pycom14g00030

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
31218 .. 31627
410 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGTGTCCTCTAAGGTTCATCTTGTTGTTCTTCTCAGCAATCCTTGCAGGATACTTTGCATGGAGGACGGTTCGTTCTTCTCCCGCCCGAACCGACATCATAACCTCCTCACAGCTTGGTACTACCAGCATTAATGAACATATGGGATCATCCAAACATGAACAAGAAGCATTCAATTTTAAATTTATGATTCAGAATGGCTTCTGGGTACTTGTGGACATGGCCAGCGGGAAATACTTGTGGAGGAATTTTAAGGAGATGAATGAAGGCAAAGTAAAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.86

Weight (kDa)

9.39

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015901)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 84, 228
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 182, 247
AfaI GTAC 2 cut(s) 121, 210
AgsI TTSAA 1 cut(s) 175
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 222
ApoI RAATTY 2 cut(s) 182, 247
AseI ATTAAT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 224
BciVI GTATCC 1 cut(s) 44
BfuI GTATCC 1 cut(s) 44
BseGI GGATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 146
BspACI CCGC 2 cut(s) 84, 228
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 47
BspPI GGATC 1 cut(s) 154
BssMI GATC 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 11, 34
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 1 cut(s) 149
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 44
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 120, 209
CviAII CATG 3 cut(s) 60, 158, 220
CviJI RGCY 3 cut(s) 115, 201, 224
CviKI_1 RGCY 3 cut(s) 115, 201, 224
CviQI GTAC 2 cut(s) 120, 209
DdeI CTNAG 2 cut(s) 11, 34
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
DraI TTTAAA 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 222
FaeI CATG 3 cut(s) 63, 161, 223
FaiI YATR 7 cut(s) 61, 101, 141, 143, 159, 188, 221
FatI CATG 3 cut(s) 59, 157, 219
FauI CCCGC 2 cut(s) 91, 221
FauNDI CATATG 1 cut(s) 141
FokI GGATG 1 cut(s) 136
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 3 cut(s) 63, 161, 223
HinfI GANTC 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 47, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 11, 34
Hsp92II CATG 3 cut(s) 63, 161, 223
Kzo9I GATC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 33, 139, 190, 238
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 22, 69
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 3 cut(s) 175, 182, 247
MluNI TGGCCA 1 cut(s) 224
MnlI CCTC 5 cut(s) 18, 57, 115, 118, 237
Mox20I TGGCCA 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 200
MscI TGGCCA 1 cut(s) 224
MseI TTAA 3 cut(s) 132, 180, 252
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeI CATATG 1 cut(s) 141
NdeII GATC 1 cut(s) 146
NlaIII CATG 3 cut(s) 63, 161, 223
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 132
RsaI GTAC 2 cut(s) 121, 210
RsaNI GTAC 2 cut(s) 120, 209
SaqAI TTAA 3 cut(s) 132, 180, 252
Sau3AI GATC 1 cut(s) 146
SetI ASST 3 cut(s) 17, 107, 117
Sse9I AATT 3 cut(s) 175, 182, 247
SsiI CCGC 2 cut(s) 84, 228
TaaI ACNGT 1 cut(s) 70
TasI AATT 3 cut(s) 175, 182, 247
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 3 cut(s) 132, 180, 252
Tru9I TTAA 3 cut(s) 132, 180, 252
TspDTI ATGAA 5 cut(s) 7, 150, 174, 275, 279
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 2 cut(s) 182, 247
XmnI GAANNNNTTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.