Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018934

Physical Location & Seq

Genomic Coordinates Forward (+)

39844313 .. 39845086

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG180400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAGAAGGATGAAATAGCAAGGGAGGTCTGTACTATCCAACGAGAAAAGAGATGTCTGGTGGTCCTTGATGACATATGGACTCAGGAGGCTTGGAATTTGATTAAAGCTGGATTCTCAATCAATGAGGAAACAGAGAGCCGGATATTACTCACTACTCGCAAGAAAGAAGTCGCCTTGCTTGCATCCAGAAATGACTGTCTCCACCAGCCTCAACCTCAAAATGATATGCAAAGCTGGGAACTGTTTGAAAAGATAGCCATCCGTGGAAGCGACAAAACAAACTCAGAAATTTATGCAAAGAAGAAAGAATTAGGAAAGAAGATGCTTATACATTGTTCAGGTCTACCATTAGCCATCAGTGTGCTCGCTGGTCTTCTTAGTAGACGAGAGACGGTTGATGAGTGGGACACATACAGTACTTGGAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

144

Amino Acids

16.67

Weight (kDa)

7.6

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	3 - 91	4.9e-17	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018934)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g22740
rosa_chinensis	RchiOBHm_Chr1g0345541
rosa_multiflora	Rmu_sc0001349.1_g000005 Rmu_sc0003762.1_g000016 Rmu_sc0005950.1_g000012 Rmu_sc0005950.1_g000014 Rmu_sc0007581.1_g000010 Rmu_sc0038146.1_g000001
rosa_samantha	Rh1CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	346, 385
AcsI	RAATTY	2 cut(s)	97, 291
AfaI	GTAC	2 cut(s)	34, 421
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	2 cut(s)	110, 237
AluI	AGCT	2 cut(s)	110, 237
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	206, 386
ApoI	RAATTY	2 cut(s)	97, 291
AspS9I	GGNCC	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	2 cut(s)	269, 365
BcoDI	GTCTC	2 cut(s)	206, 386
BmcAI	AGTACT	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmsI	GCATC	2 cut(s)	194, 315
BpiI	GAAGAC	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	3 cut(s)	16, 185, 261
BseJI	GATNNNNATC	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	98, 300
BseYI	CCCAGC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	206, 386
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	97, 299
BssECI	CCNNGG	1 cut(s)	265
Bst4CI	ACNGT	4 cut(s)	200, 246, 397, 419
BstC8I	GCNNGC	2 cut(s)	183, 369
BstDEI	CTNAG	3 cut(s)	84, 286, 380
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	3 cut(s)	16, 185, 261
BstMAI	GTCTC	2 cut(s)	206, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	16, 185, 261
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	183, 369
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	33, 420
CviJI	RGCY	7 cut(s)	92, 110, 141, 211, 237, 260, 356
CviKI_1	RGCY	7 cut(s)	92, 110, 141, 211, 237, 260, 356
CviQI	GTAC	2 cut(s)	33, 420
DdeI	CTNAG	3 cut(s)	84, 286, 380
Eco47I	GGWCC	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	386
FaiI	YATR	6 cut(s)	77, 79, 230, 297, 332, 415
FaqI	GGGAC	1 cut(s)	422
FauNDI	CATATG	1 cut(s)	77
FblI	GTMKAC	2 cut(s)	346, 385
FokI	GGATG	3 cut(s)	23, 172, 248
GsaI	CCCAGC	1 cut(s)	241
HapII	CCGG	1 cut(s)	142
HinfI	GANTC	2 cut(s)	82, 114
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	347, 386
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	2 cut(s)	86, 189
Hpy8I	GTNNAC	2 cut(s)	347, 386
HpyCH4III	ACNGT	4 cut(s)	200, 246, 397, 419
HpyCH4V	TGCA	3 cut(s)	185, 232, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	3 cut(s)	84, 286, 380
LpnPI	CCDG	9 cut(s)	44, 71, 96, 155, 202, 221, 223, 327, 357
LweI	GCATC	2 cut(s)	194, 315
MboII	GAAGA	4 cut(s)	16, 316, 334, 368
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	97, 291, 311
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	5 cut(s)	19, 82, 121, 222, 228
MseI	TTAA	2 cut(s)	105, 433
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeI	CATATG	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	2 cut(s)	34, 421
RsaNI	GTAC	2 cut(s)	33, 420
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	105, 433
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	5 cut(s)	30, 112, 220, 239, 346
SfaNI	GCATC	2 cut(s)	194, 315
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	97, 291, 311
TaaI	ACNGT	4 cut(s)	200, 246, 397, 419
TasI	AATT	3 cut(s)	97, 291, 311
TatI	WGTACW	2 cut(s)	32, 419
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	105, 433
Tru9I	TTAA	2 cut(s)	105, 433
TscAI	CASTG	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	17, 27
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	97, 291
XmiI	GTMKAC	2 cut(s)	346, 385
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.