Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009299

Physical Location & Seq

Genomic Coordinates Forward (+)

11515190 .. 11517421

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTCACTCTCTCTCATCATTCTCCTCCTTCTCTCTCCACCCAATCCCTCCTCCCAAACGCGCCGCCCCATTCCACTCCATCTCCTCCCTCAGAGCCTCCATTGACAACAAGGAACCCACCACCACAAACTCCAAACCCAGCTCATGGGTCAGCCCAAATTGGCTCACTTCGCTCACTCGCTCCCTCACCATTTCCAAAAACGACGACTCCGGCATCCCCATCGCCAGCGCTCAGCTCGAGGACGTGTCGGAGCTTCTGGGTGGCGCTCTGTTTCTGCCGCTGTTCAAATGGATGAACGAGTATGGTCCGATTTACCGGCTCGCCGCCGGGCCGAGAAATTTCCTTGTGGTCAGTGACCCTGCCATTGCTAAGCACGTGCTTAGGAATTACGGGAAGTACGCGAAGGGACTTGTTGCTGAGGTCTCTGAGTTTTTGTTCGGCTCTGGTTTTGCAATCGCTGAAGGCCCGCTTTGGACGGCGAGGCGCAGGGCTGTGGTGCCATCTCTTCATAAGAAGTACTTGTCCGTGATAGTAGATCGAGTATTTTGCAAATGTGCTGAGAGATTAGTGGAGAAGCTACAACGTGATGCACTTAATGGAACTGCTGTAAACATGGAGGACAGATTTTCTCAGTTAACTCTTGATGTTATAGGCCTGTCTTTGTTCAACTACAATTTCAATTCGCTAAATGCTTATAGCCCGGTTATTGAGTCTGTTTACACTGCATTGAAAGAGGCTGAGCTTCGCTCTACTGATATATTACCATATTGGAAGGTTGATGTTTTGCGGAAGATAATCCCAAGACAAATAAAAGCTGAAAAAGCAGTTCAAGTGATCAGGAGTTCTGTTGAAGAACTTATAGCTAAGTGCAAAGAAATTGTGGAAGCTGAGGGCGAAAGAATTGATGAGGAAGAATATATAAATGACACTGATCCAAGCATCCTTCGCTTTTTGCTTGCAAGTAGAGAAGAGGTATCAAGTGAGCAATTGCGGGATCGATCTTTTGTCTATGTTGGTTGCTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009974 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0072374 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

344

Amino Acids

38.46

Weight (kDa)

6.98

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	95 - 328	1.9e-22	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53130
fragaria_vesca	FvH4_6g17140 FvH4_6g17140 FvH4_6g17140 FvH4_6g17140
malus_domestica	MD14G1097800.v1.1
prunus_persica	Prupe.7G123500_v2.0.a1
pyrus_communis	pycom12g10190 pycom14g09530 pycom14g09540
rosa_chinensis	RchiOBHm_Chr3g0471231
rosa_laevigata	RLG00000024195
rosa_multiflora	Rmu_sc0004870.1_g000001 Rmu_sc0023334.1_g000001 Rmu_sc0035386.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410190
rosa_rugosa	Rorug03G0116300
rosa_samantha	Rh3AG165500 Rh3BG191000 Rh3CG181300 Rh3DG184700
rosa_wichuraiana	Rw3G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccII	CGCG	2 cut(s)	63, 404
AciI	CCGC	6 cut(s)	66, 281, 327, 470, 790, 994
AclWI	GGATC	2 cut(s)	929, 1005
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	483
AcvI	CACGTG	1 cut(s)	379
AfaI	GTAC	2 cut(s)	401, 521
AfeI	AGCGCT	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	6 cut(s)	289, 670, 682, 733, 833, 854
AjiI	CACGTC	1 cut(s)	247
AluBI	AGCT	8 cut(s)	144, 238, 256, 580, 745, 818, 866, 890
AluI	AGCT	8 cut(s)	144, 238, 256, 580, 745, 818, 866, 890
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	929, 1005
Ama87I	CYCGRG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	232
AoxI	GGCC	3 cut(s)	332, 466, 655
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	4 cut(s)	65, 233, 269, 489
AspS9I	GGNCC	3 cut(s)	308, 332, 467
AsuC2I	CCSGG	2 cut(s)	331, 704
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	379
BbvCI	CCTCAGC	2 cut(s)	420, 891
BccI	CCATC	3 cut(s)	89, 230, 511
BceAI	ACGGC	1 cut(s)	495
BcgI	CGANNNNNNTGC	4 cut(s)	205, 239, 531, 565
BclI	TGATCA	1 cut(s)	837
BcnI	CCSGG	2 cut(s)	331, 704
BcoDI	GTCTC	1 cut(s)	430
BfoI	RGCGCY	2 cut(s)	234, 270
BisI	GCNGC	3 cut(s)	66, 281, 327
BlpI	GCTNAGC	3 cut(s)	234, 372, 741
BlsI	GCNGC	3 cut(s)	67, 282, 328
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	331, 704
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	308, 332, 467
BmiI	GGNNCC	2 cut(s)	117, 501
BmrFI	CCNGG	2 cut(s)	331, 704
BmsI	GCATC	3 cut(s)	225, 580, 951
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
Bpu10I	CCTNAGC	3 cut(s)	383, 420, 891
Bpu1102I	GCTNAGC	3 cut(s)	234, 372, 741
BpuMI	CCSGG	2 cut(s)	331, 704
Bsa29I	ATCGAT	1 cut(s)	1000
BsaAI	YACGTR	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	366
BseCI	ATCGAT	1 cut(s)	1000
BseGI	GGATG	3 cut(s)	216, 300, 942
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	8 cut(s)	106, 248, 411, 420, 552, 647, 732, 882
BseRI	GAGGAG	3 cut(s)	16, 42, 76
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	63, 404
BshFI	GGCC	3 cut(s)	334, 468, 657
BshNI	GGYRCC	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	1000
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	213, 319, 330, 704
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	334, 468, 657
Bso31I	GGTCTC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	538, 837, 934, 997, 1001
Bsp1720I	GCTNAGC	3 cut(s)	234, 372, 741
BspACI	CCGC	6 cut(s)	66, 281, 327, 470, 790, 994
BspANI	GGCC	3 cut(s)	334, 468, 657
BspCNI	CTCAG	8 cut(s)	105, 247, 412, 421, 553, 646, 733, 883
BspDI	ATCGAT	1 cut(s)	1000
BspFNI	CGCG	2 cut(s)	63, 404
BspLI	GGNNCC	2 cut(s)	117, 501
BspPI	GGATC	2 cut(s)	929, 1005
BspT107I	GGYRCC	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	318
BssMI	GATC	5 cut(s)	538, 837, 934, 997, 1001
Bst6I	CTCTTC	2 cut(s)	513, 966
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	4 cut(s)	229, 324, 470, 960
BstF5I	GGATG	3 cut(s)	216, 300, 942
BstFNI	CGCG	2 cut(s)	63, 404
BstH2I	RGCGCY	2 cut(s)	234, 270
BstHHI	GCGC	4 cut(s)	65, 233, 269, 489
BstKTI	GATC	5 cut(s)	541, 840, 937, 1000, 1004
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	5 cut(s)	538, 837, 934, 997, 1001
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 824, 948
BstSCI	CCNGG	2 cut(s)	329, 702
BstUI	CGCG	2 cut(s)	63, 404
Bsu15I	ATCGAT	1 cut(s)	1000
BsuRI	GGCC	3 cut(s)	334, 468, 657
BsuTUI	ATCGAT	1 cut(s)	1000
BtgZI	GCGATG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	216, 300, 942
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	3 cut(s)	361, 723, 930
Cac8I	GCNNGC	4 cut(s)	229, 324, 470, 960
CfoI	GCGC	4 cut(s)	65, 233, 269, 489
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	3 cut(s)	308, 332, 467
ClaI	ATCGAT	1 cut(s)	1000
Csp6I	GTAC	2 cut(s)	400, 520
CviAII	CATG	3 cut(s)	147, 616, 1029
CviQI	GTAC	2 cut(s)	400, 520
DpnI	GATC	5 cut(s)	540, 839, 936, 999, 1003
DpnII	GATC	5 cut(s)	538, 837, 934, 997, 1001
Eam1104I	CTCTTC	2 cut(s)	513, 966
EarI	CTCTTC	2 cut(s)	513, 966
Eco147I	AGGCCT	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	308
Eco47III	AGCGCT	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	483
Eco72I	CACGTG	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	239
FaeI	CATG	3 cut(s)	150, 619, 1032
FalI	AAGNNNNNCTT	4 cut(s)	456, 488, 506, 538
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	3 cut(s)	146, 615, 1028
FauI	CCCGC	2 cut(s)	477, 987
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	66, 281, 327
FokI	GGATG	3 cut(s)	203, 307, 929
Fsp4HI	GCNGC	3 cut(s)	66, 281, 327
GlaI	GCGC	4 cut(s)	64, 232, 268, 488
GluI	GCNGC	3 cut(s)	66, 281, 327
GsaI	CCCAGC	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	234, 270
HaeIII	GGCC	3 cut(s)	334, 468, 657
HapII	CCGG	4 cut(s)	213, 319, 330, 704
HhaI	GCGC	4 cut(s)	65, 233, 269, 489
Hin1II	CATG	3 cut(s)	150, 619, 1032
Hin6I	GCGC	4 cut(s)	63, 231, 267, 487
HinP1I	GCGC	4 cut(s)	63, 231, 267, 487
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	2 cut(s)	209, 713
HpaI	GTTAAC	1 cut(s)	639
HpaII	CCGG	4 cut(s)	213, 319, 330, 704
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	613, 639, 721
Hpy188I	TCNGA	4 cut(s)	95, 253, 312, 430
Hpy188III	TCNNGA	2 cut(s)	644, 841
Hpy8I	GTNNAC	3 cut(s)	613, 639, 721
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	5 cut(s)	40, 400, 458, 769, 956
HpyCH4IV	ACGT	3 cut(s)	246, 378, 586
HpyCH4V	TGCA	6 cut(s)	455, 552, 593, 728, 873, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 824, 948
HpySE526I	ACGT	3 cut(s)	246, 378, 586
Hsp92II	CATG	3 cut(s)	150, 619, 1032
HspAI	GCGC	4 cut(s)	63, 231, 267, 487
Ksp22I	TGATCA	1 cut(s)	837
KspAI	GTTAAC	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	538, 837, 934, 997, 1001
LmnI	GCTCC	2 cut(s)	188, 253
LweI	GCATC	3 cut(s)	225, 580, 951
MaeII	ACGT	3 cut(s)	246, 378, 586
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	5 cut(s)	540, 839, 936, 999, 1003
MboI	GATC	5 cut(s)	538, 837, 934, 997, 1001
MboII	GAAGA	5 cut(s)	500, 805, 866, 926, 983
MfeI	CAATTG	1 cut(s)	989
MluCI	AATT	8 cut(s)	160, 340, 388, 676, 682, 879, 903, 989
MlyI	GAGTC	2 cut(s)	203, 722
MmeI	TCCRAC	1 cut(s)	231
MseI	TTAA	2 cut(s)	597, 638
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	4 cut(s)	213, 319, 330, 704
MspR9I	CCNGG	2 cut(s)	331, 704
MunI	CAATTG	1 cut(s)	989
MvnI	CGCG	2 cut(s)	63, 404
MwoI	GCNNNNNNNGC	3 cut(s)	172, 824, 948
NciI	CCSGG	2 cut(s)	331, 704
NdeII	GATC	5 cut(s)	538, 837, 934, 997, 1001
NlaIII	CATG	3 cut(s)	150, 619, 1032
NlaIV	GGNNCC	2 cut(s)	117, 501
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	657
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	67, 282, 328
PleI	GAGTC	2 cut(s)	203, 721
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
PpsI	GAGTC	2 cut(s)	203, 721
Ppu21I	YACGTR	1 cut(s)	379
PspCI	CACGTG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	117, 501
PspPI	GGNCC	3 cut(s)	308, 332, 467
PspXI	VCTCGAGB	1 cut(s)	239
RsaI	GTAC	2 cut(s)	401, 521
RsaNI	GTAC	2 cut(s)	400, 520
SaqAI	TTAA	2 cut(s)	597, 638
SatI	GCNGC	3 cut(s)	66, 281, 327
Sau3AI	GATC	5 cut(s)	538, 837, 934, 997, 1001
Sau96I	GGNCC	3 cut(s)	308, 332, 467
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	2 cut(s)	203, 722
ScrFI	CCNGG	2 cut(s)	331, 704
SfaNI	GCATC	3 cut(s)	225, 580, 951
Sfr274I	CTCGAG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	8 cut(s)	160, 340, 388, 676, 682, 879, 903, 989
SseBI	AGGCCT	1 cut(s)	657
SsiI	CCGC	6 cut(s)	66, 281, 327, 470, 790, 994
StuI	AGGCCT	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	329, 702
TaiI	ACGT	3 cut(s)	249, 381, 589
TaqI	TCGA	3 cut(s)	240, 541, 1000
TasI	AATT	8 cut(s)	160, 340, 388, 676, 682, 879, 903, 989
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	3 cut(s)	68, 283, 329
Tru1I	TTAA	2 cut(s)	597, 638
Tru9I	TTAA	2 cut(s)	597, 638
TscAI	CASTG	3 cut(s)	361, 730, 937
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	311, 500
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	3 cut(s)	361, 730, 937
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.