pycom13g18400

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012397
Physical Location & Seq
Forward (+)
14514494 .. 14515563
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGAGGGATTTTCCTGGGACTCCTGGGACTTTGACTGGCCTTCTTCTCAGGATTTCCCAATGCGTCTTTGCTGCCGGGTCCATTGCTTCCATGGCCACGACTGCCAGCTTCTTCAATTTCACTGCTTTCTGCTACCTGATTGCTTCAATGGGTCTGCAACTGATCTGGAGTTTGGTACTTGCATTGCTTGATGCATATTCCTTGGTGAAAAAGAAGGTCCTCCACAACCCTGTATTGGTTAGCCTCTTTGTTGTTGGAGACTGGGTTACAGCAACATTGTCTCTTGCAGCAGCTTCGGCCTCGGCGGGTGTAACCGTGTTGTACTTTAGTGATCTGAATGACTGCAATTACGGAAGGGAATGCCAAAAATACCAAATGGCAGTTGGTTTGGCATACCTGAGCTGGGTAACAGTTGCAATTTCTTCTCTGATTATGCTCTGGCTATTGGCAGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

153

Amino Acids

16.32

Weight (kDa)

7.59

Isoelectric Point (pI)

19.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 136 2.5e-27 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23200
fragaria_vesca FvH4_4g03370 FvH4_4g03370
malus_domestica MD13G1212200.v1.1
prunus_persica Prupe.1G037100_v2.0.a1 Prupe.1G037100_v2.0.a1
pyrus_communis pycom13g18400
rosa_chinensis RchiOBHm_Chr4g0392361
rosa_laevigata RLG00000009817
rosa_multiflora Rmu_sc0001800.1_g000025
rosa_roxburghii Rroxscaffold_5G00337540
rosa_rugosa Rorug03G0338500 Rorug03G0338600 Rorug03G0338600
rosa_samantha Rh4AG042100 Rh4BG037000 Rh4CG044900 Rh4DG039100
rosa_wichuraiana Rw4G003280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 2 cut(s) 177, 323
AfiI CCNNNNNNNGG 2 cut(s) 235, 403
AgsI TTSAA 2 cut(s) 115, 147
AjnI CCWGG 2 cut(s) 13, 22
AluBI AGCT 3 cut(s) 108, 293, 402
AluI AGCT 3 cut(s) 108, 293, 402
Alw26I GTCTC 2 cut(s) 252, 285
AoxI GGCC 3 cut(s) 37, 93, 297
ApeKI GCWGC 4 cut(s) 71, 287, 290, 449
AspS9I GGNCC 2 cut(s) 78, 217
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 2 cut(s) 78, 217
BalI TGGCCA 1 cut(s) 95
BbvI GCAGC 3 cut(s) 58, 299, 302
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BciT130I CCWGG 2 cut(s) 15, 24
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 252, 285
BisI GCNGC 4 cut(s) 72, 288, 291, 450
BlsI GCNGC 4 cut(s) 73, 289, 292, 451
Bme1390I CCNGG 3 cut(s) 15, 24, 76
Bme18I GGWCC 2 cut(s) 78, 217
BmgT120I GGNCC 2 cut(s) 78, 217
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 3 cut(s) 15, 24, 76
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 76
BsaJI CCNNGG 5 cut(s) 14, 23, 90, 201, 300
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 403
Bse1I ACTGG 2 cut(s) 40, 266
Bse3DI GCAATG 2 cut(s) 81, 182
BseBI CCWGG 2 cut(s) 15, 24
BseDI CCNNGG 5 cut(s) 14, 23, 90, 201, 300
BseLI CCNNNNNNNGG 2 cut(s) 235, 403
BseMI GCAATG 2 cut(s) 81, 182
BseMII CTCAG 2 cut(s) 61, 389
BseNI ACTGG 2 cut(s) 40, 266
BseXI GCAGC 3 cut(s) 58, 299, 302
BseYI CCCAGC 1 cut(s) 402
BshFI GGCC 3 cut(s) 39, 95, 299
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 31, 40
BslI CCNNNNNNNGG 2 cut(s) 235, 403
BsmAI GTCTC 2 cut(s) 252, 285
BsmFI GGGAC 2 cut(s) 31, 40
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 3 cut(s) 39, 95, 299
Bsp143I GATC 2 cut(s) 162, 331
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 1 cut(s) 305
BspANI GGCC 3 cut(s) 39, 95, 299
BspCNI CTCAG 2 cut(s) 60, 390
BspLI GGNNCC 1 cut(s) 79
BsrDI GCAATG 2 cut(s) 81, 182
BsrI ACTGG 2 cut(s) 40, 266
BssECI CCNNGG 5 cut(s) 14, 23, 90, 201, 300
BssMI GATC 2 cut(s) 162, 331
BssT1I CCWWGG 2 cut(s) 90, 201
Bst2UI CCWGG 2 cut(s) 15, 24
Bst4CI ACNGT 2 cut(s) 316, 412
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 47, 398
BstDSI CCRYGG 1 cut(s) 90
BstKTI GATC 2 cut(s) 165, 334
BstMAI GTCTC 2 cut(s) 252, 285
BstMBI GATC 2 cut(s) 162, 331
BstMWI GCNNNNNNNGC 3 cut(s) 92, 101, 296
BstNI CCWGG 2 cut(s) 15, 24
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 3 cut(s) 13, 22, 74
BstV1I GCAGC 3 cut(s) 58, 299, 302
BsuRI GGCC 3 cut(s) 39, 95, 299
BtgI CCRYGG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 78, 217
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 176, 322
CviAII CATG 2 cut(s) 91, 453
CviJI RGCY 8 cut(s) 39, 95, 108, 243, 293, 299, 402, 442
CviKI_1 RGCY 8 cut(s) 39, 95, 108, 243, 293, 299, 402, 442
CviQI GTAC 2 cut(s) 176, 322
DdeI CTNAG 2 cut(s) 47, 398
DpnI GATC 2 cut(s) 164, 333
DpnII GATC 2 cut(s) 162, 331
EaeI YGGCCR 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 90, 201
Eco47I GGWCC 2 cut(s) 78, 217
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 13, 22
EcoT14I CCWWGG 2 cut(s) 90, 201
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 90, 201
FaeI CATG 2 cut(s) 94, 456
FaiI YATR 5 cut(s) 92, 196, 394, 434, 454
FaqI GGGAC 2 cut(s) 31, 40
FatI CATG 2 cut(s) 90, 452
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 4 cut(s) 72, 288, 291, 450
Fsp4HI GCNGC 4 cut(s) 72, 288, 291, 450
GluI GCNGC 4 cut(s) 72, 288, 291, 450
GsaI CCCAGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 3 cut(s) 39, 95, 299
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 94, 456
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 336, 429
Hpy188III TCNNGA 2 cut(s) 49, 166
HpyAV CCTTC 3 cut(s) 50, 208, 348
HpyCH4III ACNGT 2 cut(s) 316, 412
HpyCH4V TGCA 6 cut(s) 157, 182, 194, 287, 345, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 101, 296
HpyF3I CTNAG 2 cut(s) 47, 398
Hsp92II CATG 2 cut(s) 94, 456
Kzo9I GATC 2 cut(s) 162, 331
Lsp1109I GCAGC 3 cut(s) 58, 299, 302
LweI GCATC 1 cut(s) 181
MaeIII GTNAC 3 cut(s) 265, 310, 406
MalI GATC 2 cut(s) 164, 333
MboI GATC 2 cut(s) 162, 331
MboII GAAGA 3 cut(s) 35, 103, 414
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 3 cut(s) 115, 346, 417
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 3 cut(s) 230, 254, 310
Mox20I TGGCCA 1 cut(s) 95
Mph1103I ATGCAT 1 cut(s) 196
MscI TGGCCA 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 95
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 3 cut(s) 15, 24, 76
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 2 cut(s) 15, 24
MwoI GCNNNNNNNGC 3 cut(s) 92, 101, 296
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 90
NdeII GATC 2 cut(s) 162, 331
NlaIII CATG 2 cut(s) 94, 456
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 1 cut(s) 456
PctI GAATGC 1 cut(s) 365
PkrI GCNGC 4 cut(s) 73, 289, 292, 451
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 13, 22
PspFI CCCAGC 1 cut(s) 402
PspGI CCWGG 2 cut(s) 13, 22
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 78, 217
PspPPI RGGWCCY 1 cut(s) 217
RsaI GTAC 2 cut(s) 177, 323
RsaNI GTAC 2 cut(s) 176, 322
SatI GCNGC 4 cut(s) 72, 288, 291, 450
Sau3AI GATC 2 cut(s) 162, 331
Sau96I GGNCC 2 cut(s) 78, 217
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 15, 24, 76
SetI ASST 6 cut(s) 110, 138, 219, 295, 399, 404
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 2 cut(s) 78, 217
Sse9I AATT 3 cut(s) 115, 346, 417
SsiI CCGC 1 cut(s) 305
StyD4I CCNGG 3 cut(s) 13, 22, 74
StyI CCWWGG 2 cut(s) 90, 201
TaaI ACNGT 2 cut(s) 316, 412
TasI AATT 3 cut(s) 115, 346, 417
TatI WGTACW 1 cut(s) 321
TscAI CASTG 1 cut(s) 127
TseI GCWGC 4 cut(s) 71, 287, 290, 449
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 2 cut(s) 78, 217
XceI RCATGY 1 cut(s) 456
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 380
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.