pycom14g00960

xylogalacturonan metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011385
Physical Location & Seq
Forward (+)
660324 .. 661163
840 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGCGGGCTCCAGATATGGCATACATAGCGGAGGCGATTCAGGATTTGAGAGGTGGCTTTGTTCGGCAAGAGTTGTTCTATCTTCTACAAGACGAAAAAGATGTTCATTTCACGTTTGGGAGTGTTCAAGAAGATGGAATCGACAAGGCCTCCCAGGGTATGCACACCTCCAAATTCTGCCTCAACATTGCCGGTGACACCCCATCATCAAATCGCCTCTTTGACGCTATTGCTAGCCACTGTGTCCCCGTCATCATCAGTCATGATATTGAACTTCCGGATGCTCTTAAGCAGAACTTTCTCGTAAACCTCACCAGGAACATTGGGAGGGACGAGTGGACGCGAATGTGGAAGAAGTTGCAGGAGGTTCAGAAATTCTATGAGTTTCAGTTTCCGTCAAGGGAGGGCGATGCTGTCCAGATGATATGGCAAGCAGTTGCTCGCAGAGTTCCGGCTATCAGAATGAAGTTATACAAGTCTAGACGATTCTCTCGAACAGTTTCTCAGAAGGAGACGGGGTTAAGCAGGATACCATCACCAAGTAACTTTTGGTAA

Protein Analysis

185

Amino Acids

21.3

Weight (kDa)

8.93

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 11 - 95 1e-17 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45400
fragaria_vesca FvH4_4g14300 FvH4_4g14300
malus_domestica MD12G1013400.v1.1 MD14G1010900.v1.1
prunus_persica Prupe.7G017800_v2.0.a1 Prupe.7G017800_v2.0.a1
pyrus_communis pycom12g01070 pycom14g00930 pycom14g00960
rosa_chinensis RchiOBHm_Chr3g0495831
rosa_laevigata RLG00000022585
rosa_multiflora Rmu_ssc0000254.1_g000003
rosa_roxburghii Rroxscaffold_6G00389980
rosa_rugosa Rorug03G0276800
rosa_samantha Rh3AG324100 Rh3BG360100 Rh3CG356500 Rh3DG359500
rosa_wichuraiana Rw3G028340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 343
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 2 cut(s) 4, 29
AcsI RAATTY 2 cut(s) 173, 374
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 128, 272
AjnI CCWGG 2 cut(s) 153, 314
Alw26I GTCTC 1 cut(s) 506
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 173, 374
Asp700I GAANNNNTTC 1 cut(s) 499
AsuHPI GGTGA 3 cut(s) 206, 304, 528
AsuNHI GCTAGC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 10
BccI CCATC 3 cut(s) 128, 211, 541
BciT130I CCWGG 2 cut(s) 155, 316
BciVI GTATCC 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 2 cut(s) 234, 480
BfrI CTTAAG 1 cut(s) 287
BfuI GTATCC 1 cut(s) 522
Bme1390I CCNGG 2 cut(s) 155, 316
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 155, 316
BmsI GCATC 2 cut(s) 271, 400
BmtI GCTAGC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 153, 154
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 503, 533
Bse118I RCCGGY 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 2 cut(s) 155, 316
BseDI CCNNGG 2 cut(s) 153, 154
BseGI GGATG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 3 cut(s) 192, 278, 452
BslFI GGGAC 2 cut(s) 230, 344
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 230, 344
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 277
BspACI CCGC 2 cut(s) 4, 29
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 517
BspEI TCCGGA 1 cut(s) 277
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 9
BspOI GCTAGC 1 cut(s) 237
BspTI CTTAAG 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 153, 154
Bst2UI CCWGG 2 cut(s) 155, 316
Bst4CI ACNGT 2 cut(s) 242, 499
BstAFI CTTAAG 1 cut(s) 287
BstC8I GCNNGC 4 cut(s) 6, 235, 432, 442
BstDEI CTNAG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 506
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 2 cut(s) 155, 316
BstSCI CCNGG 2 cut(s) 153, 314
BstUI CGCG 1 cut(s) 343
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 4 cut(s) 6, 235, 432, 442
CciI TCATGA 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 191
CseI GACGC 2 cut(s) 233, 349
CviAII CATG 1 cut(s) 263
CviJI RGCY 5 cut(s) 8, 57, 149, 237, 455
CviKI_1 RGCY 5 cut(s) 8, 57, 149, 237, 455
DdeI CTNAG 1 cut(s) 504
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 153, 314
EcoT38I GRGCYC 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 1 cut(s) 266
FaiI YATR 8 cut(s) 17, 22, 26, 161, 264, 381, 427, 472
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FaqI GGGAC 2 cut(s) 230, 344
FatI CATG 1 cut(s) 262
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 10
FspBI CTAG 2 cut(s) 234, 480
HaeIII GGCC 1 cut(s) 149
HapII CCGG 3 cut(s) 192, 278, 452
HgaI GACGC 2 cut(s) 233, 349
Hin1II CATG 1 cut(s) 266
HinfI GANTC 3 cut(s) 37, 138, 486
HpaII CCGG 3 cut(s) 192, 278, 452
HphI GGTGA 3 cut(s) 206, 304, 528
Hpy166II GTNNAC 2 cut(s) 307, 339
Hpy188I TCNGA 3 cut(s) 372, 461, 507
Hpy188III TCNNGA 8 cut(s) 11, 41, 128, 263, 278, 418, 480, 492
Hpy8I GTNNAC 2 cut(s) 307, 339
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 2 cut(s) 242, 499
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 163, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 1 cut(s) 266
Kpn2I TCCGGA 1 cut(s) 277
LmnI GCTCC 1 cut(s) 13
LweI GCATC 2 cut(s) 271, 400
MaeI CTAG 2 cut(s) 234, 480
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 194, 542
MboII GAAGA 3 cut(s) 74, 143, 364
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 173, 374
MroI TCCGGA 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 2 cut(s) 288, 521
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 3 cut(s) 192, 278, 452
MspR9I CCNGG 2 cut(s) 155, 316
MvaI CCWGG 2 cut(s) 155, 316
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 26
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 194
PagI TCATGA 1 cut(s) 262
PasI CCCWGGG 1 cut(s) 154
PceI AGGCCT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 3 cut(s) 37, 138, 486
Psp6I CCWGG 2 cut(s) 153, 314
PspGI CCWGG 2 cut(s) 153, 314
PspN4I GGNNCC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 288, 521
ScrFI CCNGG 2 cut(s) 155, 316
SduI GDGCHC 1 cut(s) 10
SetI ASST 5 cut(s) 55, 116, 170, 312, 369
SfaNI GCATC 2 cut(s) 271, 400
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 173, 374
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 2 cut(s) 4, 29
SspMI CTAG 2 cut(s) 234, 480
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 153, 314
TaaI ACNGT 2 cut(s) 242, 499
TaiI ACGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 141, 493
TasI AATT 2 cut(s) 173, 374
TfiI GAWTC 3 cut(s) 37, 138, 486
Tru1I TTAA 2 cut(s) 288, 521
Tru9I TTAA 2 cut(s) 288, 521
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 95, 479
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 287
XapI RAATTY 2 cut(s) 173, 374
XbaI TCTAGA 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 2 cut(s) 234, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.