RLG00000001284

Glycine-rich domain-containing protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000142
Physical Location & Seq
Forward (+)
13395615 .. 13396455
841 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001284

Sequence Viewer

Length: 738 bp
ATGTCAATGTCAATGACGAAGAAGGAGGAGGAACAAGAGGAGAGGTGGTCGAATGGACTTCCAGAACATATCTTGCAGTTGATACCACAAAGGCTATGCATATCAGATTACCAAGTTTTTCGCCAAGCATGCCCTAATTGGCGAGCCGCGGTTGATATAGGCATCGCCACCAAGACTTGCCCTCCCGCTCCGGAACTCCCATGGAAGAAAACTCGAGAAACTGAACAAAACTTCATGACAGCTATTGAAATCTCCACTGAGTATCCCTATGGAAAAGCAGTGGCTTTGCTCAATGTGACATCGGGATTCCTAGAGATCAAGGAAGAGTGGCTGTTATTGCCTTGGATCACATCAGCTTTCATACTTTCGGATGTTATGTCCGATGACGGCTATGATGGTTTCAGAAACTACCAGTGGAGAGAAGCAATCAGAATTTATTACTCAACAGACGTTGTTAACATTAAGCGCAATGAGAAAGAAAAAAGAGCCAATTTGTTCACTGCCTCGGAAAAAATGAAACTTGAGGGGGATAATGAGAGTTTAAACATATGGGAGGCCCTGGAAAAAGGTGGCTCATGTGGCCCTTATGAAGCTGGCTTTATCCCCTACAATATGACAAAAGGTAGCCATTGCGGAATAAGATGTGGCAGCTGTGGAGGTGGTTGTGGCAGTTGTGGCCAGTGCCGGGGTGCTCAGTGTGGGGGAGGCAAATGCAGTTCTAGTTGCGGTAGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRDP-like

Protein Analysis

246

Amino Acids

27.38

Weight (kDa)

5.62

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRDP_C PF25335 71 - 106 9.7e-11 Glycine Rich Domain Protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccII CGCG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 5 cut(s) 147, 149, 186, 633, 726
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 685
AgsI TTSAA 1 cut(s) 248
AjnI CCWGG 1 cut(s) 558
AluBI AGCT 4 cut(s) 242, 356, 593, 651
AluI AGCT 4 cut(s) 242, 356, 593, 651
Alw21I GWGCWC 1 cut(s) 694
AlwI GGATC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 213
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 3 cut(s) 555, 580, 676
ApeKI GCWGC 1 cut(s) 648
ApoI RAATTY 1 cut(s) 432
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 2 cut(s) 556, 581
AsuC2I CCSGG 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 213
BalI TGGCCA 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 1 cut(s) 660
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 560
BciVI GTATCC 1 cut(s) 273
BcnI CCSGG 1 cut(s) 686
BfaI CTAG 2 cut(s) 311, 720
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 2 cut(s) 147, 649
BlsI GCNGC 2 cut(s) 148, 650
Bme1390I CCNGG 2 cut(s) 560, 686
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 556, 581
BmrFI CCNGG 2 cut(s) 560, 686
BmsI GCATC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 686
BsaJI CCNNGG 6 cut(s) 147, 200, 341, 504, 558, 685
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse1I ACTGG 2 cut(s) 412, 679
Bse3DI GCAATG 2 cut(s) 475, 628
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 6 cut(s) 147, 200, 341, 504, 558, 685
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 685
BseMI GCAATG 2 cut(s) 475, 628
BseMII CTCAG 2 cut(s) 249, 707
BseNI ACTGG 2 cut(s) 412, 679
BseRI GAGGAG 2 cut(s) 41, 53
BseXI GCAGC 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 557, 582, 678
BsiHKAI GWGCWC 1 cut(s) 694
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 191, 685
BslI CCNNNNNNNGG 1 cut(s) 685
BsnI GGCC 3 cut(s) 557, 582, 678
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 694
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 2 cut(s) 315, 345
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 5 cut(s) 147, 149, 186, 633, 726
BspANI GGCC 3 cut(s) 557, 582, 678
BspCNI CTCAG 2 cut(s) 250, 706
BspEI TCCGGA 1 cut(s) 190
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 234
BspPI GGATC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 475, 628
BsrI ACTGG 2 cut(s) 412, 679
BssECI CCNNGG 6 cut(s) 147, 200, 341, 504, 558, 685
BssMI GATC 2 cut(s) 315, 345
BssT1I CCWWGG 2 cut(s) 200, 341
Bst2UI CCWGG 1 cut(s) 560
Bst6I CTCTTC 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 130, 144, 595
BstDEI CTNAG 2 cut(s) 258, 693
BstDSI CCRYGG 2 cut(s) 147, 200
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 2 cut(s) 318, 348
BstMBI GATC 2 cut(s) 315, 345
BstMWI GCNNNNNNNGC 4 cut(s) 129, 337, 579, 675
BstNI CCWGG 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 558, 684
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 660
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 3 cut(s) 557, 582, 678
BtgI CCRYGG 2 cut(s) 147, 200
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 2 cut(s) 285, 498
BtsIMutI CAGTG 6 cut(s) 255, 285, 419, 498, 686, 701
Cac8I GCNNGC 3 cut(s) 130, 144, 595
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 2 cut(s) 556, 581
Cfr42I CCGCGG 1 cut(s) 150
CviAII CATG 4 cut(s) 129, 201, 235, 576
DdeI CTNAG 2 cut(s) 258, 693
DpnI GATC 2 cut(s) 317, 347
DpnII GATC 2 cut(s) 315, 345
DraI TTTAAA 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 200, 341
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 558
EcoT14I CCWWGG 2 cut(s) 200, 341
EcoT22I ATGCAT 1 cut(s) 101
ErhI CCWWGG 2 cut(s) 200, 341
FaeI CATG 4 cut(s) 132, 204, 238, 579
FatI CATG 4 cut(s) 128, 200, 234, 575
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 548
Fnu4HI GCNGC 2 cut(s) 147, 649
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 147, 649
FspBI CTAG 2 cut(s) 311, 720
GlaI GCGC 1 cut(s) 467
GluI GCNGC 2 cut(s) 147, 649
HaeIII GGCC 3 cut(s) 557, 582, 678
HapII CCGG 2 cut(s) 191, 685
HhaI GCGC 1 cut(s) 468
Hin1II CATG 4 cut(s) 132, 204, 238, 579
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 1 cut(s) 306
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 2 cut(s) 191, 685
Hpy166II GTNNAC 2 cut(s) 457, 498
Hpy188I TCNGA 6 cut(s) 106, 370, 382, 404, 431, 508
Hpy188III TCNNGA 5 cut(s) 62, 191, 215, 235, 303
Hpy8I GTNNAC 2 cut(s) 457, 498
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 76, 99, 714
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 337, 579, 675
HpyF3I CTNAG 2 cut(s) 258, 693
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 4 cut(s) 132, 204, 238, 579
HspAI GCGC 1 cut(s) 466
Kpn2I TCCGGA 1 cut(s) 190
KspAI GTTAAC 1 cut(s) 457
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 315, 345
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 8 cut(s) 75, 204, 425, 545, 572, 579, 692, 698
Lsp1109I GCAGC 1 cut(s) 660
LweI GCATC 1 cut(s) 171
MaeI CTAG 2 cut(s) 311, 720
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 317, 347
MbiI CCGCTC 1 cut(s) 188
MboI GATC 2 cut(s) 315, 345
MboII GAAGA 3 cut(s) 31, 217, 335
MhlI GDGCHC 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 3 cut(s) 136, 432, 490
MluNI TGGCCA 1 cut(s) 678
Mox20I TGGCCA 1 cut(s) 678
Mph1103I ATGCAT 1 cut(s) 101
MroI TCCGGA 1 cut(s) 190
MscI TGGCCA 1 cut(s) 678
MseI TTAA 3 cut(s) 456, 462, 542
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 2 cut(s) 149, 651
MspI CCGG 2 cut(s) 191, 685
MspR9I CCNGG 2 cut(s) 560, 686
MssI GTTTAAAC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 560
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 129, 337, 579, 675
NciI CCSGG 1 cut(s) 686
NcoI CCATGG 1 cut(s) 200
NdeI CATATG 1 cut(s) 548
NdeII GATC 2 cut(s) 315, 345
NlaIII CATG 4 cut(s) 132, 204, 238, 579
NmuCI GTSAC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 101
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 213
PagI TCATGA 1 cut(s) 234
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 148, 650
PmeI GTTTAAAC 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 558
PspPI GGNCC 2 cut(s) 556, 581
PvuII CAGCTG 1 cut(s) 651
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 3 cut(s) 456, 462, 542
SatI GCNGC 2 cut(s) 147, 649
Sau3AI GATC 2 cut(s) 315, 345
Sau96I GGNCC 2 cut(s) 556, 581
ScrFI CCNGG 2 cut(s) 560, 686
SduI GDGCHC 1 cut(s) 694
SetI ASST 9 cut(s) 47, 244, 358, 453, 571, 595, 625, 653, 661
SfaNI GCATC 1 cut(s) 171
Sfr274I CTCGAG 1 cut(s) 213
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 213, 521
SmoI CTYRAG 2 cut(s) 213, 521
SphI GCATGC 1 cut(s) 132
Sse9I AATT 3 cut(s) 136, 432, 490
SsiI CCGC 5 cut(s) 147, 149, 186, 633, 726
SspMI CTAG 2 cut(s) 311, 720
StyD4I CCNGG 2 cut(s) 558, 684
StyI CCWWGG 2 cut(s) 200, 341
TaiI ACGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 50, 214
TasI AATT 3 cut(s) 136, 432, 490
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 3 cut(s) 456, 462, 542
Tru9I TTAA 3 cut(s) 456, 462, 542
TscAI CASTG 6 cut(s) 262, 285, 419, 505, 686, 701
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 648
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 4 cut(s) 223, 349, 530, 603
TspRI CASTG 6 cut(s) 262, 285, 419, 505, 686, 701
XapI RAATTY 1 cut(s) 432
XceI RCATGY 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 213
XspI CTAG 2 cut(s) 311, 720
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.