Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003762.1

Orthogroup ID

OG0018934

Physical Location & Seq

Genomic Coordinates Reverse (-)

62158 .. 62445

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003762.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgaaaaaggatgaaatagcaagggaggtatgtagtatccaacgagaaaagagatatctggtggtccttgatgacatatggactcaagaggcttggaattcgataaaagctggattcccaatcaatgaggaaacagagagccggatattactcactactcgcaagaaagaagtcgccttgcttgcatccagaaatgactatctccaccagcctcaacctctaaatgatatgcaaagtgttggaggccgcacttgtaatgccacaagcaaccttgtccagggtcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

95

Amino Acids

10.9

Weight (kDa)

6.72

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018934)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g22740
rosa_chinensis	RchiOBHm_Chr1g0345541
rosa_multiflora	Rmu_sc0001349.1_g000005 Rmu_sc0003762.1_g000016 Rmu_sc0005950.1_g000012 Rmu_sc0005950.1_g000014 Rmu_sc0007581.1_g000010 Rmu_sc0038146.1_g000001
rosa_samantha	Rh1CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	16, 185
BseLI	CCNNNNNNNGG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	277
BsnI	GGCC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	16, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	16, 185
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	64
CviJI	RGCY	5 cut(s)	92, 110, 141, 211, 246
CviKI_1	RGCY	5 cut(s)	92, 110, 141, 211, 246
Eco32I	GATATC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	56
FaiI	YATR	4 cut(s)	31, 77, 79, 230
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	2 cut(s)	23, 172
Fsp4HI	GCNGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	142
HinfI	GANTC	2 cut(s)	82, 114
HpaII	CCGG	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	86, 189
HpyCH4V	TGCA	2 cut(s)	185, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
LpnPI	CCDG	6 cut(s)	44, 96, 155, 202, 221, 263
LweI	GCATC	1 cut(s)	194
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	2 cut(s)	64, 220
MnlI	CCTC	6 cut(s)	19, 82, 121, 222, 228, 236
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeI	CATATG	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	4 cut(s)	30, 112, 220, 273
SfaNI	GCATC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	276
TaqI	TCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	97
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	17, 27
VpaK11BI	GGWCC	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.