Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038146.1

Orthogroup ID

OG0018934

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 745

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038146.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

tttgcaaagttataacatcaggcaaataagtgggggtgatggtgtcggccgtgtcgcttcttcttttaagaggcaactagatcgacggctaacttatgctcatgaagttgaaagtcatactgttggcttagaggaaaacacagatatactagtgaaggagttggtgagagaaggaaagcgtcaccgtgttgtttctatttgggggatgggcggctccggaaaaaccactcttgcaaaacaggtttttcttcaaaatgaagttaagcgtcattttgattgttttgcttgggtctgtatatctcaacaatgggaaggaaaggatgtattggaagatattataattaaactcacttccccaacggcagataaaaggagagaaatttccaaaatgaaaaaggatgaaatagcaagggaggtctttagtatccaacgagaaaagagatgtctggtggtccttgatgacatatggactcaagaggcttggcattcgataaaagctggattcccaaccaatgaggaaacagagagccggatattactcactactcgcaagaaagaagttgccttgcttgcttccaaaaatgatcatctccaccaacctcgaccactagatgacaaccagagctgggaactgtttgaaaagatagcgatgtgtggaagcgacaaaacaggtatttttgttttcagccaattaatgcatatttatctgtacttttctagcctcgggaagttttgcattccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

247

Amino Acids

28.48

Weight (kDa)

8.54

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018934)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g22740
rosa_chinensis	RchiOBHm_Chr1g0345541
rosa_multiflora	Rmu_sc0001349.1_g000005 Rmu_sc0003762.1_g000016 Rmu_sc0005950.1_g000012 Rmu_sc0005950.1_g000014 Rmu_sc0007581.1_g000010 Rmu_sc0038146.1_g000001
rosa_samantha	Rh1CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	13, 339
AccIII	TCCGGA	1 cut(s)	216
AciI	CCGC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	3 cut(s)	111, 252, 639
AhlI	ACTAGT	1 cut(s)	149
AluBI	AGCT	2 cut(s)	498, 625
AluI	AGCT	2 cut(s)	498, 625
Ama87I	CYCGRG	1 cut(s)	723
Aor13HI	TCCGGA	1 cut(s)	216
AoxI	GGCC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	379
AseI	ATTAAT	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	48, 174, 176
AvaI	CYCGRG	1 cut(s)	723
AvaII	GGWCC	1 cut(s)	452
BccI	CCATC	2 cut(s)	33, 200
BceAI	ACGGC	3 cut(s)	34, 102, 376
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	584
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	4 cut(s)	78, 150, 609, 718
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	722
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
BseAI	TCCGGA	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	722
BseGI	GGATG	3 cut(s)	211, 326, 404
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseX3I	CGGCCG	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	625
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	217, 530
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmI	GAATGC	2 cut(s)	485, 736
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	723
Bsp13I	TCCGGA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	80, 584
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	722
BssMI	GATC	2 cut(s)	80, 584
Bst4CI	ACNGT	3 cut(s)	122, 186, 634
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	3 cut(s)	211, 326, 404
BstKTI	GATC	2 cut(s)	83, 587
BstMBI	GATC	2 cut(s)	80, 584
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstZI	CGGCCG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	3 cut(s)	211, 326, 404
Cac8I	GCNNGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	2 cut(s)	168, 255
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	1 cut(s)	102
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	82, 586
DpnII	GATC	2 cut(s)	80, 584
EaeI	YGGCCR	1 cut(s)	47
EagI	CGGCCG	1 cut(s)	47
EclXI	CGGCCG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	452
Eco52I	CGGCCG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	723
EcoT22I	ATGCAT	1 cut(s)	700
FaeI	CATG	1 cut(s)	105
FatI	CATG	1 cut(s)	101
FauNDI	CATATG	1 cut(s)	465
FbaI	TGATCA	1 cut(s)	584
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	3 cut(s)	218, 333, 411
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	4 cut(s)	78, 150, 609, 718
GluI	GCNGC	1 cut(s)	212
GsaI	CCCAGC	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	2 cut(s)	217, 530
HgaI	GACGC	2 cut(s)	168, 255
Hin1II	CATG	1 cut(s)	105
HinfI	GANTC	2 cut(s)	470, 502
HpaII	CCGG	2 cut(s)	217, 530
HphI	GGTGA	3 cut(s)	48, 174, 176
Hpy188III	TCNNGA	4 cut(s)	102, 217, 474, 725
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	149, 165, 306
HpyCH4III	ACNGT	3 cut(s)	122, 186, 634
HpyCH4V	TGCA	4 cut(s)	5, 234, 698, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	584
Kzo9I	GATC	2 cut(s)	80, 584
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	9 cut(s)	5, 225, 230, 432, 484, 543, 611, 633, 655
MaeI	CTAG	4 cut(s)	78, 150, 609, 718
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	2 cut(s)	82, 586
MboI	GATC	2 cut(s)	80, 584
MboII	GAAGA	3 cut(s)	52, 240, 342
MluCI	AATT	3 cut(s)	340, 379, 690
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	64, 125, 407, 470, 509, 610, 732
Mph1103I	ATGCAT	1 cut(s)	700
MroI	TCCGGA	1 cut(s)	216
MseI	TTAA	4 cut(s)	67, 262, 343, 693
MspI	CCGG	2 cut(s)	217, 530
Mva1269I	GAATGC	2 cut(s)	485, 736
MwoI	GCNNNNNNNGC	1 cut(s)	570
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	2 cut(s)	80, 584
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	700
PagI	TCATGA	1 cut(s)	101
PctI	GAATGC	2 cut(s)	485, 736
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PshBI	ATTAAT	1 cut(s)	693
PsiI	TTATAA	2 cut(s)	13, 339
PspFI	CCCAGC	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
SaqAI	TTAA	4 cut(s)	67, 262, 343, 693
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	80, 584
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	464
SetI	ASST	6 cut(s)	244, 418, 500, 602, 627, 674
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	3 cut(s)	340, 379, 690
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	4 cut(s)	78, 150, 609, 718
TaaI	ACNGT	3 cut(s)	122, 186, 634
TaqI	TCGA	3 cut(s)	83, 489, 602
TasI	AATT	3 cut(s)	340, 379, 690
TatI	WGTACW	1 cut(s)	709
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	4 cut(s)	67, 262, 343, 693
Tru9I	TTAA	4 cut(s)	67, 262, 343, 693
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	4 cut(s)	118, 271, 405, 415
VpaK11BI	GGWCC	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	1 cut(s)	379
XspI	CTAG	4 cut(s)	78, 150, 609, 718
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.