pycom14g09210
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013052
Physical Location & Seq
Reverse (-)
10828665 .. 10829951
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1200 bp
ATGGAAGCAAATGGGCTGTTTTCTGGAATGCTTGGCCTAGAAATGCCCTTGCACCAAAATCCCCAAAACCCCCCAAATCCCCAAAACCCTCACAACCCTATGCACCAACCCCAAATGGTTCCCTATGCCCCCCACCATGACCCTGACCCCCACCAAAACCCTCACCAATCTGTGAAACAGGGCTACCCATTTGCCCCCAAATCCAAGCAGATTGCCCTGAGTGACGATGACGAACCCGGTTTCGGTGCTGATGACAAGAGGAAGATATCGCCGTGGCAGAGAATGAAGTGGACCGACACCATGGCGTCCGATGGCCCTGATCCTACGGGCAAGAAGAAGCCTGCTGGTGGATTGCTGCAGAAGAAGGGGAAGTGGAAATCGGTGTCCCGGGCTATGATGGAGAAGGGTTTCTATGTGTCTCCTCAGCAGTGTGAGGATAAGTTCAATGACTTGAACAAGAGGTATAAGAGGGTCAATGATATTCTTGGAAAGGGGACGGCCTGCCGGGTTGTGGAGAATCAGGGCTTGTTGGAAAAGATGGATTTGGCACCGAAGATGAAGGAAGAAGTTCGTAAATTGTTGAATTCGAAGCACCTGTTTTTCAGAGAAATGTGTGCTTATCATAACAGTTGCGGTCATGGAACTGTTGGTGGCGCGTCGAATGGTGCGCATAACTCACCGCCGGAGGCGGCCACAGAGCCGTCTGAGATTCCACCGCAGCAGCAGCAGCAGAGGTGCTTTCATTCATCAGAAAATGCCCAAGCGGTTGCCAATTCAGGAAGGTCAGAGACTGAGGGATCCAAAATGGTAGTAGGAGGAAGTGGCGGCGAGGACGAAGATGAAGACGACGAGGATGATGATTCTGTGGACGAAGATGATGAAGAGGAGGACGAGGTGGTTGGAGGTGGTTGTAGAGGTCAAATTGGGCATGGAAATCACGAAGATGACGATGACAACAATGATGAAAGAGCGCCGCGGAAAATGGCAAGAAAGGAAGGGTGCCGTGCGGGGTCCGCCTCATCGAGCCAATTAATGCAGCAACTGAGCTGCGAGATGAGGGTTGTGATGCAAGATGTGACGAAGACCCCGTGGGAGAAGCAGCAGTGGTTGAAAACAAGGCTGATACAATTGGAGGAACAGCAAGTGAGCTACCAATACCAAGCTTTCGAGCTCGAGAAGCAGAGGCTAAACCAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

400

Amino Acids

44.63

Weight (kDa)

5.33

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 119 - 171 2.5e-12 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10040
fragaria_vesca FvH4_6g17470
malus_domestica MD12G1096800.v1.1 MD14G1094300.v1.1
prunus_persica Prupe.7G120800_v2.0.a1
pyrus_communis pycom12g09810 pycom14g09210
rosa_chinensis RchiOBHm_Chr3g0471711
rosa_laevigata RLG00000024140
rosa_multiflora Rmu_sc0005631.1_g000025 Rmu_sc0026537.1_g000004
rosa_roxburghii Rroxscaffold_6G00409620
rosa_rugosa Rorug03G0118900
rosa_samantha Rh3AG170500 Rh3BG196200 Rh3CG186900 Rh3DG178800
rosa_wichuraiana Rw0G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 669
AccB1I GGYRCC 2 cut(s) 547, 999
AccII CGCG 2 cut(s) 656, 976
AclWI GGATC 3 cut(s) 314, 792, 805
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 1 cut(s) 583
AcyI GRCGYC 1 cut(s) 305
AfiI CCNNNNNNNGG 3 cut(s) 242, 347, 511
AgsI TTSAA 4 cut(s) 445, 454, 583, 1111
AluBI AGCT 5 cut(s) 1047, 1149, 1163, 1171, 1196
AluI AGCT 5 cut(s) 1047, 1149, 1163, 1171, 1196
Alw21I GWGCWC 1 cut(s) 1173
Alw26I GTCTC 2 cut(s) 423, 782
AlwI GGATC 3 cut(s) 314, 792, 805
AlwNI CAGNNNCTG 2 cut(s) 791, 1042
Ama87I CYCGRG 2 cut(s) 387, 1172
AoxI GGCC 4 cut(s) 34, 313, 498, 690
ApeKI GCWGC 8 cut(s) 355, 718, 721, 724, 727, 1036, 1047, 1099
ApoI RAATTY 1 cut(s) 583
AseI ATTAAT 1 cut(s) 1031
Asp700I GAANNNNTTC 2 cut(s) 407, 567
AspLEI GCGC 3 cut(s) 656, 670, 973
AspS9I GGNCC 3 cut(s) 291, 314, 1011
AsuC2I CCSGG 4 cut(s) 237, 388, 389, 506
AsuHPI GGTGA 2 cut(s) 155, 669
AsuII TTCGAA 1 cut(s) 587
AvaI CYCGRG 2 cut(s) 387, 1172
AvaII GGWCC 2 cut(s) 291, 1011
BamHI GGATCC 1 cut(s) 797
BanI GGYRCC 2 cut(s) 547, 999
BanII GRGCYC 1 cut(s) 1173
BbsI GAAGAC 2 cut(s) 849, 1088
Bbv12I GWGCWC 1 cut(s) 1173
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 8 cut(s) 342, 730, 733, 736, 739, 1034, 1048, 1111
BccI CCATC 3 cut(s) 305, 391, 532
BceAI ACGGC 4 cut(s) 256, 513, 685, 987
BcnI CCSGG 4 cut(s) 237, 388, 389, 506
BcoDI GTCTC 2 cut(s) 423, 782
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 974
Bme1390I CCNGG 4 cut(s) 237, 388, 389, 506
Bme18I GGWCC 2 cut(s) 291, 1011
BmeT110I CYCGRG 2 cut(s) 387, 1172
BmgT120I GGNCC 3 cut(s) 291, 314, 1011
BmiI GGNNCC 5 cut(s) 120, 549, 799, 1001, 1012
BmrFI CCNGG 4 cut(s) 237, 388, 389, 506
BmsI GCATC 1 cut(s) 1056
BpiI GAAGAC 2 cut(s) 849, 1088
Bpu10I CCTNAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 587
BpuMI CCSGG 4 cut(s) 237, 388, 389, 506
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 5 cut(s) 272, 300, 387, 974, 1088
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 347, 511
BseDI CCNNGG 5 cut(s) 272, 300, 387, 974, 1088
BseGI GGATG 1 cut(s) 859
BseLI CCNNNNNNNGG 3 cut(s) 242, 347, 511
BseMII CTCAG 5 cut(s) 209, 437, 696, 783, 1034
BseRI GAGGAG 2 cut(s) 411, 899
BseXI GCAGC 8 cut(s) 342, 730, 733, 736, 739, 1034, 1048, 1111
Bsh1236I CGCG 2 cut(s) 656, 976
BshFI GGCC 4 cut(s) 36, 315, 500, 692
BshNI GGYRCC 2 cut(s) 547, 999
BsiHKAI GWGCWC 1 cut(s) 1173
BsiHKCI CYCGRG 2 cut(s) 387, 1172
BsiSI CCGG 4 cut(s) 237, 388, 505, 683
BslFI GGGAC 2 cut(s) 370, 508
BslI CCNNNNNNNGG 3 cut(s) 242, 347, 511
BsmAI GTCTC 2 cut(s) 423, 782
BsmFI GGGAC 2 cut(s) 370, 508
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 4 cut(s) 36, 315, 500, 692
BsoBI CYCGRG 2 cut(s) 387, 1172
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 1173
Bsp143I GATC 2 cut(s) 319, 797
Bsp19I CCATGG 1 cut(s) 300
BspANI GGCC 4 cut(s) 36, 315, 500, 692
BspCNI CTCAG 5 cut(s) 210, 436, 697, 784, 1035
BspFNI CGCG 2 cut(s) 656, 976
BspLI GGNNCC 5 cut(s) 120, 549, 799, 1001, 1012
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 3 cut(s) 314, 792, 805
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 2 cut(s) 547, 999
BssECI CCNNGG 5 cut(s) 272, 300, 387, 974, 1088
BssMI GATC 2 cut(s) 319, 797
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 629, 646
Bst6I CTCTTC 1 cut(s) 876
BstACI GRCGYC 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 342, 502
BstDEI CTNAG 5 cut(s) 218, 423, 705, 792, 1043
BstDSI CCRYGG 4 cut(s) 272, 300, 974, 1088
BstF5I GGATG 1 cut(s) 859
BstFNI CGCG 2 cut(s) 656, 976
BstH2I RGCGCY 1 cut(s) 974
BstHHI GCGC 3 cut(s) 656, 670, 973
BstKTI GATC 2 cut(s) 322, 800
BstMAI GTCTC 2 cut(s) 423, 782
BstMBI GATC 2 cut(s) 319, 797
BstMWI GCNNNNNNNGC 4 cut(s) 724, 727, 1013, 1177
BstSCI CCNGG 4 cut(s) 235, 386, 387, 504
BstSFI CTRYAG 1 cut(s) 356
BstUI CGCG 2 cut(s) 656, 976
BstV1I GCAGC 8 cut(s) 342, 730, 733, 736, 739, 1034, 1048, 1111
BstV2I GAAGAC 2 cut(s) 849, 1088
BstX2I RGATCY 1 cut(s) 797
BstYI RGATCY 1 cut(s) 797
BsuRI GGCC 4 cut(s) 36, 315, 500, 692
BtgI CCRYGG 4 cut(s) 272, 300, 974, 1088
BtsCI GGATG 1 cut(s) 859
BtsI GCAGTG 2 cut(s) 434, 1109
BtsIMutI CAGTG 2 cut(s) 434, 1109
Cac8I GCNNGC 2 cut(s) 342, 502
CaiI CAGNNNCTG 2 cut(s) 791, 1042
CfoI GCGC 3 cut(s) 656, 670, 973
Cfr13I GGNCC 3 cut(s) 291, 314, 1011
Cfr42I CCGCGG 1 cut(s) 977
Cfr9I CCCGGG 1 cut(s) 387
CseI GACGC 2 cut(s) 294, 645
CviAII CATG 4 cut(s) 137, 301, 638, 929
DdeI CTNAG 5 cut(s) 218, 423, 705, 792, 1043
DpnI GATC 2 cut(s) 321, 799
DpnII GATC 2 cut(s) 319, 797
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
EciI GGCGGA 1 cut(s) 1003
Ecl136II GAGCTC 1 cut(s) 1171
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 1173
Eco32I GATATC 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 291, 1011
Eco53kI GAGCTC 1 cut(s) 1171
Eco88I CYCGRG 2 cut(s) 387, 1172
EcoICRI GAGCTC 1 cut(s) 1171
EcoRI GAATTC 1 cut(s) 583
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 1173
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 140, 304, 641, 932
FaqI GGGAC 2 cut(s) 370, 508
FatI CATG 4 cut(s) 136, 300, 637, 928
FauI CCCGC 1 cut(s) 1000
FokI GGATG 1 cut(s) 866
FriOI GRGCYC 1 cut(s) 1173
FspAI RTGCGCAY 1 cut(s) 669
FspBI CTAG 1 cut(s) 38
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 3 cut(s) 655, 669, 972
HaeII RGCGCY 1 cut(s) 974
HaeIII GGCC 4 cut(s) 36, 315, 500, 692
HapII CCGG 4 cut(s) 237, 388, 505, 683
HgaI GACGC 2 cut(s) 294, 645
HhaI GCGC 3 cut(s) 656, 670, 973
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 4 cut(s) 140, 304, 641, 932
Hin6I GCGC 3 cut(s) 654, 668, 971
HinP1I GCGC 3 cut(s) 654, 668, 971
HindIII AAGCTT 2 cut(s) 1161, 1194
HinfI GANTC 3 cut(s) 517, 709, 860
HpaII CCGG 4 cut(s) 237, 388, 505, 683
HphI GGTGA 2 cut(s) 155, 669
Hpy166II GTNNAC 2 cut(s) 291, 868
Hpy188I TCNGA 5 cut(s) 310, 605, 706, 751, 787
Hpy188III TCNNGA 4 cut(s) 24, 777, 938, 1174
Hpy8I GTNNAC 2 cut(s) 291, 868
Hpy99I CGWCG 2 cut(s) 661, 851
HpyAV CCTTC 5 cut(s) 358, 397, 553, 774, 989
HpyCH4III ACNGT 2 cut(s) 629, 646
HpyCH4V TGCA 5 cut(s) 52, 103, 358, 1036, 1069
HpyF10VI GCNNNNNNNGC 4 cut(s) 724, 727, 1013, 1177
HpyF3I CTNAG 5 cut(s) 218, 423, 705, 792, 1043
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 4 cut(s) 140, 304, 641, 932
HspAI GCGC 3 cut(s) 654, 668, 971
KspI CCGCGG 1 cut(s) 977
Kzo9I GATC 2 cut(s) 319, 797
Lsp1109I GCAGC 8 cut(s) 342, 730, 733, 736, 739, 1034, 1048, 1111
LweI GCATC 1 cut(s) 1056
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 221, 1075
MalI GATC 2 cut(s) 321, 799
MboI GATC 2 cut(s) 319, 797
MfeI CAATTG 1 cut(s) 1127
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 1 cut(s) 1173
MluCI AATT 6 cut(s) 575, 583, 772, 921, 1028, 1127
MmeI TCCRAC 2 cut(s) 510, 880
MroXI GAANNNNTTC 2 cut(s) 407, 567
MseI TTAA 1 cut(s) 1031
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 976
MspI CCGG 4 cut(s) 237, 388, 505, 683
MspR9I CCNGG 4 cut(s) 237, 388, 389, 506
MunI CAATTG 1 cut(s) 1127
Mva1269I GAATGC 1 cut(s) 33
MvnI CGCG 2 cut(s) 656, 976
MwoI GCNNNNNNNGC 4 cut(s) 724, 727, 1013, 1177
NciI CCSGG 4 cut(s) 237, 388, 389, 506
NcoI CCATGG 1 cut(s) 300
NdeII GATC 2 cut(s) 319, 797
NlaIII CATG 4 cut(s) 140, 304, 641, 932
NlaIV GGNNCC 5 cut(s) 120, 549, 799, 1001, 1012
NmuCI GTSAC 2 cut(s) 221, 1075
NsbI TGCGCA 1 cut(s) 669
NspV TTCGAA 1 cut(s) 587
PaeR7I CTCGAG 1 cut(s) 1172
PcsI WCGNNNNNNNCGW 2 cut(s) 945, 1085
PctI GAATGC 1 cut(s) 33
PdmI GAANNNNTTC 2 cut(s) 407, 567
PfeI GAWTC 3 cut(s) 517, 709, 860
PshBI ATTAAT 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 1173
PspN4I GGNNCC 5 cut(s) 120, 549, 799, 1001, 1012
PspPI GGNCC 3 cut(s) 291, 314, 1011
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 2 cut(s) 791, 1042
PsuI RGATCY 1 cut(s) 797
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 1 cut(s) 1173
SacII CCGCGG 1 cut(s) 977
SaqAI TTAA 1 cut(s) 1031
Sau3AI GATC 2 cut(s) 319, 797
Sau96I GGNCC 3 cut(s) 291, 314, 1011
ScrFI CCNGG 4 cut(s) 237, 388, 389, 506
SduI GDGCHC 1 cut(s) 1173
SfaNI GCATC 1 cut(s) 1056
SfcI CTRYAG 1 cut(s) 356
Sfr274I CTCGAG 1 cut(s) 1172
Sfr303I CCGCGG 1 cut(s) 977
SfuI TTCGAA 1 cut(s) 587
SgrBI CCGCGG 1 cut(s) 977
SinI GGWCC 2 cut(s) 291, 1011
SlaI CTCGAG 1 cut(s) 1172
SmaI CCCGGG 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
Sse9I AATT 6 cut(s) 575, 583, 772, 921, 1028, 1127
SspMI CTAG 1 cut(s) 38
SstI GAGCTC 1 cut(s) 1173
StyD4I CCNGG 4 cut(s) 235, 386, 387, 504
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 629, 646
TaqI TCGA 5 cut(s) 587, 659, 1022, 1167, 1173
TaqII GACCGA 1 cut(s) 308
TasI AATT 6 cut(s) 575, 583, 772, 921, 1028, 1127
TauI GCSGC 3 cut(s) 692, 828, 976
TfiI GAWTC 3 cut(s) 517, 709, 860
Tru1I TTAA 1 cut(s) 1031
Tru9I TTAA 1 cut(s) 1031
TscAI CASTG 2 cut(s) 434, 1109
TseFI GTSAC 2 cut(s) 221, 1075
TseI GCWGC 8 cut(s) 355, 718, 721, 724, 727, 1036, 1047, 1099
Tsp45I GTSAC 2 cut(s) 221, 1075
TspDTI ATGAA 7 cut(s) 299, 572, 731, 735, 855, 894, 978
TspMI CCCGGG 1 cut(s) 387
TspRI CASTG 2 cut(s) 434, 1109
VpaK11BI GGWCC 2 cut(s) 291, 1011
VspI ATTAAT 1 cut(s) 1031
XapI RAATTY 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 1172
XmaI CCCGGG 1 cut(s) 387
XmnI GAANNNNTTC 2 cut(s) 407, 567
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.