Rw2G041550

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
67577268 .. 67579633
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041550.1

Sequence Viewer

Length: 1206 bp
ATGTGTTTTTTTTATTTTGGTACGTGGTTAGGATCTCTTTCCTTGTGGTCTAAGAAACTCCCAGAAGATGTGATGCAATTGATTCTACAACGGCTGCTCATGTCAGATTATTTGAGTTGCCGTGACGTGTGCCGTTCTTGGCGAGCCGCAATTGACAGCAAGCGTTGTCTTCCTGCTAATCAACTCCCATGGCTTTTGATCGGTTCTCATCACTCATTCTACATCAAAGATGACTGCTTTGTGAGTGATCGGAAAATTTACGAACCAAAGAAATGGCGCACACATTACTGCTCGGATTGTGTTGGATCAATTGAGGGTTGGCTGATAATCGAAGGAACTGGACATGCATCAGTACTTCATCAGTTCTTCCTCTTGAACCCTGTATCAGGAGCTAGAATTATGCTCCCATCACATTCCGCACCTAATTACTTCTGCGGAATGAAAGCAGTAGCCTCTTCAGTACCAACAAAAACAATGTTGCAGCGGCGGCGGTGTTATGTGTCTTGCATTCACTTTGAAAAAGAAGGTGGTTTGGCTTTTTGTGCGCCCGCTGATAAATCATGGACCTTCGTTGAGGCCAATGCGGATCTAAAACTTGGAGATATAGAAATAGTTGATGGGAAATTATATGCGGTAGGTAGACACCCATTAAAGTTTTTAATGTTGTTTGACATCCAATTAGATTCCAATGGTGGCGGACTTCATACCTACACCACTGAAATGTTTATTACTCTTCACCCCAATGTCGAGAGAATAGTCAAATGCAGATACTCTAGTTTTTGGTCTGAAGTTGAAAACAGATTCTGCTATCAGTTCTGTTACCTAGCAAAAGGTTCTGAATCAAATGACTTGTTTCTGATTTTGCATAAGCGTGACTTTTTAAGTGGCAAGACCATAGGATTTCGGGTGTTGAAGTTGGAGAATAATGTTACTACTGGTCCTCAGTGGGTAGAGATTGTGGACCTTGGCGATCAGGTATTGTTTACGAGCGGGGTTAACAACAAGTTCATCTCTTCTGGCAGTGTTTCACATGATCAAGCCTTTGAAAGAAACTCTATCTATTTTGTTTTTGATTGGTATGAAACATGTGAATCTGGGGTGTTTTCCTTGACAAATAGGAGCATCAAACCTTTGAATTTTCCTAATAAGGAACAGTTGCATACGGGACTGGATCAGACTCTTTGGTTCACACCAAATCCTTGGTAG

Protein Analysis

401

Amino Acids

46.02

Weight (kDa)

7.53

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 1.1e-07 F-box domain
F-box-like PF12937 19 - 53 1.3e-07 F-box-like
Beta-prop_KIB1-4 PF03478 84 - 368 6.7e-31 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 990
AccI GTMKAC 1 cut(s) 640
AclWI GGATC 4 cut(s) 40, 313, 594, 1179
AcsI RAATTY 2 cut(s) 255, 1135
AcuI CTGAAG 2 cut(s) 441, 807
AfaI GTAC 3 cut(s) 22, 354, 462
AfiI CCNNNNNNNGG 1 cut(s) 386
AflIII ACRYGT 2 cut(s) 126, 1085
AgsI TTSAA 6 cut(s) 376, 518, 794, 913, 1046, 1135
AjiI CACGTC 1 cut(s) 127
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
AlwI GGATC 4 cut(s) 40, 313, 594, 1179
AlwNI CAGNNNCTG 1 cut(s) 804
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 94, 481
ApoI RAATTY 2 cut(s) 255, 1135
AspLEI GCGC 2 cut(s) 279, 547
AspS9I GGNCC 3 cut(s) 564, 938, 961
AsuHPI GGTGA 1 cut(s) 728
AvaII GGWCC 3 cut(s) 564, 938, 961
BaeI ACNNNNGTAYC 2 cut(s) 760, 793
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 81, 493
BccI CCATC 2 cut(s) 415, 611
BceAI ACGGC 3 cut(s) 105, 107, 117
BclI TGATCA 1 cut(s) 1033
BfaI CTAG 3 cut(s) 393, 774, 824
BisI GCNGC 5 cut(s) 95, 147, 482, 485, 488
BlsI GCNGC 5 cut(s) 96, 148, 483, 486, 489
BmcAI AGTACT 1 cut(s) 354
Bme18I GGWCC 3 cut(s) 564, 938, 961
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 564, 938, 961
BmsI GCATC 3 cut(s) 63, 356, 1131
BpiI GAAGAC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 188, 964, 1199
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 3 cut(s) 343, 940, 1173
BseDI CCNNGG 3 cut(s) 188, 964, 1199
BseGI GGATG 1 cut(s) 672
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 956
BseNI ACTGG 3 cut(s) 343, 940, 1173
BseXI GCAGC 2 cut(s) 81, 493
BshFI GGCC 1 cut(s) 578
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 1179
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 1 cut(s) 578
Bsp143I GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
Bsp19I CCATGG 1 cut(s) 188
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 1 cut(s) 955
BspPI GGATC 4 cut(s) 40, 313, 594, 1179
BsrBI CCGCTC 1 cut(s) 990
BsrI ACTGG 3 cut(s) 343, 940, 1173
BssECI CCNNGG 3 cut(s) 188, 964, 1199
BssMI GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
BssT1I CCWWGG 3 cut(s) 188, 964, 1199
Bst4CI ACNGT 1 cut(s) 1155
Bst6I CTCTTC 3 cut(s) 460, 738, 1018
BstBAI YACGTR 1 cut(s) 24
BstC8I GCNNGC 3 cut(s) 144, 161, 549
BstDEI CTNAG 2 cut(s) 51, 942
BstDSI CCRYGG 1 cut(s) 188
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 672
BstHHI GCGC 2 cut(s) 279, 547
BstKTI GATC 8 cut(s) 35, 201, 250, 308, 589, 973, 1036, 1174
BstMBI GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
BstMWI GCNNNNNNNGC 2 cut(s) 487, 542
BstNSI RCATGY 2 cut(s) 347, 1089
BstV1I GCAGC 2 cut(s) 81, 493
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 32, 586
BstXI CCANNNNNNTGG 2 cut(s) 273, 1200
BstYI RGATCY 2 cut(s) 32, 586
BsuRI GGCC 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 672
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 3 cut(s) 714, 950, 1027
Cac8I GCNNGC 3 cut(s) 144, 161, 549
CaiI CAGNNNCTG 1 cut(s) 804
CfoI GCGC 2 cut(s) 279, 547
Cfr13I GGNCC 3 cut(s) 564, 938, 961
Csp6I GTAC 3 cut(s) 21, 353, 461
CviAII CATG 6 cut(s) 100, 189, 344, 561, 1031, 1086
CviJI RGCY 9 cut(s) 94, 146, 193, 322, 392, 452, 536, 578, 1040
CviKI_1 RGCY 9 cut(s) 94, 146, 193, 322, 392, 452, 536, 578, 1040
CviQI GTAC 3 cut(s) 21, 353, 461
DdeI CTNAG 2 cut(s) 51, 942
DpnI GATC 8 cut(s) 34, 200, 249, 307, 588, 972, 1035, 1173
DpnII GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
Eam1104I CTCTTC 3 cut(s) 460, 738, 1018
EarI CTCTTC 3 cut(s) 460, 738, 1018
EciI GGCGGA 1 cut(s) 711
Eco130I CCWWGG 3 cut(s) 188, 964, 1199
Eco47I GGWCC 3 cut(s) 564, 938, 961
Eco57I CTGAAG 2 cut(s) 441, 807
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoT14I CCWWGG 3 cut(s) 188, 964, 1199
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 3 cut(s) 188, 964, 1199
FaeI CATG 6 cut(s) 103, 192, 347, 564, 1034, 1089
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FaqI GGGAC 1 cut(s) 1179
FatI CATG 6 cut(s) 99, 188, 343, 560, 1030, 1085
FauI CCCGC 2 cut(s) 556, 983
FbaI TGATCA 1 cut(s) 1033
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 5 cut(s) 95, 147, 482, 485, 488
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 5 cut(s) 95, 147, 482, 485, 488
FspBI CTAG 3 cut(s) 393, 774, 824
GlaI GCGC 2 cut(s) 278, 546
GluI GCNGC 5 cut(s) 95, 147, 482, 485, 488
HaeIII GGCC 1 cut(s) 578
HhaI GCGC 2 cut(s) 279, 547
Hin1II CATG 6 cut(s) 103, 192, 347, 564, 1034, 1089
Hin6I GCGC 2 cut(s) 277, 545
HinP1I GCGC 2 cut(s) 277, 545
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HinfI GANTC 6 cut(s) 82, 683, 801, 839, 1091, 1177
HpaI GTTAAC 1 cut(s) 997
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 5 cut(s) 641, 961, 984, 997, 1188
Hpy188I TCNGA 7 cut(s) 106, 252, 295, 787, 838, 858, 1176
Hpy188III TCNNGA 3 cut(s) 373, 387, 748
Hpy8I GTNNAC 5 cut(s) 641, 961, 984, 997, 1188
HpyAV CCTTC 3 cut(s) 326, 518, 577
HpyCH4III ACNGT 1 cut(s) 1155
HpyCH4IV ACGT 2 cut(s) 23, 126
HpyCH4V TGCA 7 cut(s) 76, 347, 481, 507, 765, 865, 1159
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 542
HpyF3I CTNAG 2 cut(s) 51, 942
HpySE526I ACGT 2 cut(s) 23, 126
Hsp92II CATG 6 cut(s) 103, 192, 347, 564, 1034, 1089
HspAI GCGC 2 cut(s) 277, 545
Ksp22I TGATCA 1 cut(s) 1033
KspAI GTTAAC 1 cut(s) 997
Kzo9I GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
LmnI GCTCC 3 cut(s) 389, 408, 1119
Lsp1109I GCAGC 2 cut(s) 81, 493
LweI GCATC 3 cut(s) 63, 356, 1131
MaeI CTAG 3 cut(s) 393, 774, 824
MaeII ACGT 2 cut(s) 23, 126
MaeIII GTNAC 4 cut(s) 122, 818, 872, 928
MalI GATC 8 cut(s) 34, 200, 249, 307, 588, 972, 1035, 1173
MbiI CCGCTC 1 cut(s) 990
MboI GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
MboII GAAGA 6 cut(s) 77, 161, 358, 447, 725, 1005
MfeI CAATTG 3 cut(s) 77, 150, 309
MflI RGATCY 2 cut(s) 32, 586
MluCI AATT 9 cut(s) 77, 150, 255, 309, 396, 424, 623, 677, 1135
MlyI GAGTC 1 cut(s) 1171
MmeI TCCRAC 2 cut(s) 283, 897
MnlI CCTC 5 cut(s) 307, 380, 463, 568, 951
Mph1103I ATGCAT 1 cut(s) 349
MseI TTAA 4 cut(s) 650, 659, 881, 996
MslI CAYNNNNRTG 3 cut(s) 719, 741, 870
MspA1I CMGCKG 2 cut(s) 484, 551
MunI CAATTG 3 cut(s) 77, 150, 309
Mva1269I GAATGC 1 cut(s) 507
MwoI GCNNNNNNNGC 2 cut(s) 487, 542
NcoI CCATGG 1 cut(s) 188
NdeII GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
NlaIII CATG 6 cut(s) 103, 192, 347, 564, 1034, 1089
NmuCI GTSAC 2 cut(s) 122, 872
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 2 cut(s) 347, 1089
PciI ACATGT 1 cut(s) 1085
PctI GAATGC 1 cut(s) 507
PfeI GAWTC 5 cut(s) 82, 683, 801, 839, 1091
PkrI GCNGC 5 cut(s) 96, 148, 483, 486, 489
PleI GAGTC 1 cut(s) 1171
PpsI GAGTC 1 cut(s) 1171
Ppu21I YACGTR 1 cut(s) 24
PscI ACATGT 1 cut(s) 1085
PspPI GGNCC 3 cut(s) 564, 938, 961
PstNI CAGNNNCTG 1 cut(s) 804
PsuI RGATCY 2 cut(s) 32, 586
RsaI GTAC 3 cut(s) 22, 354, 462
RsaNI GTAC 3 cut(s) 21, 353, 461
RseI CAYNNNNRTG 3 cut(s) 719, 741, 870
SaqAI TTAA 4 cut(s) 650, 659, 881, 996
SatI GCNGC 5 cut(s) 95, 147, 482, 485, 488
Sau3AI GATC 8 cut(s) 32, 198, 247, 305, 586, 970, 1033, 1171
Sau96I GGNCC 3 cut(s) 564, 938, 961
ScaI AGTACT 1 cut(s) 354
SchI GAGTC 1 cut(s) 1171
SfaNI GCATC 3 cut(s) 63, 356, 1131
SinI GGWCC 3 cut(s) 564, 938, 961
SmiMI CAYNNNNRTG 3 cut(s) 719, 741, 870
Sse9I AATT 9 cut(s) 77, 150, 255, 309, 396, 424, 623, 677, 1135
SspMI CTAG 3 cut(s) 393, 774, 824
StyI CCWWGG 3 cut(s) 188, 964, 1199
TaaI ACNGT 1 cut(s) 1155
TaiI ACGT 2 cut(s) 26, 129
TaqI TCGA 2 cut(s) 330, 747
TasI AATT 9 cut(s) 77, 150, 255, 309, 396, 424, 623, 677, 1135
TatI WGTACW 1 cut(s) 352
TauI GCSGC 3 cut(s) 149, 487, 490
TfiI GAWTC 5 cut(s) 82, 683, 801, 839, 1091
Tru1I TTAA 4 cut(s) 650, 659, 881, 996
Tru9I TTAA 4 cut(s) 650, 659, 881, 996
TscAI CASTG 3 cut(s) 721, 950, 1027
TseFI GTSAC 2 cut(s) 122, 872
TseI GCWGC 2 cut(s) 94, 481
Tsp45I GTSAC 2 cut(s) 122, 872
TspDTI ATGAA 5 cut(s) 347, 455, 692, 997, 1095
TspRI CASTG 3 cut(s) 721, 950, 1027
VpaK11BI GGWCC 3 cut(s) 564, 938, 961
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 2 cut(s) 255, 1135
XceI RCATGY 2 cut(s) 347, 1089
XmiI GTMKAC 1 cut(s) 640
XspI CTAG 3 cut(s) 393, 774, 824
ZrmI AGTACT 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.