Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007581.1

Orthogroup ID

OG0018934

Physical Location & Seq

Genomic Coordinates Reverse (-)

34745 .. 36524

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007581.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgggcggctccggaaaaaccacccttgcaaaacaggtttttcttcaaaatgaagtcaagcgtcattttgattgttctgcttgggtctgtatatctcaacaatgggaaggaaagaatgtattggaagatattttaattaaactcacttccccatcagcagagaaaaggaaagaaatttccaaaatgaaaatggatgaaatagcagaggaggtctgtagtatccaacgagaaaagagatgtctggtggtccttgatgacatatggactcaagaggcttggaattcgataaaagctggattcccaatcaatgaggaaacagagagtcggatattactcactactcgcaagaaagaagtcgccttgcttgcatccagaaatgatcatctccaccaacctcagcaactagatgacaaccagtgctgggaactgtttgaaaagatagccatatgtggaagcgacaaaacagacttggaagtttattatgcaaagaagagagaattaggaaagaagatgcttgttcattgttcaggtttgccattagccataagtgtgcttgctggtcttctaagtagacgagagaaagttgaggagtgggaaacagtacttagaaatgttgataaatacataatgaggggtacaaatgtcctcgaaagagaaaacacaggtcaaggccgtctgtggaaaccttacacggcggcgcggcctctagcggcggcggaaagcttgttacgatttgagttcgattttagtcaacgccggttttctcctagctccggccaccaaatcttccgatccttagctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

268

Amino Acids

30.8

Weight (kDa)

8.4

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018934)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g22740
rosa_chinensis	RchiOBHm_Chr1g0345541
rosa_multiflora	Rmu_sc0001349.1_g000005 Rmu_sc0003762.1_g000016 Rmu_sc0005950.1_g000012 Rmu_sc0005950.1_g000014 Rmu_sc0007581.1_g000010 Rmu_sc0038146.1_g000001
rosa_samantha	Rh1CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	1 cut(s)	700
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	6 cut(s)	6, 695, 700, 710, 713, 716
AclWI	GGATC	1 cut(s)	786
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	2 cut(s)	174, 280
AfaI	GTAC	2 cut(s)	603, 637
AfiI	CCNNNNNNNGG	2 cut(s)	421, 773
AgsI	TTSAA	2 cut(s)	47, 434
AluBI	AGCT	4 cut(s)	293, 723, 771, 800
AluI	AGCT	4 cut(s)	293, 723, 771, 800
AlwI	GGATC	1 cut(s)	786
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	3 cut(s)	670, 701, 775
ApoI	RAATTY	2 cut(s)	174, 280
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	247
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BbsI	GAAGAC	1 cut(s)	554
BbvCI	CCTCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	2 cut(s)	657, 708
BciVI	GTATCC	1 cut(s)	230
BclI	TGATCA	1 cut(s)	379
BfaI	CTAG	3 cut(s)	404, 707, 768
BfmI	CTRYAG	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	5 cut(s)	7, 696, 701, 711, 714
BlsI	GCNGC	5 cut(s)	8, 697, 702, 712, 715
BmcAI	AGTACT	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	10
BmsI	GCATC	2 cut(s)	377, 501
BpiI	GAAGAC	1 cut(s)	554
Bpu10I	CCTNAGC	2 cut(s)	396, 796
BpuEI	CTTGAG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 773
Bse118I	RCCGGY	1 cut(s)	756
Bse1I	ACTGG	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	11
BseGI	GGATG	2 cut(s)	199, 368
BseLI	CCNNNNNNNGG	2 cut(s)	421, 773
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	2 cut(s)	221, 602
BseYI	CCCAGC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	700
BshFI	GGCC	3 cut(s)	672, 703, 777
BsiSI	CCGG	3 cut(s)	12, 757, 774
BslI	CCNNNNNNNGG	2 cut(s)	421, 773
BsnI	GGCC	3 cut(s)	672, 703, 777
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	379, 791
BspACI	CCGC	6 cut(s)	6, 695, 700, 710, 713, 716
BspANI	GGCC	3 cut(s)	672, 703, 777
BspCNI	CTCAG	1 cut(s)	409
BspEI	TCCGGA	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	700
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	786
BsrFI	RCCGGY	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	756
BssMI	GATC	2 cut(s)	379, 791
Bst4CI	ACNGT	2 cut(s)	429, 601
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	366, 555
BstDEI	CTNAG	4 cut(s)	396, 566, 605, 796
BstF5I	GGATG	2 cut(s)	199, 368
BstFNI	CGCG	1 cut(s)	700
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	2 cut(s)	382, 794
BstMBI	GATC	2 cut(s)	379, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	700
BstV2I	GAAGAC	1 cut(s)	554
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	672, 703, 777
BtsCI	GGATG	2 cut(s)	199, 368
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	366, 555
CfoI	GCGC	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	756
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	602, 636
CviAII	CATG	1 cut(s)	804
CviQI	GTAC	2 cut(s)	602, 636
DdeI	CTNAG	4 cut(s)	396, 566, 605, 796
DpnI	GATC	2 cut(s)	381, 793
DpnII	GATC	2 cut(s)	379, 791
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	807
FaiI	YATR	9 cut(s)	92, 260, 262, 446, 448, 483, 545, 626, 805
FatI	CATG	1 cut(s)	803
FauNDI	CATATG	2 cut(s)	260, 446
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	5 cut(s)	7, 696, 701, 711, 714
FokI	GGATG	2 cut(s)	206, 355
Fsp4HI	GCNGC	5 cut(s)	7, 696, 701, 711, 714
FspBI	CTAG	3 cut(s)	404, 707, 768
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	5 cut(s)	7, 696, 701, 711, 714
GsaI	CCCAGC	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	672, 703, 777
HapII	CCGG	3 cut(s)	12, 757, 774
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	1 cut(s)	807
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HincII	GTYRAC	1 cut(s)	752
HindII	GTYRAC	1 cut(s)	752
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	3 cut(s)	265, 297, 322
HpaII	CCGG	3 cut(s)	12, 757, 774
Hpy166II	GTNNAC	2 cut(s)	572, 752
Hpy188I	TCNGA	2 cut(s)	327, 791
Hpy188III	TCNNGA	3 cut(s)	12, 269, 372
Hpy8I	GTNNAC	2 cut(s)	572, 752
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	429, 601
HpyCH4V	TGCA	3 cut(s)	29, 368, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	4 cut(s)	396, 566, 605, 796
Hsp92II	CATG	1 cut(s)	807
HspAI	GCGC	1 cut(s)	698
Kpn2I	TCCGGA	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	379, 791
LmnI	GCTCC	3 cut(s)	14, 776, 805
LweI	GCATC	2 cut(s)	377, 501
MaeI	CTAG	3 cut(s)	404, 707, 768
MaeIII	GTNAC	1 cut(s)	726
MalI	GATC	2 cut(s)	381, 793
MboI	GATC	2 cut(s)	379, 791
MboII	GAAGA	6 cut(s)	35, 137, 502, 520, 554, 778
MluCI	AATT	4 cut(s)	135, 174, 280, 497
MlyI	GAGTC	2 cut(s)	259, 331
MmeI	TCCRAC	2 cut(s)	247, 305
MnlI	CCTC	9 cut(s)	199, 202, 265, 304, 405, 580, 624, 656, 714
MroI	TCCGGA	1 cut(s)	11
MseI	TTAA	2 cut(s)	134, 138
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	3 cut(s)	12, 757, 774
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	2 cut(s)	260, 446
NdeII	GATC	2 cut(s)	379, 791
NlaIII	CATG	1 cut(s)	807
NlaIV	GGNNCC	1 cut(s)	10
PacI	TTAATTAA	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	5 cut(s)	8, 697, 702, 712, 715
PleI	GAGTC	2 cut(s)	259, 330
PpsI	GAGTC	2 cut(s)	259, 330
PspFI	CCCAGC	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	247
RsaI	GTAC	2 cut(s)	603, 637
RsaNI	GTAC	2 cut(s)	602, 636
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	134, 138
SatI	GCNGC	5 cut(s)	7, 696, 701, 711, 714
Sau3AI	GATC	2 cut(s)	379, 791
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	2 cut(s)	259, 331
SfaNI	GCATC	2 cut(s)	377, 501
SfcI	CTRYAG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	4 cut(s)	135, 174, 280, 497
SsiI	CCGC	6 cut(s)	6, 695, 700, 710, 713, 716
SspMI	CTAG	3 cut(s)	404, 707, 768
TaaI	ACNGT	2 cut(s)	429, 601
TaqI	TCGA	3 cut(s)	284, 648, 741
TasI	AATT	4 cut(s)	135, 174, 280, 497
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	5 cut(s)	9, 698, 703, 713, 716
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	134, 138
Tru9I	TTAA	2 cut(s)	134, 138
TscAI	CASTG	1 cut(s)	422
TspDTI	ATGAA	4 cut(s)	66, 200, 210, 509
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	174, 280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	571
XspI	CTAG	3 cut(s)	404, 707, 768
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.