Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018934

Physical Location & Seq

Genomic Coordinates Forward (+)

37864349 .. 37864777

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAAATGGATGAAATAGCAAAGGTGGTCTGTAGTATCCAACGAGAAAAGACATGTCTGGTGATCCTTGATGGCATATGGACTCAAGATGCTTGGAATTCGATAAAAGATGGATTCCCAATTAATGAGGAAACAGAGAGCCGGATATTACTCACTACTCGCAGGAAAGAAGTAGCCTTGCTGCTTGCATCCAGAAATGACTATCTCCACCAACCACGATTAGATGAGAAGCAAAGCCAGAAACTGTTTGAAAAGATAGCGATATGTGGAAGCGACAATGCAGGTATTTTATTTTTAGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

101

Amino Acids

11.54

Weight (kDa)

5.81

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	5 - 88	1.9e-12	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018934)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g22740
rosa_chinensis	RchiOBHm_Chr1g0345541
rosa_multiflora	Rmu_sc0001349.1_g000005 Rmu_sc0003762.1_g000016 Rmu_sc0005950.1_g000012 Rmu_sc0005950.1_g000014 Rmu_sc0007581.1_g000010 Rmu_sc0038146.1_g000001
rosa_samantha	Rh1CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
AlwI	GGATC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	97
AseI	ATTAAT	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	65, 104
BciVI	GTATCC	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmsI	GCATC	2 cut(s)	79, 197
BpuEI	CTTGAG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	16, 188
BseXI	GCAGC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	58
BssMI	GATC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	16, 188
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	16, 188
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	244
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	4 cut(s)	141, 176, 237, 299
CviKI_1	RGCY	4 cut(s)	141, 176, 237, 299
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	57
FaiI	YATR	4 cut(s)	55, 77, 79, 265
FatI	CATG	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	2 cut(s)	23, 175
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	2 cut(s)	82, 114
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	86, 192
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	188, 281
Hsp92II	CATG	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	6 cut(s)	44, 148, 155, 205, 251, 267
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	79, 197
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MluCI	AATT	2 cut(s)	97, 120
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	142
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	57
NspI	RCATGY	1 cut(s)	57
PciI	ACATGT	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PscI	ACATGT	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	76
SetI	ASST	4 cut(s)	27, 286, 301, 305
SfaNI	GCATC	2 cut(s)	79, 197
SfcI	CTRYAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	97, 120
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	97, 120
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	17, 27
VspI	ATTAAT	1 cut(s)	123
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.