Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015184

Physical Location & Seq

Genomic Coordinates Forward (+)

1760379 .. 1761569

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGCTGCGCTTCATCGAAACTGTTCAAGAAAGAAGATAACAATGGCGGCGGTGAATACGTCATCAACCACGTCGTCTCTCTCACTTCCAGCACTTACGGCGTTCTGAACCTCGAAAACGGCCAACAACCCATCAAAGACGGCCTTGCGGAGAGCAAGAGGGCCGCGATGAAATCTTCGCCGCCCCGGGAAGATCCGGAGGTTATCAACGCCTGGGAACTCATGGAGGGGCTCGAAGAAGGAATACCCATCTCGAATCCGACGAAGAAGAGCCCGAAATCGGGTGCGCTACTTCGGGGGTTTGCAGATTTCGGTTCGAGGACTCCGTTCAAGTTGTTGAGTCAGATCGGGTCGCCGATGAAATCGAAGCGATTTGGAGGGAAGGAGAATAATAAAGAGAGAGTGGTGAATGTTAATGTGTTGGGTTATAGCCCGAAACAGGTTCTGAAACCGAACAATGGCGGCGAAAATTCGTGTAAGAAGATGTTGAATTGGAGCCCTGGAGTAAAAGGGTCGCCCGTTGCGGTGAAAAGGCAGAGCTTTGGCAGCGATTTGTCGCGACGGAGGAGTTTAAGTCCCCTGTTTGATCCGGAACTCGTTGCATCTTACGAGAAGGAAATGTCTAAGGAGGAAGAGCACATCAAGAGGATGGTTCCACCGTCACCAAGGCCCCGTAAATTGAGAAATTCTTCCAAGGATTCGGAGTCTATGCTGCAATTATTTGAGAAAAAATGCCCACCGGGCGGCGAGAATGCAGTTGTTGTGTACACCACTACACTGAGAGGAATTAGGAAGACTTTTGAGGATTGCAACAATTTGAGGTCCATCGTGGAGTCACACCTAGTTCATGTTCTCGAGCGTGATATATCGATGGATTCTGGTTTTAAGGAGGAGATAAGGAGGCTAATGGGGACCAAGGAGGTTAAAGTTCCACTTGTATTTGTGAAGGGGAGGCTGATTGGCGGCGCCGACGAGGTGGTGAAGTTAGAGGAGGAAGGTAAGCTTGGAATTCTGTTTGATGGGATTCCGAGGGCGGTCATCGGATGCCAAGGCTGTGCCGGAATGAGATTTGTGATGTGCATGGTTTGCAATGGAAGCTGCAAAGTTTTGGATAAGGTGCAAAAGAAGATGGTGAAATGCGGTGAGTGCAATGAGAACGGTTTGATTCACTGTCCACTTTGTTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

397

Amino Acids

43.58

Weight (kDa)

9.17

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	253 - 320	1.5e-09	Glutaredoxin
GRXCR1-2_C	PF23733	349 - 395	1.8e-16	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03870
fragaria_vesca	FvH4_6g18880
malus_domestica	MD12G1024900.v1.1 MD14G1023700.v1.1
prunus_persica	Prupe.7G109100_v2.0.a1
pyrus_communis	pycom14g02270
rosa_chinensis	RchiOBHm_Chr3g0473861
rosa_laevigata	RLG00000023977
rosa_multiflora	Rmu_sc0002414.1_g000046
rosa_roxburghii	Rroxscaffold_6G00407710
rosa_rugosa	Rorug03G0136100
rosa_samantha	Rh3AG186600 Rh3BG215200 Rh3CG211900 Rh3DG211100
rosa_wichuraiana	Rw3G017070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	965
AccII	CGCG	2 cut(s)	167, 559
AccIII	TCCGGA	2 cut(s)	196, 589
AclWI	GGATC	2 cut(s)	188, 581
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	3 cut(s)	469, 685, 1008
AcyI	GRCGYC	1 cut(s)	966
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	5 cut(s)	280, 281, 439, 458, 743
AgsI	TTSAA	3 cut(s)	28, 331, 490
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	212, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	987, 1019
AluBI	AGCT	4 cut(s)	540, 1003, 1098, 1188
AluI	AGCT	4 cut(s)	540, 1003, 1098, 1188
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	188, 581
AlwNI	CAGNNNCTG	1 cut(s)	445
Ama87I	CYCGRG	2 cut(s)	186, 854
Aor13HI	TCCGGA	2 cut(s)	196, 589
AoxI	GGCC	4 cut(s)	121, 142, 162, 668
ApeKI	GCWGC	5 cut(s)	6, 546, 712, 1098, 1185
ApoI	RAATTY	3 cut(s)	469, 685, 1008
Asp700I	GAANNNNTTC	2 cut(s)	23, 688
AspLEI	GCGC	3 cut(s)	11, 289, 968
AspS9I	GGNCC	4 cut(s)	162, 669, 822, 912
AsuC2I	CCSGG	3 cut(s)	187, 188, 741
AsuHPI	GGTGA	7 cut(s)	65, 418, 538, 654, 991, 1144, 1154
AvaI	CYCGRG	2 cut(s)	186, 854
AvaII	GGWCC	2 cut(s)	822, 912
BanI	GGYRCC	1 cut(s)	965
BanII	GRGCYC	3 cut(s)	234, 275, 500
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	558, 699, 1085
BccI	CCATC	7 cut(s)	140, 257, 643, 833, 865, 1013, 1123
BceAI	ACGGC	3 cut(s)	115, 136, 157
BciT130I	CCWGG	2 cut(s)	214, 501
BcnI	CCSGG	3 cut(s)	187, 188, 741
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	969
BglI	GCCNNNNNGGC	1 cut(s)	741
Bme1390I	CCNGG	5 cut(s)	187, 188, 214, 501, 741
Bme18I	GGWCC	2 cut(s)	822, 912
BmeT110I	CYCGRG	2 cut(s)	186, 854
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	162, 669, 822, 912
BmiI	GGNNCC	5 cut(s)	497, 654, 671, 913, 967
BmrFI	CCNGG	5 cut(s)	187, 188, 214, 501, 741
BmsI	GCATC	2 cut(s)	611, 1034
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	522
BpuMI	CCSGG	3 cut(s)	187, 188, 741
Bsa29I	ATCGAT	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	966
BsaJI	CCNNGG	9 cut(s)	185, 186, 213, 499, 665, 693, 915, 1028, 1048
BsaWI	WCCGGW	2 cut(s)	196, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	5 cut(s)	280, 281, 439, 458, 743
Bse3DI	GCAATG	2 cut(s)	1096, 1156
BseAI	TCCGGA	2 cut(s)	196, 589
BseBI	CCWGG	2 cut(s)	214, 501
BseCI	ATCGAT	1 cut(s)	869
BseDI	CCNNGG	9 cut(s)	185, 186, 213, 499, 665, 693, 915, 1028, 1048
BseGI	GGATG	2 cut(s)	654, 1049
BseLI	CCNNNNNNNGG	5 cut(s)	280, 281, 439, 458, 743
BseMI	GCAATG	2 cut(s)	1096, 1156
BseMII	CTCAG	1 cut(s)	770
BseRI	GAGGAG	3 cut(s)	580, 905, 1004
BseXI	GCAGC	3 cut(s)	558, 699, 1085
Bsh1236I	CGCG	2 cut(s)	167, 559
BshFI	GGCC	4 cut(s)	123, 144, 164, 670
BshNI	GGYRCC	1 cut(s)	965
BshVI	ATCGAT	1 cut(s)	869
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	2 cut(s)	186, 854
BsiSI	CCGG	5 cut(s)	187, 197, 590, 740, 1059
BslFI	GGGAC	2 cut(s)	561, 925
BslI	CCNNNNNNNGG	5 cut(s)	280, 281, 439, 458, 743
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	561, 925
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	4 cut(s)	123, 144, 164, 670
BsoBI	CYCGRG	2 cut(s)	186, 854
Bsp1286I	GDGCHC	4 cut(s)	234, 275, 500, 639
Bsp13I	TCCGGA	2 cut(s)	196, 589
Bsp1407I	TGTACA	1 cut(s)	765
Bsp143I	GATC	3 cut(s)	193, 345, 586
Bsp68I	TCGCGA	1 cut(s)	559
BspANI	GGCC	4 cut(s)	123, 144, 164, 670
BspCNI	CTCAG	1 cut(s)	771
BspDI	ATCGAT	1 cut(s)	869
BspEI	TCCGGA	2 cut(s)	196, 589
BspFNI	CGCG	2 cut(s)	167, 559
BspLI	GGNNCC	5 cut(s)	497, 654, 671, 913, 967
BspPI	GGATC	2 cut(s)	188, 581
BspQI	GCTCTTC	2 cut(s)	263, 627
BspT107I	GGYRCC	1 cut(s)	965
BsrDI	GCAATG	2 cut(s)	1096, 1156
BsrGI	TGTACA	1 cut(s)	765
BssECI	CCNNGG	9 cut(s)	185, 186, 213, 499, 665, 693, 915, 1028, 1048
BssMI	GATC	3 cut(s)	193, 345, 586
BssNI	GRCGYC	1 cut(s)	966
BssT1I	CCWWGG	4 cut(s)	665, 693, 915, 1048
Bst2UI	CCWGG	2 cut(s)	214, 501
Bst4CI	ACNGT	4 cut(s)	24, 660, 1160, 1172
Bst6I	CTCTTC	2 cut(s)	263, 627
BstACI	GRCGYC	1 cut(s)	966
BstAPI	GCANNNNNTGC	1 cut(s)	1086
BstAUI	TGTACA	1 cut(s)	765
BstDEI	CTNAG	2 cut(s)	624, 779
BstF5I	GGATG	2 cut(s)	654, 1049
BstFNI	CGCG	2 cut(s)	167, 559
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	3 cut(s)	11, 289, 968
BstKTI	GATC	3 cut(s)	196, 348, 589
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	193, 345, 586
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 546, 741, 1086, 1095, 1146
BstNI	CCWGG	2 cut(s)	214, 501
BstSCI	CCNGG	5 cut(s)	185, 186, 212, 499, 739
BstUI	CGCG	2 cut(s)	167, 559
BstV1I	GCAGC	3 cut(s)	558, 699, 1085
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	869
BsuRI	GGCC	4 cut(s)	123, 144, 164, 670
BsuTUI	ATCGAT	1 cut(s)	869
BtgZI	GCGATG	1 cut(s)	182
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	654, 1049
BtsIMutI	CAGTG	2 cut(s)	776, 1168
BtuMI	TCGCGA	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	3 cut(s)	11, 289, 968
Cfr13I	GGNCC	4 cut(s)	162, 669, 822, 912
Cfr9I	CCCGGG	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	869
Csp6I	GTAC	1 cut(s)	766
CviAII	CATG	3 cut(s)	223, 848, 1081
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	2 cut(s)	624, 779
DinI	GGCGCC	1 cut(s)	967
DpnI	GATC	3 cut(s)	195, 347, 588
DpnII	GATC	3 cut(s)	193, 345, 586
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	263, 627
EarI	CTCTTC	2 cut(s)	263, 627
Eco130I	CCWWGG	4 cut(s)	665, 693, 915, 1048
Eco24I	GRGCYC	3 cut(s)	234, 275, 500
Eco47I	GGWCC	2 cut(s)	822, 912
Eco88I	CYCGRG	2 cut(s)	186, 854
EcoO109I	RGGNCCY	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	1008
EcoRII	CCWGG	2 cut(s)	212, 499
EcoT14I	CCWWGG	4 cut(s)	665, 693, 915, 1048
EcoT38I	GRGCYC	3 cut(s)	234, 275, 500
EgeI	GGCGCC	1 cut(s)	967
EheI	GGCGCC	1 cut(s)	967
ErhI	CCWWGG	4 cut(s)	665, 693, 915, 1048
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	3 cut(s)	226, 851, 1084
FaiI	YATR	6 cut(s)	224, 429, 710, 849, 866, 1082
FalI	AAGNNNNNCTT	6 cut(s)	129, 161, 918, 950, 987, 1019
FaqI	GGGAC	2 cut(s)	561, 925
FatI	CATG	3 cut(s)	222, 847, 1080
FokI	GGATG	2 cut(s)	661, 1056
FriOI	GRGCYC	3 cut(s)	234, 275, 500
FspBI	CTAG	1 cut(s)	842
GlaI	GCGC	3 cut(s)	10, 288, 967
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	969
HaeIII	GGCC	4 cut(s)	123, 144, 164, 670
HapII	CCGG	5 cut(s)	187, 197, 590, 740, 1059
HhaI	GCGC	3 cut(s)	11, 289, 968
Hin1I	GRCGYC	1 cut(s)	966
Hin1II	CATG	3 cut(s)	226, 851, 1084
Hin6I	GCGC	3 cut(s)	9, 287, 966
HinP1I	GCGC	3 cut(s)	9, 287, 966
HindIII	AAGCTT	1 cut(s)	1001
HinfI	GANTC	9 cut(s)	256, 322, 340, 698, 704, 833, 875, 1024, 1165
HpaII	CCGG	5 cut(s)	187, 197, 590, 740, 1059
HphI	GGTGA	7 cut(s)	65, 418, 538, 654, 991, 1144, 1154
Hpy166II	GTNNAC	3 cut(s)	766, 768, 1175
Hpy188I	TCNGA	7 cut(s)	108, 261, 345, 447, 703, 1029, 1043
Hpy188III	TCNNGA	7 cut(s)	28, 197, 253, 558, 590, 643, 854
Hpy8I	GTNNAC	3 cut(s)	766, 768, 1175
Hpy99I	CGWCG	4 cut(s)	77, 265, 564, 974
HpyAV	CCTTC	5 cut(s)	233, 376, 607, 940, 989
HpyCH4III	ACNGT	4 cut(s)	24, 660, 1160, 1172
HpyCH4IV	ACGT	2 cut(s)	60, 72
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 546, 741, 1086, 1095, 1146
HpyF3I	CTNAG	2 cut(s)	624, 779
HpySE526I	ACGT	2 cut(s)	60, 72
Hsp92I	GRCGYC	1 cut(s)	966
Hsp92II	CATG	3 cut(s)	226, 851, 1084
HspAI	GCGC	3 cut(s)	9, 287, 966
KasI	GGCGCC	1 cut(s)	965
Kpn2I	TCCGGA	2 cut(s)	196, 589
Kzo9I	GATC	3 cut(s)	193, 345, 586
LguI	GCTCTTC	2 cut(s)	263, 627
LmnI	GCTCC	1 cut(s)	495
Lsp1109I	GCAGC	3 cut(s)	558, 699, 1085
LweI	GCATC	2 cut(s)	611, 1034
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	2 cut(s)	60, 72
MaeIII	GTNAC	2 cut(s)	660, 834
MalI	GATC	3 cut(s)	195, 347, 588
MboI	GATC	3 cut(s)	193, 345, 586
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	4 cut(s)	234, 275, 500, 639
MluCI	AATT	8 cut(s)	469, 490, 677, 685, 716, 786, 814, 1008
Mly113I	GGCGCC	1 cut(s)	966
MlyI	GAGTC	4 cut(s)	316, 349, 713, 842
MmeI	TCCRAC	1 cut(s)	284
MroI	TCCGGA	2 cut(s)	196, 589
MroXI	GAANNNNTTC	2 cut(s)	23, 688
MseI	TTAA	4 cut(s)	414, 572, 885, 924
MspI	CCGG	5 cut(s)	187, 197, 590, 740, 1059
MspR9I	CCNGG	5 cut(s)	187, 188, 214, 501, 741
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	2 cut(s)	214, 501
MvnI	CGCG	2 cut(s)	167, 559
MwoI	GCNNNNNNNGC	6 cut(s)	99, 546, 741, 1086, 1095, 1146
NarI	GGCGCC	1 cut(s)	966
NciI	CCSGG	3 cut(s)	187, 188, 741
NdeII	GATC	3 cut(s)	193, 345, 586
NlaIII	CATG	3 cut(s)	226, 851, 1084
NlaIV	GGNNCC	5 cut(s)	497, 654, 671, 913, 967
NmuCI	GTSAC	2 cut(s)	660, 834
NruI	TCGCGA	1 cut(s)	559
PaeR7I	CTCGAG	1 cut(s)	854
PciSI	GCTCTTC	2 cut(s)	263, 627
PcsI	WCGNNNNNNNCGW	2 cut(s)	260, 323
PctI	GAATGC	1 cut(s)	757
PdmI	GAANNNNTTC	2 cut(s)	23, 688
PfeI	GAWTC	5 cut(s)	256, 698, 875, 1024, 1165
PleI	GAGTC	4 cut(s)	316, 348, 712, 841
PluTI	GGCGCC	1 cut(s)	969
PpsI	GAGTC	4 cut(s)	316, 348, 712, 841
Psp6I	CCWGG	2 cut(s)	212, 499
PspGI	CCWGG	2 cut(s)	212, 499
PspN4I	GGNNCC	5 cut(s)	497, 654, 671, 913, 967
PspPI	GGNCC	4 cut(s)	162, 669, 822, 912
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	193
RruI	TCGCGA	1 cut(s)	559
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
SapI	GCTCTTC	2 cut(s)	263, 627
SaqAI	TTAA	4 cut(s)	414, 572, 885, 924
Sau3AI	GATC	3 cut(s)	193, 345, 586
Sau96I	GGNCC	4 cut(s)	162, 669, 822, 912
SchI	GAGTC	4 cut(s)	316, 349, 713, 842
ScrFI	CCNGG	5 cut(s)	187, 188, 214, 501, 741
SduI	GDGCHC	4 cut(s)	234, 275, 500, 639
SfaNI	GCATC	2 cut(s)	611, 1034
SfoI	GGCGCC	1 cut(s)	967
Sfr274I	CTCGAG	1 cut(s)	854
SinI	GGWCC	2 cut(s)	822, 912
SlaI	CTCGAG	1 cut(s)	854
SmaI	CCCGGG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	8 cut(s)	469, 490, 677, 685, 716, 786, 814, 1008
SspDI	GGCGCC	1 cut(s)	965
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	5 cut(s)	185, 186, 212, 499, 739
StyI	CCWWGG	4 cut(s)	665, 693, 915, 1048
TaaI	ACNGT	4 cut(s)	24, 660, 1160, 1172
TaiI	ACGT	2 cut(s)	63, 75
TaqI	TCGA	8 cut(s)	17, 114, 234, 254, 317, 365, 855, 869
TasI	AATT	8 cut(s)	469, 490, 677, 685, 716, 786, 814, 1008
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	6 cut(s)	51, 167, 184, 465, 747, 966
TfiI	GAWTC	5 cut(s)	256, 698, 875, 1024, 1165
Tru1I	TTAA	4 cut(s)	414, 572, 885, 924
Tru9I	TTAA	4 cut(s)	414, 572, 885, 924
TscAI	CASTG	2 cut(s)	783, 1175
TseFI	GTSAC	2 cut(s)	660, 834
TseI	GCWGC	5 cut(s)	6, 546, 712, 1098, 1185
Tsp45I	GTSAC	2 cut(s)	660, 834
TspDTI	ATGAA	3 cut(s)	185, 374, 836
TspGWI	ACGGA	2 cut(s)	315, 577
TspMI	CCCGGG	1 cut(s)	186
TspRI	CASTG	2 cut(s)	783, 1175
VpaK11BI	GGWCC	2 cut(s)	822, 912
XapI	RAATTY	3 cut(s)	469, 685, 1008
XhoI	CTCGAG	1 cut(s)	854
XmaI	CCCGGG	1 cut(s)	186
XmnI	GAANNNNTTC	2 cut(s)	23, 688
XspI	CTAG	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.