Rorug03G0116300

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000142
Physical Location & Seq
Reverse (-)
9455705 .. 9456853
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0116300.1

Sequence Viewer

Length: 357 bp
ATGAACCATGTCAAGAATTTGACGACCCATGTCCAGAATTTAATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCTCCGGAGACCCAAGATAATAGCCTTCGTGGTCGGAGCCGCTCTCCAGCTCCGACGCCGTCGCTGGAATACCTATCAGATCATTGTTTTGACTCTTAACTATAATATGCAGAAACTTATTGGCATGGGAGGTGAAGGTGGAATGGATGGGACGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGCGATGATGAGTTCATGCATTCTTGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

118

Amino Acids

13.32

Weight (kDa)

9.36

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 155
AccIII TCCGGA 2 cut(s) 102, 117
AciI CCGC 1 cut(s) 153
AcsI RAATTY 2 cut(s) 16, 37
AcyI GRCGYC 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 51
AjiI CACGTC 1 cut(s) 54
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 115
Aor13HI TCCGGA 2 cut(s) 102, 117
ApoI RAATTY 2 cut(s) 16, 37
AsuHPI GGTGA 3 cut(s) 257, 308, 323
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 2 cut(s) 254, 293
BceAI ACGGC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 115
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 115
BsaWI WCCGGW 2 cut(s) 102, 117
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 312
BseAI TCCGGA 2 cut(s) 102, 117
BseGI GGATG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 91
BsiSI CCGG 2 cut(s) 103, 118
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 343
Bso31I GGTCTC 1 cut(s) 115
Bsp13I TCCGGA 2 cut(s) 102, 117
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 153
BspEI TCCGGA 2 cut(s) 102, 117
BspLI GGNNCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 91
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 286
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 192
BstPAI GACNNNNGTC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 286
CseI GACGC 1 cut(s) 177
CviAII CATG 5 cut(s) 8, 29, 238, 289, 340
CviJI RGCY 3 cut(s) 137, 152, 163
CviKI_1 RGCY 3 cut(s) 137, 152, 163
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 345
FaeI CATG 5 cut(s) 11, 32, 241, 292, 343
FaiI YATR 7 cut(s) 9, 30, 216, 221, 239, 290, 341
FaqI GGGAC 1 cut(s) 277
FatI CATG 5 cut(s) 7, 28, 237, 288, 339
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 143
HapII CCGG 2 cut(s) 103, 118
HgaI GACGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 5 cut(s) 11, 32, 241, 292, 343
HinfI GANTC 2 cut(s) 106, 205
HpaII CCGG 2 cut(s) 103, 118
HphI GGTGA 3 cut(s) 257, 308, 323
Hpy188I TCNGA 3 cut(s) 149, 167, 192
Hpy188III TCNNGA 5 cut(s) 13, 34, 103, 118, 274
Hpy99I CGWCG 2 cut(s) 171, 177
HpyAV CCTTC 2 cut(s) 148, 242
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 84, 223, 305, 343
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 5 cut(s) 11, 32, 241, 292, 343
Kpn2I TCCGGA 2 cut(s) 102, 117
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 149, 168
LpnPI CCDG 8 cut(s) 47, 86, 104, 116, 131, 163, 173, 270
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 194
MbiI CCGCTC 1 cut(s) 155
MboI GATC 1 cut(s) 192
MboII GAAGA 3 cut(s) 48, 53, 88
MluCI AATT 3 cut(s) 16, 37, 79
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 2 cut(s) 127, 190
MnlI CCTC 3 cut(s) 125, 236, 287
Mph1103I ATGCAT 1 cut(s) 345
MroI TCCGGA 2 cut(s) 102, 117
MseI TTAA 2 cut(s) 41, 210
MspI CCGG 2 cut(s) 103, 118
Mva1269I GAATGC 1 cut(s) 343
NdeII GATC 1 cut(s) 192
NlaIII CATG 5 cut(s) 11, 32, 241, 292, 343
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PshAI GACNNNNGTC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 41, 210
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 192
SchI GAGTC 1 cut(s) 199
SetI ASST 6 cut(s) 56, 165, 188, 247, 253, 298
Sse9I AATT 3 cut(s) 16, 37, 79
SsiI CCGC 1 cut(s) 153
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 275
TasI AATT 3 cut(s) 16, 37, 79
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 41, 210
Tru9I TTAA 2 cut(s) 41, 210
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 17, 328
TspGWI ACGGA 1 cut(s) 281
Tth111I GACNNNGTC 1 cut(s) 171
XapI RAATTY 2 cut(s) 16, 37
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.