Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023334.1

Orthogroup ID

OG0009299

Physical Location & Seq

Genomic Coordinates Forward (+)

573 .. 1115

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023334.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgcttagctctctccactctttctcatcattcactctcctccccactccttcttctcgaaaacccaccactccattccactccttctccatcagagcctcaaccaacaaggaccccagttcaaactccaagcccaccacaacctccaagccaagctcgtgggtcagccccgattggctcacttccctgaccagctccctgaccatatccaaaaacgacgactcgggcattcccgtcgcctccgccaagctcgatgacgtgtccgaccttctgggtggtgctctgttcttgcctctgttcaagtggatgaaccagtacggcccaatatacaggctggcggctgggcccagaaacttcgtggtggtcagtgaccctgctatcgctaaacatgtgcttaggaattatggcaagtacgccaagggtcttgttgccgaggtctccgagtttttgttcgggtcgggttttgctattgctgaaggcccactttggacggtaatgttgttcatgatcggatctttgcttggttttagatgttgggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009974 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0072374 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

180

Amino Acids

19.55

Weight (kDa)

9.48

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53130
fragaria_vesca	FvH4_6g17140 FvH4_6g17140 FvH4_6g17140 FvH4_6g17140
malus_domestica	MD14G1097800.v1.1
prunus_persica	Prupe.7G123500_v2.0.a1
pyrus_communis	pycom12g10190 pycom14g09530 pycom14g09540
rosa_chinensis	RchiOBHm_Chr3g0471231
rosa_laevigata	RLG00000024195
rosa_multiflora	Rmu_sc0004870.1_g000001 Rmu_sc0023334.1_g000001 Rmu_sc0035386.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410190
rosa_rugosa	Rorug03G0116300
rosa_samantha	Rh3AG165500 Rh3BG191000 Rh3CG181300 Rh3DG184700
rosa_wichuraiana	Rw3G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	243, 338
AclWI	GGATC	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	2 cut(s)	317, 413
AflIII	ACRYGT	2 cut(s)	258, 388
AgsI	TTSAA	2 cut(s)	123, 301
AjiI	CACGTC	1 cut(s)	259
AluBI	AGCT	4 cut(s)	9, 156, 195, 250
AluI	AGCT	4 cut(s)	9, 156, 195, 250
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	3 cut(s)	319, 344, 478
ApaI	GGGCCC	1 cut(s)	348
AspS9I	GGNCC	5 cut(s)	112, 320, 344, 345, 479
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	283
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcoDI	GTCTC	1 cut(s)	442
BisI	GCNGC	1 cut(s)	339
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	5 cut(s)	112, 320, 344, 345, 479
BmiI	GGNNCC	2 cut(s)	114, 346
BmrI	ACTGGG	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	417, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse1I	ACTGG	2 cut(s)	117, 313
BseDI	CCNNGG	2 cut(s)	417, 432
BseGI	GGATG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	117, 313
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	3 cut(s)	321, 346, 480
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	3 cut(s)	321, 346, 480
Bso31I	GGTCTC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	223
Bsp120I	GGGCCC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	283, 348
Bsp143I	GATC	2 cut(s)	507, 512
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	243, 338
BspANI	GGCC	3 cut(s)	321, 346, 480
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	114, 346
BspPI	GGATC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	117, 313
BssECI	CCNNGG	2 cut(s)	417, 432
BssMI	GATC	2 cut(s)	507, 512
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	5, 395
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	510, 515
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	507, 512
BstNSI	RCATGY	1 cut(s)	392
BstSLI	GKGCMC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	512
BsuRI	GGCC	3 cut(s)	321, 346, 480
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	336
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	5 cut(s)	112, 320, 344, 345, 479
Csp6I	GTAC	2 cut(s)	316, 412
CviAII	CATG	2 cut(s)	389, 505
CviQI	GTAC	2 cut(s)	316, 412
DdeI	CTNAG	2 cut(s)	5, 395
DpnI	GATC	2 cut(s)	509, 514
DpnII	GATC	2 cut(s)	507, 512
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	392, 508
FaiI	YATR	5 cut(s)	206, 328, 390, 405, 506
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FatI	CATG	2 cut(s)	388, 504
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	321, 346, 480
Hin1II	CATG	2 cut(s)	392, 508
HinfI	GANTC	1 cut(s)	221
Hpy188I	TCNGA	4 cut(s)	95, 265, 442, 512
Hpy188III	TCNNGA	2 cut(s)	57, 505
Hpy99I	CGWCG	2 cut(s)	221, 239
HpyAV	CCTTC	4 cut(s)	60, 94, 278, 470
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	5, 395
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	392, 508
Kzo9I	GATC	2 cut(s)	507, 512
LmnI	GCTCC	1 cut(s)	200
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	509, 514
MboI	GATC	2 cut(s)	507, 512
MboII	GAAGA	1 cut(s)	45
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	283, 348
MluCI	AATT	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	50, 109, 154, 250, 303, 427
Mva1269I	GAATGC	1 cut(s)	228
NdeII	GATC	2 cut(s)	507, 512
NlaIII	CATG	2 cut(s)	392, 508
NlaIV	GGNNCC	2 cut(s)	114, 346
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	392
PagI	TCATGA	1 cut(s)	504
PciI	ACATGT	1 cut(s)	388
PctI	GAATGC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	112
PscI	ACATGT	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	114, 346
PspOMI	GGGCCC	1 cut(s)	344
PspPI	GGNCC	5 cut(s)	112, 320, 344, 345, 479
PspPPI	RGGWCCY	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	2 cut(s)	317, 413
RsaNI	GTAC	2 cut(s)	316, 412
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	507, 512
Sau96I	GGNCC	5 cut(s)	112, 320, 344, 345, 479
SchI	GAGTC	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	283, 348
SetI	ASST	8 cut(s)	11, 146, 158, 197, 252, 261, 270, 438
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	400
SsiI	CCGC	2 cut(s)	243, 338
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	58, 252
TasI	AATT	1 cut(s)	400
TauI	GCSGC	1 cut(s)	341
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	323, 493
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.