(s) 228, 267
BcnI CCSGG 6 cut(s) 348, 359, 360, 447, 545, 546
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 4 cut(s) 80, 155, 341, 565
BfoI RGCGCY 1 cut(s) 203
BisI GCNGC 6 cut(s) 66, 203, 232, 458, 461, 464
BlsI GCNGC 6 cut(s) 67, 204, 233, 459, 462, 465
Bme1390I CCNGG 8 cut(s) 228, 267, 348, 359, 360, 447, 545, 546
Bme18I GGWCC 4 cut(s) 262, 292, 350, 362
BmeT110I CYCGRG 2 cut(s) 358, 544
BmgT120I GGNCC 6 cut(s) 262, 292, 350, 362, 542, 551
BmiI GGNNCC 5 cut(s) 201, 264, 294, 363, 378
BmrFI CCNGG 8 cut(s) 228, 267, 348, 359, 360, 447, 545, 546
BmsI GCATC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 501
Bpu10I CCTNAGC 1 cut(s) 139
BpuMI CCSGG 6 cut(s) 348, 359, 360, 447, 545, 546
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 5 cut(s) 63, 265, 358, 494, 544
BsaWI WCCGGW 3 cut(s) 283, 364, 373
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 359, 364, 446, 539
Bse1I ACTGG 1 cut(s) 544
Bse21I CCTNAGG 1 cut(s) 258
BseAI TCCGGA 2 cut(s) 283, 364
BseBI CCWGG 2 cut(s) 228, 267
BseDI CCNNGG 5 cut(s) 63, 265, 358, 494, 544
BseGI GGATG 3 cut(s) 5, 45, 59
BseLI CCNNNNNNNGG 5 cut(s) 196, 359, 364, 446, 539
BseMII CTCAG 3 cut(s) 153, 249, 492
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 3 cut(s) 13, 243, 504
BseXI GCAGC 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 4 cut(s) 231, 499, 543, 553
BshNI GGYRCC 2 cut(s) 199, 376
BsiHKCI CYCGRG 2 cut(s) 358, 544
BsiSI CCGG 7 cut(s) 284, 348, 359, 365, 374, 447, 545
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 5 cut(s) 196, 359, 364, 446, 539
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 4 cut(s) 231, 499, 543, 553
BsoBI CYCGRG 2 cut(s) 358, 544
Bsp1286I GDGCHC 1 cut(s) 348
Bsp13I TCCGGA 2 cut(s) 283, 364
BspANI GGCC 4 cut(s) 231, 499, 543, 553
BspCNI CTCAG 3 cut(s) 152, 250, 493
BspEI TCCGGA 2 cut(s) 283, 364
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 5 cut(s) 201, 264, 294, 363, 378
BspT107I GGYRCC 2 cut(s) 199, 376
BsrBI CCGCTC 1 cut(s) 436
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 5 cut(s) 63, 265, 358, 494, 544
BssNAI GTATAC 1 cut(s) 452
BssNI GRCGYC 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 228, 267
Bst4CI ACNGT 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 4 cut(s) 139, 195, 258, 501
BstDSI CCRYGG 2 cut(s) 63, 494
BstF5I GGATG 3 cut(s) 5, 45, 59
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 400, 463
BstNI CCWGG 2 cut(s) 228, 267
BstSCI CCNGG 8 cut(s) 226, 265, 346, 357, 358, 445, 543, 544
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 452
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 4 cut(s) 231, 499, 543, 553
BtgI CCRYGG 2 cut(s) 63, 494
BtsCI GGATG 3 cut(s) 5, 45, 59
Cac8I GCNNGC 1 cut(s) 551
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 6 cut(s) 262, 292, 350, 362, 542, 551
Cfr42I CCGCGG 1 cut(s) 66
Cfr9I CCCGGG 2 cut(s) 358, 544
CpoI CGGWCCG 1 cut(s) 350
Csp6I GTAC 1 cut(s) 377
CspI CGGWCCG 1 cut(s) 350
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 4 cut(s) 139, 195, 258, 501
DinI GGCGCC 1 cut(s) 201
EciI GGCGGA 3 cut(s) 402, 474, 480
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 4 cut(s) 262, 292, 350, 362
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 258
Eco88I CYCGRG 2 cut(s) 358, 544
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 226, 265
EcoT38I GRGCYC 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 201
EheI GGCGCC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 16
FaiI YATR 5 cut(s) 131, 308, 328, 452, 509
FaqI GGGAC 1 cut(s) 248
FauI CCCGC 4 cut(s) 183, 399, 441, 542
FblI GTMKAC 1 cut(s) 451
Fnu4HI GCNGC 6 cut(s) 66, 203, 232, 458, 461, 464
FokI GGATG 2 cut(s) 32, 46
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 6 cut(s) 66, 203, 232, 458, 461, 464
FspBI CTAG 4 cut(s) 80, 155, 341, 565
GlaI GCGC 1 cut(s) 201
GluI GCNGC 6 cut(s) 66, 203, 232, 458, 461, 464
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 4 cut(s) 231, 499, 543, 553
HapII CCGG 7 cut(s) 284, 348, 359, 365, 374, 447, 545
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 200
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HpaII CCGG 7 cut(s) 284, 348, 359, 365, 374, 447, 545
Hpy166II GTNNAC 2 cut(s) 292, 452
Hpy188I TCNGA 2 cut(s) 323, 354
Hpy188III TCNNGA 4 cut(s) 257, 284, 365, 425
Hpy8I GTNNAC 2 cut(s) 292, 452
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 463
HpyF3I CTNAG 4 cut(s) 139, 195, 258, 501
Hsp92I GRCGYC 1 cut(s) 200
HspAI GCGC 1 cut(s) 200
KasI GGCGCC 1 cut(s) 199
Kpn2I TCCGGA 2 cut(s) 283, 364
KpnI GGTACC 1 cut(s) 380
KspI CCGCGG 1 cut(s) 66
LmnI GCTCC 2 cut(s) 441, 526
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 1 cut(s) 152
MaeI CTAG 4 cut(s) 80, 155, 341, 565
MbiI CCGCTC 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 270
Mly113I GGCGCC 1 cut(s) 200
MroI TCCGGA 2 cut(s) 283, 364
MseI TTAA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 7 cut(s) 284, 348, 359, 365, 374, 447, 545
MspR9I CCNGG 8 cut(s) 228, 267, 348, 359, 360, 447, 545, 546
MvaI CCWGG 2 cut(s) 228, 267
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 400, 463
NarI GGCGCC 1 cut(s) 200
NciI CCSGG 6 cut(s) 348, 359, 360, 447, 545, 546
NlaIV GGNNCC 5 cut(s) 201, 264, 294, 363, 378
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 6 cut(s) 67, 204, 233, 459, 462, 465
PluTI GGCGCC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 226, 265
PspGI CCWGG 2 cut(s) 226, 265
PspN4I GGNNCC 5 cut(s) 201, 264, 294, 363, 378
PspPI GGNCC 6 cut(s) 262, 292, 350, 362, 542, 551
PspPPI RGGWCCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
Rsr2I CGGWCCG 1 cut(s) 350
RsrII CGGWCCG 1 cut(s) 350
SacII CCGCGG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 6 cut(s) 66, 203, 232, 458, 461, 464
Sau96I GGNCC 6 cut(s) 262, 292, 350, 362, 542, 551
ScrFI CCNGG 8 cut(s) 228, 267, 348, 359, 360, 447, 545, 546
SduI GDGCHC 1 cut(s) 348
SetI ASST 8 cut(s) 264, 281, 316, 382, 421, 472, 514, 523
SfaNI GCATC 1 cut(s) 152
SfoI GGCGCC 1 cut(s) 201
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SinI GGWCC 4 cut(s) 262, 292, 350, 362
SmaI CCCGGG 2 cut(s) 360, 546
SrfI GCCCGGGC 1 cut(s) 546
Sse9I AATT 1 cut(s) 270
SspDI GGCGCC 1 cut(s) 199
SspMI CTAG 4 cut(s) 80, 155, 341, 565
StyD4I CCNGG 8 cut(s) 226, 265, 346, 357, 358, 445, 543, 544
TaaI ACNGT 1 cut(s) 108
TasI AATT 1 cut(s) 270
TauI GCSGC 5 cut(s) 68, 205, 234, 460, 463
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseI GCWGC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 207
TspMI CCCGGG 2 cut(s) 358, 544
Van91I CCANNNNNTGG 1 cut(s) 539
VpaK11BI GGWCC 4 cut(s) 262, 292, 350, 362
XapI RAATTY 1 cut(s) 270
XmaI CCCGGG 2 cut(s) 358, 544
XmiI GTMKAC 1 cut(s) 451
XspI CTAG 4 cut(s) 80, 155, 341, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.