Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012093

Physical Location & Seq

Genomic Coordinates Reverse (-)

25818739 .. 25819113

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATGAAAGTTCCCATTTTTGCCCTTCTGATCTGCCTCCTCTTTGTCTTGTCGAACGGGTACGGCGGCATGGTCGGGGGAAGGAGGCAGATCGAGAACGTGAAGTCGAACAAGGAGGTTCAAGAGTTGGGGAGGTTTTCGGTGGCGGAATATAACAGCAGGCAGAAGGCAAGCCGGAAGATGGACAGCGGCGGAGAGCTTCAATTTTTAGAGGTGGTGGAGGCGCAGAGCCAGGTGGTTTCTGGCATCAAGTACTACCTCAAGGTGTCGGCCGTGAGGAATGGGGCGCACATGTTGTTCGATTCGGAGGTGGTGGTGAAGCCGTGGCTCCGTTCCAAGCAATTGCTCAACTTTGCCCCTCATGCTCCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

125

Amino Acids

13.88

Weight (kDa)

9.67

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	32 - 119	6.2e-13	Aspartic acid proteinase inhibitor
Cystatin	PF00031	32 - 95	4e-10	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31980
fragaria_vesca	FvH4_4g12780
malus_domestica	MD04G1023200.v1.1
prunus_persica	Prupe.1G014700_v2.0.a1 Prupe.1G172900_v2.0.a1 Prupe.3G089900_v2.0.a1
pyrus_communis	pycom13g29260
rosa_chinensis	RchiOBHm_Chr4g0402871 RchiOBHm_Chr4g0412111
rosa_laevigata	RLG00000008320
rosa_multiflora	Rmu_co8185456.1_g000001 Rmu_sc0001651.1_g000013 Rmu_sc0001651.1_g000014
rosa_roxburghii	Rroxscaffold_5G00356380
rosa_rugosa	Rorug04G0106400
rosa_samantha	Rh4BG170200 Rh4CG182300 Rh4DG165700
rosa_wichuraiana	Rw4G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	66, 146, 189, 192
AcoI	YGGCCR	1 cut(s)	270
AfaI	GTAC	2 cut(s)	62, 254
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	122, 203
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
AoxI	GGCC	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	226, 289
AsuHPI	GGTGA	1 cut(s)	328
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	3 cut(s)	79, 257, 307
BciT130I	CCWGG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	67, 190
BlsI	GCNGC	2 cut(s)	68, 191
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	29
BseX3I	CGGCCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	30, 90
BspACI	CCGC	4 cut(s)	66, 146, 189, 192
BspANI	GGCC	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	2 cut(s)	30, 90
Bst2UI	CCWGG	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	161, 172
BstDSI	CCRYGG	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	226, 289
BstKTI	GATC	2 cut(s)	33, 93
BstMBI	GATC	2 cut(s)	30, 90
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	231
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	161, 172
CfoI	GCGC	2 cut(s)	226, 289
Csp6I	GTAC	2 cut(s)	61, 253
CviAII	CATG	3 cut(s)	70, 292, 362
CviJI	RGCY	6 cut(s)	174, 199, 231, 272, 322, 328
CviKI_1	RGCY	6 cut(s)	174, 199, 231, 272, 322, 328
CviQI	GTAC	2 cut(s)	61, 253
DpnI	GATC	2 cut(s)	32, 92
DpnII	GATC	2 cut(s)	30, 90
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
EciI	GGCGGA	2 cut(s)	161, 207
EclXI	CGGCCG	1 cut(s)	270
Eco52I	CGGCCG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	73, 295, 365
FaiI	YATR	4 cut(s)	71, 153, 293, 363
FatI	CATG	3 cut(s)	69, 291, 361
Fnu4HI	GCNGC	2 cut(s)	67, 190
Fsp4HI	GCNGC	2 cut(s)	67, 190
GlaI	GCGC	2 cut(s)	225, 288
GluI	GCNGC	2 cut(s)	67, 190
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	175
HhaI	GCGC	2 cut(s)	226, 289
Hin1II	CATG	3 cut(s)	73, 295, 365
Hin6I	GCGC	2 cut(s)	224, 287
HinP1I	GCGC	2 cut(s)	224, 287
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	30, 307
Hpy188III	TCNNGA	2 cut(s)	94, 122
HpyAV	CCTTC	3 cut(s)	35, 75, 160
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	73, 295, 365
HspAI	GCGC	2 cut(s)	224, 287
Kzo9I	GATC	2 cut(s)	30, 90
LmnI	GCTCC	2 cut(s)	333, 370
LpnPI	CCDG	5 cut(s)	145, 188, 218, 228, 245
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	99
MalI	GATC	2 cut(s)	32, 92
MboI	GATC	2 cut(s)	30, 90
MboII	GAAGA	1 cut(s)	190
MfeI	CAATTG	2 cut(s)	341, 370
MluCI	AATT	3 cut(s)	203, 341, 370
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	2 cut(s)	341, 370
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	2 cut(s)	30, 90
NlaIII	CATG	3 cut(s)	73, 295, 365
NlaIV	GGNNCC	1 cut(s)	329
NspI	RCATGY	1 cut(s)	295
PciI	ACATGT	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	68, 191
PscI	ACATGT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	329
RsaI	GTAC	2 cut(s)	62, 254
RsaNI	GTAC	2 cut(s)	61, 253
SatI	GCNGC	2 cut(s)	67, 190
Sau3AI	GATC	2 cut(s)	30, 90
ScaI	AGTACT	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	9 cut(s)	102, 120, 137, 201, 216, 237, 261, 267, 312
SfaNI	GCATC	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	203, 341, 370
SsiI	CCGC	4 cut(s)	66, 146, 189, 192
StyD4I	CCNGG	1 cut(s)	231
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	53, 93, 107, 300
TasI	AATT	3 cut(s)	203, 341, 370
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	2 cut(s)	69, 192
TfiI	GAWTC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	320
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.