pycom13g20090

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012901
Physical Location & Seq
Reverse (-)
16094714 .. 16095139
426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGAAGACCCTCACTAGCATTCTGCTTCTTTGTGTTCTTGCATTCTTCGTAATCTGCATGTCAATAGAACCCCATAACTTCTACGGTACCGAATACAACGTTCGAGTCATCAACGGCTTCACGAACAACTCGTCCCTGCCTTTGGTGATTTGGTGTGCATCACAGCACAGTGATCTTGGTGGACGTGCACTTCAGGAGCATGAAGATTTTAGCTGGAGCCTGAGGACCAATCTCTGGGGCACTACTGACCGTTTCAAATGTACCATGAAATGGGACCGAATAAGGAGGAGTTTTGAGGCGTTTAAGGCCCCGAGGGATTTTCAGAGGTGCGGTCCTTTTAGGAAGTGTTCTTGGTTAGTCAGAGAAGACGGGTTTTATTTCAGCAATGATGAAGTAAGTTGGAAAAAAGATTTTTCATGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.7

Weight (kDa)

8.58

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 33 - 140 1.3e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24060
fragaria_vesca FvH4_4g05670
malus_domestica MD13G1228600.v1.1 MD16G1234100.v1.1
prunus_persica Prupe.1G058400_v2.0.a1
pyrus_communis pycom13g20090
rosa_chinensis RchiOBHm_Chr4g0396841
rosa_laevigata RLG00000009500
rosa_multiflora Rmu_sc0000487.1_g000063
rosa_roxburghii Rroxscaffold_5G00341700
rosa_rugosa Rorug03G0347300
rosa_samantha Rh4AG072200 Rh4AG073000 Rh4AG074600 Rh4BG070200 Rh4CG078600 Rh4DG067900
rosa_wichuraiana Rw4G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 2 cut(s) 234, 270
AciI CCGC 1 cut(s) 330
AclI AACGTT 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 88, 262
AfiI CCNNNNNNNGG 3 cut(s) 142, 234, 270
AgsI TTSAA 1 cut(s) 256
AjiI CACGTC 1 cut(s) 185
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw21I GWGCWC 1 cut(s) 190
Alw44I GTGCAC 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 1 cut(s) 306
ApaLI GTGCAC 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
Asp718I GGTACC 1 cut(s) 86
AspS9I GGNCC 4 cut(s) 225, 274, 307, 332
AsuHPI GGTGA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 3 cut(s) 225, 274, 332
AxyI CCTNAGG 1 cut(s) 221
BaeGI GKGCMC 2 cut(s) 190, 242
BanI GGYRCC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 11, 372
Bbv12I GWGCWC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 130
BfaI CTAG 1 cut(s) 15
Bme18I GGWCC 3 cut(s) 225, 274, 332
BmeT110I CYCGRG 1 cut(s) 310
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 4 cut(s) 225, 274, 307, 332
BmiI GGNNCC 4 cut(s) 88, 218, 275, 309
BmsI GCATC 1 cut(s) 167
BpiI GAAGAC 2 cut(s) 11, 372
BpmI CTGGAG 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 234, 270
Bse21I CCTNAGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 311
BseLI CCNNNNNNNGG 3 cut(s) 142, 234, 270
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 301
BseSI GKGCMC 2 cut(s) 190, 242
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 310
BslFI GGGAC 2 cut(s) 118, 287
BslI CCNNNNNNNGG 3 cut(s) 142, 234, 270
BsmFI GGGAC 2 cut(s) 118, 287
BsmI GAATGC 2 cut(s) 18, 41
BsnI GGCC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 190, 242
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 88, 218, 275, 309
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 172
Bst4CI ACNGT 3 cut(s) 86, 170, 251
BstDEI CTNAG 1 cut(s) 221
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 61
BstSLI GKGCMC 2 cut(s) 190, 242
BstV2I GAAGAC 2 cut(s) 11, 372
Bsu36I CCTNAGG 1 cut(s) 221
BsuRI GGCC 1 cut(s) 308
BtrI CACGTC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 175
Cfr13I GGNCC 4 cut(s) 225, 274, 307, 332
Csp6I GTAC 2 cut(s) 87, 261
CviAII CATG 4 cut(s) 58, 200, 265, 417
CviJI RGCY 4 cut(s) 117, 213, 219, 308
CviKI_1 RGCY 4 cut(s) 117, 213, 219, 308
CviQI GTAC 2 cut(s) 87, 261
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco47I GGWCC 3 cut(s) 225, 274, 332
Eco57I CTGAAG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 307
FaeI CATG 4 cut(s) 61, 203, 268, 420
FaiI YATR 5 cut(s) 59, 75, 201, 266, 418
FaqI GGGAC 2 cut(s) 118, 287
FatI CATG 4 cut(s) 57, 199, 264, 416
FspBI CTAG 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 1 cut(s) 308
Hin1II CATG 4 cut(s) 61, 203, 268, 420
HinfI GANTC 1 cut(s) 105
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 182, 188
Hpy188I TCNGA 2 cut(s) 324, 362
Hpy188III TCNNGA 2 cut(s) 121, 194
Hpy8I GTNNAC 2 cut(s) 182, 188
HpyCH4III ACNGT 3 cut(s) 86, 170, 251
HpyCH4IV ACGT 2 cut(s) 99, 184
HpyCH4V TGCA 4 cut(s) 41, 57, 158, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 99, 184
Hsp92II CATG 4 cut(s) 61, 203, 268, 420
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 196, 216
LpnPI CCDG 5 cut(s) 149, 179, 199, 220, 233
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 99, 184
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 4 cut(s) 16, 37, 215, 377
MhlI GDGCHC 2 cut(s) 190, 242
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 6 cut(s) 20, 216, 279, 289, 306, 318
MseI TTAA 1 cut(s) 303
Mva1269I GAATGC 2 cut(s) 18, 41
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 172
NlaIII CATG 4 cut(s) 61, 203, 268, 420
NlaIV GGNNCC 4 cut(s) 88, 218, 275, 309
NspI RCATGY 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 2 cut(s) 18, 41
PflMI CCANNNNNTGG 2 cut(s) 234, 270
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp1406I AACGTT 1 cut(s) 99
PspN4I GGNNCC 4 cut(s) 88, 218, 275, 309
PspPI GGNCC 4 cut(s) 225, 274, 307, 332
RsaI GTAC 2 cut(s) 88, 262
RsaNI GTAC 2 cut(s) 87, 261
SaqAI TTAA 1 cut(s) 303
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 4 cut(s) 225, 274, 307, 332
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 2 cut(s) 190, 242
SetI ASST 4 cut(s) 102, 187, 215, 329
SfaNI GCATC 1 cut(s) 167
SinI GGWCC 3 cut(s) 225, 274, 332
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 3 cut(s) 86, 170, 251
TaiI ACGT 2 cut(s) 102, 187
TaqI TCGA 1 cut(s) 103
TaqII GACCGA 1 cut(s) 291
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 5 cut(s) 17, 216, 281, 405, 405
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 2 cut(s) 234, 270
VneI GTGCAC 1 cut(s) 186
VpaK11BI GGWCC 3 cut(s) 225, 274, 332
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.