pycom14g00330

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012033
Physical Location & Seq
Forward (+)
192578 .. 193398
821 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 453 bp
ATGGAAACCAAACCCGTGGCGAAGGATGAGACGAGATATCAGGATTTCGAACCGTTTTGCCAATGGAACAAGGAGGAAGGATATGACATTCTTGAAGTTCATCTACCAGGTTTCAAAAGACAAGATATTAGAGTTCAAATCAACAATTGGGGCATCCTAACCATTAGCGGAAAGCAACCTAGGGTTGAAGAAACTACATCTGCTATACCCAGCCGCTTCTGTAAAGATCGATCAAAATTTCTAAACATTGTACTGCGAACGGTATCCGCGCTAACTCAGCACGGCGGAGTGAATGCTGCGTGGGCGTCAGTTAATGACTACGTAGTTGGTTTAAGAAGCAAAGTTTTGAAGCCAAGGCTGAGCAAGAAGACGGCTGTGATGGTGGTGGTGGTTGTTCTGGTCATGGCTCTGGGAGTTTATGTAGTATGTAGATATCCAAAGTCAGCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSP20

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

9.57

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54400
fragaria_vesca FvH4_7g04830
malus_domestica MD12G1007500.v1.1 MD12G1007600.v1.1 MD14G1004900.v1.1
prunus_persica Prupe.7G008300_v2.0.a1
pyrus_communis pycom12g00550 pycom12g00560 pycom14g00330
rosa_chinensis RchiOBHm_Chr3g0496561
rosa_laevigata RLG00000022518
rosa_multiflora Rmu_sc0004122.1_g000006
rosa_roxburghii Rroxscaffold_6G00388910
rosa_rugosa Rorug03G0284600
rosa_samantha Rh3AG329800 Rh3BG365500 Rh3CG362800 Rh3DG365800
rosa_wichuraiana Rw3G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 269
AciI CCGC 4 cut(s) 168, 214, 267, 285
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 1 cut(s) 252
AgsI TTSAA 5 cut(s) 95, 115, 137, 188, 349
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
Alw26I GTCTC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 236
AspA2I CCTAGG 1 cut(s) 179
AspLEI GCGC 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 48
AvrII CCTAGG 1 cut(s) 179
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 373
BceAI ACGGC 2 cut(s) 298, 387
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 180, 447
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 2 cut(s) 214, 297
BlnI CCTAGG 1 cut(s) 179
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 2 cut(s) 215, 298
Bme1390I CCNGG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 48
Bsa29I ATCGAT 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 15, 179, 353
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
BseBI CCWGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 229
BseDI CCNNGG 3 cut(s) 15, 179, 353
BseGI GGATG 2 cut(s) 31, 153
BseMII CTCAG 2 cut(s) 290, 350
BseXI GCAGC 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 269
BshVI ATCGAT 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 2 cut(s) 226, 230
Bsp1720I GCTNAGC 1 cut(s) 359
BspACI CCGC 4 cut(s) 168, 214, 267, 285
BspCNI CTCAG 2 cut(s) 289, 351
BspDI ATCGAT 1 cut(s) 229
BspFNI CGCG 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 48
BssECI CCNNGG 3 cut(s) 15, 179, 353
BssMI GATC 2 cut(s) 226, 230
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 2 cut(s) 179, 353
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 54, 262
BstACI GRCGYC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 322
BstBI TTCGAA 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 276, 359
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 31, 153
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 2 cut(s) 229, 233
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 226, 230
BstMWI GCNNNNNNNGC 2 cut(s) 277, 302
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSNI TACGTA 1 cut(s) 322
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 374
BstXI CCANNNNNNTGG 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 229
BsuI GTATCC 1 cut(s) 274
BsuTUI ATCGAT 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 31, 153
CfoI GCGC 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 229
CseI GACGC 1 cut(s) 294
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 1 cut(s) 251
CviAII CATG 1 cut(s) 403
CviJI RGCY 6 cut(s) 213, 352, 358, 374, 407, 446
CviKI_1 RGCY 6 cut(s) 213, 352, 358, 374, 407, 446
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 276, 359
DpnI GATC 2 cut(s) 228, 232
DpnII GATC 2 cut(s) 226, 230
EciI GGCGGA 1 cut(s) 300
Eco105I TACGTA 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 179, 353
Eco32I GATATC 2 cut(s) 38, 434
EcoRII CCWGG 1 cut(s) 106
EcoRV GATATC 2 cut(s) 38, 434
EcoT14I CCWWGG 2 cut(s) 179, 353
ErhI CCWWGG 2 cut(s) 179, 353
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 1 cut(s) 406
FaiI YATR 5 cut(s) 84, 206, 404, 420, 427
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 214, 297
FokI GGATG 2 cut(s) 38, 140
Fsp4HI GCNGC 2 cut(s) 214, 297
FspBI CTAG 2 cut(s) 180, 447
GlaI GCGC 1 cut(s) 270
GluI GCNGC 2 cut(s) 214, 297
GsaI CCCAGC 1 cut(s) 213
HgaI GACGC 1 cut(s) 294
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
Hpy188III TCNNGA 2 cut(s) 41, 92
HpyAV CCTTC 2 cut(s) 16, 71
HpyCH4III ACNGT 2 cut(s) 54, 262
HpyCH4IV ACGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 302
HpyF3I CTNAG 2 cut(s) 276, 359
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 226, 230
LpnPI CCDG 6 cut(s) 26, 93, 120, 223, 383, 395
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 162
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 2 cut(s) 180, 447
MaeII ACGT 1 cut(s) 321
MalI GATC 2 cut(s) 228, 232
MboI GATC 2 cut(s) 226, 230
MboII GAAGA 2 cut(s) 200, 379
MfeI CAATTG 1 cut(s) 145
MluCI AATT 2 cut(s) 145, 236
MnlI CCTC 1 cut(s) 67
MseI TTAA 2 cut(s) 312, 332
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 277, 302
NdeII GATC 2 cut(s) 226, 230
NlaIII CATG 1 cut(s) 406
NspV TTCGAA 1 cut(s) 48
PctI GAATGC 1 cut(s) 298
PkrI GCNGC 2 cut(s) 215, 298
Ppu21I YACGTR 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 106
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 312, 332
SatI GCNGC 2 cut(s) 214, 297
Sau3AI GATC 2 cut(s) 226, 230
ScrFI CCNGG 1 cut(s) 108
SetI ASST 4 cut(s) 112, 181, 324, 448
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 48
SnaBI TACGTA 1 cut(s) 322
Sse9I AATT 2 cut(s) 145, 236
SsiI CCGC 4 cut(s) 168, 214, 267, 285
SspMI CTAG 2 cut(s) 180, 447
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 179, 353
TaaI ACNGT 2 cut(s) 54, 262
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 48, 229
TasI AATT 2 cut(s) 145, 236
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 216
Tru1I TTAA 2 cut(s) 312, 332
Tru9I TTAA 2 cut(s) 312, 332
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 89
XapI RAATTY 1 cut(s) 236
XmaJI CCTAGG 1 cut(s) 179
XspI CTAG 2 cut(s) 180, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.