Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018934

Physical Location & Seq

Genomic Coordinates Reverse (-)

20547227 .. 20547502

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATGCATGGAACTCTTTTAAAACCTGGATTTCCAATAGGTGAGGAAACAAAAAGTCATATATTACTCACCACTCGCATGATGGACGTTGCTAAAAGTGCTGGAGAAAATGGTTTCGTTCATAAATCTCGTCCGCTAAATGATAAGGAAAGATGGGAACTGTTCGAGAAGATAGCAATCTTCGGAAGAGATCAAGCAAGTATGTTTCTCACTTCTCATTCAACTCTACTACCATTAATTGCTTTTTTTGTTTATCTGTCAAGCCTAATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

92

Amino Acids

10.32

Weight (kDa)

9.16

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	15 - 60	1.6e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018934)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g22740
rosa_chinensis	RchiOBHm_Chr1g0345541
rosa_multiflora	Rmu_sc0001349.1_g000005 Rmu_sc0003762.1_g000016 Rmu_sc0005950.1_g000012 Rmu_sc0005950.1_g000014 Rmu_sc0007581.1_g000010 Rmu_sc0038146.1_g000001
rosa_samantha	Rh1CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	25
AseI	ATTAAT	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	53, 61
BccI	CCATC	2 cut(s)	76, 147
BciT130I	CCWGG	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	134
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
CviAII	CATG	2 cut(s)	8, 79
CviJI	RGCY	1 cut(s)	264
CviKI_1	RGCY	1 cut(s)	264
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	9
FaeI	CATG	2 cut(s)	11, 82
FaiI	YATR	6 cut(s)	9, 60, 62, 80, 123, 203
FatI	CATG	2 cut(s)	7, 78
GsuI	CTGGAG	1 cut(s)	123
Hin1II	CATG	2 cut(s)	11, 82
HphI	GGTGA	2 cut(s)	53, 61
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	11, 82
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	12, 39, 87
MaeII	ACGT	1 cut(s)	87
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	172, 181, 198
MluCI	AATT	1 cut(s)	237
MnlI	CCTC	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	9
MseI	TTAA	2 cut(s)	20, 236
MslI	CAYNNNNRTG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	11, 82
NsiI	ATGCAT	1 cut(s)	9
PshBI	ATTAAT	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	20, 236
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	3 cut(s)	28, 43, 90
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	20, 236
Tru9I	TTAA	2 cut(s)	20, 236
TspDTI	ATGAA	1 cut(s)	110
VspI	ATTAAT	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.