pycom13g29230

transport protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
25784503 .. 25787842
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1248 bp
ATGTCGGAGATGGCGAACACAGACCCGGAAGGGATCGACGGAGTTCGGATGACCTGGAACGTCTGGCCACGCACCAAGGTGGAGGCCAGCAAGAGCGTGATCCCACTGGCCGCCTGCATCTCCCCGATCCGGTCCCACCCCGACATCCCCACGCTCCCCTACGCGCCGCTCCGCTGCAAGACCTGCTCTGCCGTGCTGAACCCCTTTGCGCGCGTGGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGCGCAATCACTTCCCGCCTCACTACGCCGCGATCTCTGAGACCAATCTCCCTGGTGAACTCTACCCTCAGTACACCACCCTCCAATACGCTCTGCCGACCGATTCCGCCGCTCCTCAATCTCTGCCGTCCCCGGTTTTTGTCTTCGTGCTCGACACGTGTATGATCGAGGAGGAGATGGAATATGTCAAATCGGCGCTCAAAAGGGCACTTGGGTTGCTGCCCGATAATGCGCTTGTTGGGTTCGTTTCGTATGGAACCCAAGTTCAGGTCCATGAATTGGGGTTCTCTGATTTGTCGAAAGTGTATGTCTTTCGGGGTAGTAAGGAGATTTCAATCGATCAGGTTTTGGAGCAATTGGGTCTCAGCGTTCTTGGTCGGAGACCTGGTCCAATTGGTGGCGGAGGGTACCAGCCGAAGGGGGTGCAAATGGGAATTCCCAATGCTGGTGTAAACCGCTTTTTGTTGCCTGCTTCAGATTGCGAATACACACTGAACACGCTGTTGGATGAATTGCAAACGGACCAGTGGCCTGTGCCACAAGGAAGTCGTGCTTCCAGGTGCACAGGAGTGGCGTTGAGTGTTGCTGCAGGGTTACTTGGAGCTTGTCTGCCTGGGACTGGGGCTCGCATTGTAGCTTTGGTTGGCGGTCCATGCACTGAGGGGCCTGGCGCGATTGTATCGAAAGATATGTCAGACCCAGTACGTTCCCATAAAGATCTGGATAAGGATGCGGCACCGTACTTTAAGAAAGCAATCAAGTTTTATGAAAATCTTGCAAAACAGCTGGTTAGCCAAGGCCATGTCTTAGACCTGTTTGCATCTGCACTCGATCAGGTTGGGGTTGCAGAAATGAAAGTTGCAATTGAAAGAACTGGTGGGCTTGTTGTTCTAGCAGAAAGTTTTGGTCATTCTGTATTCAAAGACTCTTTCAAGCGTGTTTTTGAAGAAGGGGAACAATCGCTTGGCCTATTGTTTCAGTGGTACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

416

Amino Acids

45.09

Weight (kDa)

5.72

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 56 - 94 3.7e-17 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 129 - 400 1.7e-66 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 2 cut(s) 663, 991
AccB7I CCANNNNNTGG 3 cut(s) 234, 535, 653
AccBSI CCGCTC 2 cut(s) 169, 368
AccII CGCG 5 cut(s) 164, 211, 213, 287, 929
AclWI GGATC 4 cut(s) 41, 94, 121, 245
AcoI YGGCCR 2 cut(s) 65, 108
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 1 cut(s) 714
AcvI CACGTG 1 cut(s) 414
AfaI GTAC 5 cut(s) 329, 665, 960, 998, 1241
AfiI CCNNNNNNNGG 8 cut(s) 129, 234, 523, 535, 653, 673, 701, 875
AflIII ACRYGT 2 cut(s) 411, 413
AgsI TTSAA 5 cut(s) 591, 1124, 1177, 1189, 1202
AjnI CCWGG 6 cut(s) 53, 307, 640, 812, 868, 922
AjuI GAANNNNNNNTTGG 4 cut(s) 743, 775, 1203, 1235
AleI CACNNNNGTG 2 cut(s) 77, 824
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
AluBI AGCT 3 cut(s) 860, 893, 1042
AluI AGCT 3 cut(s) 860, 893, 1042
Alw21I GWGCWC 2 cut(s) 408, 821
Alw26I GTCTC 3 cut(s) 290, 623, 631
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 4 cut(s) 41, 94, 121, 245
AoxI GGCC 7 cut(s) 65, 84, 108, 785, 920, 1054, 1222
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 3 cut(s) 174, 475, 842
ApoI RAATTY 1 cut(s) 690
ArsI GACNNNNNNTTYG 2 cut(s) 932, 964
Asp718I GGTACC 1 cut(s) 663
AspLEI GCGC 7 cut(s) 166, 211, 213, 261, 454, 490, 929
AspS9I GGNCC 6 cut(s) 132, 526, 644, 778, 905, 920
AsuC2I CCSGG 2 cut(s) 26, 389
AsuHPI GGTGA 2 cut(s) 214, 323
AvaII GGWCC 5 cut(s) 132, 526, 644, 778, 905
BaeGI GKGCMC 2 cut(s) 466, 821
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 2 cut(s) 663, 991
BanII GRGCYC 1 cut(s) 883
BbrPI CACGTG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 2 cut(s) 408, 821
BbvI GCAGC 3 cut(s) 161, 462, 829
BccI CCATC 2 cut(s) 4, 427
BceAI ACGGC 2 cut(s) 176, 367
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 6 cut(s) 55, 309, 642, 814, 870, 924
BcnI CCSGG 2 cut(s) 26, 389
BcoDI GTCTC 3 cut(s) 290, 623, 631
BfaI CTAG 1 cut(s) 1148
BfmI CTRYAG 1 cut(s) 843
BfoI RGCGCY 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 191
BglII AGATCT 2 cut(s) 231, 973
BisI GCNGC 8 cut(s) 111, 167, 175, 285, 366, 476, 843, 990
BlsI GCNGC 8 cut(s) 112, 168, 176, 286, 367, 477, 844, 991
Bme1390I CCNGG 8 cut(s) 26, 55, 309, 389, 642, 814, 870, 924
Bme18I GGWCC 5 cut(s) 132, 526, 644, 778, 905
BmgT120I GGNCC 6 cut(s) 132, 526, 644, 778, 905, 920
BmiI GGNNCC 5 cut(s) 134, 514, 665, 921, 993
BmrFI CCNGG 8 cut(s) 26, 55, 309, 389, 642, 814, 870, 924
BmrI ACTGGG 2 cut(s) 885, 950
BmsI GCATC 3 cut(s) 126, 976, 1085
BmuI ACTGGG 2 cut(s) 885, 950
BpiI GAAGAC 1 cut(s) 391
BpuMI CCSGG 2 cut(s) 26, 389
Bsa29I ATCGAT 1 cut(s) 594
BsaAI YACGTR 1 cut(s) 414
BsaBI GATNNNNATC 2 cut(s) 236, 590
BsaI GGTCTC 3 cut(s) 290, 623, 631
BsaJI CCNNGG 5 cut(s) 75, 307, 387, 869, 1051
BsaWI WCCGGW 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 628, 658
Bsc4I CCNNNNNNNGG 8 cut(s) 129, 234, 523, 535, 653, 673, 701, 875
Bse1I ACTGG 5 cut(s) 111, 781, 880, 956, 1135
Bse8I GATNNNNATC 2 cut(s) 236, 590
BseBI CCWGG 6 cut(s) 55, 309, 642, 814, 870, 924
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 5 cut(s) 75, 307, 387, 869, 1051
BseGI GGATG 4 cut(s) 54, 144, 769, 991
BseJI GATNNNNATC 2 cut(s) 236, 590
BseLI CCNNNNNNNGG 8 cut(s) 129, 234, 523, 535, 653, 673, 701, 875
BseMII CTCAG 4 cut(s) 285, 338, 634, 906
BseNI ACTGG 5 cut(s) 111, 781, 880, 956, 1135
BsePI GCGCGC 1 cut(s) 209
BseRI GAGGAG 3 cut(s) 360, 440, 443
BseSI GKGCMC 2 cut(s) 466, 821
BseXI GCAGC 3 cut(s) 161, 462, 829
BsgI GTGCAG 1 cut(s) 1065
Bsh1236I CGCG 5 cut(s) 164, 211, 213, 287, 929
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
BshNI GGYRCC 2 cut(s) 663, 991
BshVI ATCGAT 1 cut(s) 594
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 408, 821
BsiSI CCGG 3 cut(s) 26, 130, 389
BslFI GGGAC 3 cut(s) 118, 370, 886
BslI CCNNNNNNNGG 8 cut(s) 129, 234, 523, 535, 653, 673, 701, 875
BsmAI GTCTC 3 cut(s) 290, 623, 631
BsmFI GGGAC 3 cut(s) 118, 370, 886
BsnI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
Bso31I GGTCTC 3 cut(s) 290, 623, 631
Bsp1286I GDGCHC 4 cut(s) 408, 466, 821, 883
BspANI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
BspCNI CTCAG 4 cut(s) 286, 337, 633, 907
BspDI ATCGAT 1 cut(s) 594
BspFNI CGCG 5 cut(s) 164, 211, 213, 287, 929
BspLI GGNNCC 5 cut(s) 134, 514, 665, 921, 993
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 4 cut(s) 41, 94, 121, 245
BspT107I GGYRCC 2 cut(s) 663, 991
BspTNI GGTCTC 3 cut(s) 290, 623, 631
BsrBI CCGCTC 2 cut(s) 169, 368
BsrI ACTGG 5 cut(s) 111, 781, 880, 956, 1135
BssECI CCNNGG 5 cut(s) 75, 307, 387, 869, 1051
BssHII GCGCGC 1 cut(s) 209
BssT1I CCWWGG 2 cut(s) 75, 1051
Bst2UI CCWGG 6 cut(s) 55, 309, 642, 814, 870, 924
Bst4CI ACNGT 1 cut(s) 996
BstAPI GCANNNNNTGC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 414
BstC8I GCNNGC 5 cut(s) 88, 115, 211, 726, 883
BstDEI CTNAG 5 cut(s) 294, 324, 620, 915, 1063
BstF5I GGATG 4 cut(s) 54, 144, 769, 991
BstFNI CGCG 5 cut(s) 164, 211, 213, 287, 929
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 7 cut(s) 166, 211, 213, 261, 454, 490, 929
BstMAI GTCTC 3 cut(s) 290, 623, 631
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 4 cut(s) 183, 249, 258, 909
BstNI CCWGG 6 cut(s) 55, 309, 642, 814, 870, 924
BstSCI CCNGG 8 cut(s) 24, 53, 307, 387, 640, 812, 868, 922
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 2 cut(s) 466, 821
BstUI CGCG 5 cut(s) 164, 211, 213, 287, 929
BstV1I GCAGC 3 cut(s) 161, 462, 829
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 3 cut(s) 231, 237, 973
BstYI RGATCY 3 cut(s) 231, 237, 973
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
BsuTUI ATCGAT 1 cut(s) 594
BtsCI GGATG 4 cut(s) 54, 144, 769, 991
BtsIMutI CAGTG 5 cut(s) 104, 746, 788, 912, 1241
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 5 cut(s) 88, 115, 211, 726, 883
CfoI GCGC 7 cut(s) 166, 211, 213, 261, 454, 490, 929
Cfr13I GGNCC 6 cut(s) 132, 526, 644, 778, 905, 920
ClaI ATCGAT 1 cut(s) 594
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 5 cut(s) 328, 664, 959, 997, 1240
CviAII CATG 3 cut(s) 530, 909, 1058
CviQI GTAC 5 cut(s) 328, 664, 959, 997, 1240
DdeI CTNAG 5 cut(s) 294, 324, 620, 915, 1063
EaeI YGGCCR 2 cut(s) 65, 108
EciI GGCGGA 2 cut(s) 352, 672
Eco130I CCWWGG 2 cut(s) 75, 1051
Eco24I GRGCYC 1 cut(s) 883
Eco31I GGTCTC 3 cut(s) 290, 623, 631
Eco47I GGWCC 5 cut(s) 132, 526, 644, 778, 905
Eco57I CTGAAG 1 cut(s) 714
Eco72I CACGTG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 920
EcoRI GAATTC 1 cut(s) 690
EcoRII CCWGG 6 cut(s) 53, 307, 640, 812, 868, 922
EcoT14I CCWWGG 2 cut(s) 75, 1051
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 2 cut(s) 75, 1051
FaeI CATG 3 cut(s) 533, 912, 1061
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FaqI GGGAC 3 cut(s) 118, 370, 886
FatI CATG 3 cut(s) 529, 908, 1057
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 8 cut(s) 111, 167, 175, 285, 366, 476, 843, 990
FokI GGATG 4 cut(s) 61, 131, 776, 998
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 8 cut(s) 111, 167, 175, 285, 366, 476, 843, 990
FspBI CTAG 1 cut(s) 1148
GlaI GCGC 7 cut(s) 165, 210, 212, 260, 453, 489, 928
GluI GCNGC 8 cut(s) 111, 167, 175, 285, 366, 476, 843, 990
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
HapII CCGG 3 cut(s) 26, 130, 389
HhaI GCGC 7 cut(s) 166, 211, 213, 261, 454, 490, 929
Hin1II CATG 3 cut(s) 533, 912, 1061
Hin6I GCGC 7 cut(s) 164, 209, 211, 259, 452, 488, 927
HinP1I GCGC 7 cut(s) 164, 209, 211, 259, 452, 488, 927
HinfI GANTC 2 cut(s) 359, 1181
HpaII CCGG 3 cut(s) 26, 130, 389
HphI GGTGA 2 cut(s) 214, 323
Hpy166II GTNNAC 6 cut(s) 217, 314, 330, 709, 819, 1242
Hpy188I TCNGA 7 cut(s) 7, 48, 295, 547, 636, 733, 952
Hpy188III TCNNGA 2 cut(s) 235, 977
Hpy8I GTNNAC 6 cut(s) 217, 314, 330, 709, 819, 1242
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 23, 256, 667, 1199
HpyCH4III ACNGT 1 cut(s) 996
HpyCH4IV ACGT 3 cut(s) 60, 413, 961
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 249, 258, 909
HpyF3I CTNAG 5 cut(s) 294, 324, 620, 915, 1063
HpySE526I ACGT 3 cut(s) 60, 413, 961
Hsp92II CATG 3 cut(s) 533, 912, 1061
HspAI GCGC 7 cut(s) 164, 209, 211, 259, 452, 488, 927
KpnI GGTACC 1 cut(s) 667
LmnI GCTCC 5 cut(s) 159, 174, 373, 607, 857
Lsp1109I GCAGC 3 cut(s) 161, 462, 829
LweI GCATC 3 cut(s) 126, 976, 1085
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 1 cut(s) 1148
MaeII ACGT 3 cut(s) 60, 413, 961
MaeIII GTNAC 1 cut(s) 849
MbiI CCGCTC 2 cut(s) 169, 368
MboII GAAGA 2 cut(s) 391, 1214
MfeI CAATTG 3 cut(s) 611, 648, 1119
MflI RGATCY 3 cut(s) 231, 237, 973
MhlI GDGCHC 4 cut(s) 408, 466, 821, 883
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 6 cut(s) 533, 611, 648, 690, 767, 1119
MluNI TGGCCA 1 cut(s) 67
MlyI GAGTC 1 cut(s) 1175
MmeI TCCRAC 2 cut(s) 614, 741
MnlI CCTC 9 cut(s) 76, 285, 333, 347, 381, 418, 421, 653, 910
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MseI TTAA 1 cut(s) 1002
MslI CAYNNNNRTG 3 cut(s) 77, 416, 824
Msp20I TGGCCA 1 cut(s) 67
MspA1I CMGCKG 2 cut(s) 174, 1042
MspI CCGG 3 cut(s) 26, 130, 389
MspR9I CCNGG 8 cut(s) 26, 55, 309, 389, 642, 814, 870, 924
MunI CAATTG 3 cut(s) 611, 648, 1119
MvaI CCWGG 6 cut(s) 55, 309, 642, 814, 870, 924
MvnI CGCG 5 cut(s) 164, 211, 213, 287, 929
MwoI GCNNNNNNNGC 4 cut(s) 183, 249, 258, 909
NciI CCSGG 2 cut(s) 26, 389
NlaIII CATG 3 cut(s) 533, 912, 1061
NlaIV GGNNCC 5 cut(s) 134, 514, 665, 921, 993
OliI CACNNNNGTG 2 cut(s) 77, 824
PauI GCGCGC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 642
PflMI CCANNNNNTGG 3 cut(s) 234, 535, 653
PkrI GCNGC 8 cut(s) 112, 168, 176, 286, 367, 477, 844, 991
PleI GAGTC 1 cut(s) 1175
PmaCI CACGTG 1 cut(s) 414
PmlI CACGTG 1 cut(s) 414
PpsI GAGTC 1 cut(s) 1175
Ppu21I YACGTR 1 cut(s) 414
Psp6I CCWGG 6 cut(s) 53, 307, 640, 812, 868, 922
PspCI CACGTG 1 cut(s) 414
PspGI CCWGG 6 cut(s) 53, 307, 640, 812, 868, 922
PspN4I GGNNCC 5 cut(s) 134, 514, 665, 921, 993
PspPI GGNCC 6 cut(s) 132, 526, 644, 778, 905, 920
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 3 cut(s) 231, 237, 973
PsyI GACNNNGTC 1 cut(s) 642
PteI GCGCGC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 1042
RsaI GTAC 5 cut(s) 329, 665, 960, 998, 1241
RsaNI GTAC 5 cut(s) 328, 664, 959, 997, 1240
RseI CAYNNNNRTG 3 cut(s) 77, 416, 824
SaqAI TTAA 1 cut(s) 1002
SatI GCNGC 8 cut(s) 111, 167, 175, 285, 366, 476, 843, 990
Sau96I GGNCC 6 cut(s) 132, 526, 644, 778, 905, 920
SchI GAGTC 1 cut(s) 1175
ScrFI CCNGG 8 cut(s) 26, 55, 309, 389, 642, 814, 870, 924
SduI GDGCHC 4 cut(s) 408, 466, 821, 883
SexAI ACCWGGT 1 cut(s) 640
SfaNI GCATC 3 cut(s) 126, 976, 1085
SfcI CTRYAG 1 cut(s) 843
SinI GGWCC 5 cut(s) 132, 526, 644, 778, 905
SmiMI CAYNNNNRTG 3 cut(s) 77, 416, 824
Sse9I AATT 6 cut(s) 533, 611, 648, 690, 767, 1119
SspMI CTAG 1 cut(s) 1148
StyD4I CCNGG 8 cut(s) 24, 53, 307, 387, 640, 812, 868, 922
StyI CCWWGG 2 cut(s) 75, 1051
TaaI ACNGT 1 cut(s) 996
TaiI ACGT 3 cut(s) 63, 416, 964
TaqI TCGA 7 cut(s) 36, 408, 423, 554, 594, 938, 1086
TaqII GACCGA 1 cut(s) 371
TasI AATT 6 cut(s) 533, 611, 648, 690, 767, 1119
TatI WGTACW 1 cut(s) 327
TauI GCSGC 5 cut(s) 113, 169, 287, 368, 992
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 1002
Tru9I TTAA 1 cut(s) 1002
TscAI CASTG 5 cut(s) 111, 753, 788, 919, 1241
TseI GCWGC 3 cut(s) 174, 475, 842
TspDTI ATGAA 4 cut(s) 546, 780, 1038, 1124
TspGWI ACGGA 2 cut(s) 54, 791
TspRI CASTG 5 cut(s) 111, 753, 788, 919, 1241
Tth111I GACNNNGTC 1 cut(s) 642
Van91I CCANNNNNTGG 3 cut(s) 234, 535, 653
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 5 cut(s) 132, 526, 644, 778, 905
XapI RAATTY 1 cut(s) 690
XspI CTAG 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.