Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 990 |
| AccI | GTMKAC | 1 cut(s) | 640 |
| AclWI | GGATC | 4 cut(s) | 40, 313, 594, 1179 |
| AcsI | RAATTY | 2 cut(s) | 255, 1135 |
| AcuI | CTGAAG | 2 cut(s) | 441, 807 |
| AfaI | GTAC | 3 cut(s) | 22, 354, 462 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 386 |
| AflIII | ACRYGT | 2 cut(s) | 126, 1085 |
| AgsI | TTSAA | 6 cut(s) | 376, 518, 794, 913, 1046, 1135 |
| AjiI | CACGTC | 1 cut(s) | 127 |
| AluBI | AGCT | 1 cut(s) | 392 |
| AluI | AGCT | 1 cut(s) | 392 |
| AlwI | GGATC | 4 cut(s) | 40, 313, 594, 1179 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 804 |
| AoxI | GGCC | 1 cut(s) | 576 |
| ApeKI | GCWGC | 2 cut(s) | 94, 481 |
| ApoI | RAATTY | 2 cut(s) | 255, 1135 |
| AspLEI | GCGC | 2 cut(s) | 279, 547 |
| AspS9I | GGNCC | 3 cut(s) | 564, 938, 961 |
| AsuHPI | GGTGA | 1 cut(s) | 728 |
| AvaII | GGWCC | 3 cut(s) | 564, 938, 961 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 760, 793 |
| BbsI | GAAGAC | 1 cut(s) | 161 |
| BbvI | GCAGC | 2 cut(s) | 81, 493 |
| BccI | CCATC | 2 cut(s) | 415, 611 |
| BceAI | ACGGC | 3 cut(s) | 105, 107, 117 |
| BclI | TGATCA | 1 cut(s) | 1033 |
| BfaI | CTAG | 3 cut(s) | 393, 774, 824 |
| BisI | GCNGC | 5 cut(s) | 95, 147, 482, 485, 488 |
| BlsI | GCNGC | 5 cut(s) | 96, 148, 483, 486, 489 |
| BmcAI | AGTACT | 1 cut(s) | 354 |
| Bme18I | GGWCC | 3 cut(s) | 564, 938, 961 |
| BmgBI | CACGTC | 1 cut(s) | 127 |
| BmgT120I | GGNCC | 3 cut(s) | 564, 938, 961 |
| BmsI | GCATC | 3 cut(s) | 63, 356, 1131 |
| BpiI | GAAGAC | 1 cut(s) | 161 |
| BsaAI | YACGTR | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 3 cut(s) | 188, 964, 1199 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 386 |
| Bse1I | ACTGG | 3 cut(s) | 343, 940, 1173 |
| BseDI | CCNNGG | 3 cut(s) | 188, 964, 1199 |
| BseGI | GGATG | 1 cut(s) | 672 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 386 |
| BseMII | CTCAG | 1 cut(s) | 956 |
| BseNI | ACTGG | 3 cut(s) | 343, 940, 1173 |
| BseXI | GCAGC | 2 cut(s) | 81, 493 |
| BshFI | GGCC | 1 cut(s) | 578 |
| BslFI | GGGAC | 1 cut(s) | 1179 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 386 |
| BsmFI | GGGAC | 1 cut(s) | 1179 |
| BsmI | GAATGC | 1 cut(s) | 507 |
| BsnI | GGCC | 1 cut(s) | 578 |
| Bsp143I | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspANI | GGCC | 1 cut(s) | 578 |
| BspCNI | CTCAG | 1 cut(s) | 955 |
| BspPI | GGATC | 4 cut(s) | 40, 313, 594, 1179 |
| BsrBI | CCGCTC | 1 cut(s) | 990 |
| BsrI | ACTGG | 3 cut(s) | 343, 940, 1173 |
| BssECI | CCNNGG | 3 cut(s) | 188, 964, 1199 |
| BssMI | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| BssT1I | CCWWGG | 3 cut(s) | 188, 964, 1199 |
| Bst4CI | ACNGT | 1 cut(s) | 1155 |
| Bst6I | CTCTTC | 3 cut(s) | 460, 738, 1018 |
| BstBAI | YACGTR | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 3 cut(s) | 144, 161, 549 |
| BstDEI | CTNAG | 2 cut(s) | 51, 942 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 384 |
| BstF5I | GGATG | 1 cut(s) | 672 |
| BstHHI | GCGC | 2 cut(s) | 279, 547 |
| BstKTI | GATC | 8 cut(s) | 35, 201, 250, 308, 589, 973, 1036, 1174 |
| BstMBI | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 487, 542 |
| BstNSI | RCATGY | 2 cut(s) | 347, 1089 |
| BstV1I | GCAGC | 2 cut(s) | 81, 493 |
| BstV2I | GAAGAC | 1 cut(s) | 161 |
| BstX2I | RGATCY | 2 cut(s) | 32, 586 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 273, 1200 |
| BstYI | RGATCY | 2 cut(s) | 32, 586 |
| BsuRI | GGCC | 1 cut(s) | 578 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| BtrI | CACGTC | 1 cut(s) | 127 |
| BtsCI | GGATG | 1 cut(s) | 672 |
| BtsI | GCAGTG | 1 cut(s) | 1027 |
| BtsIMutI | CAGTG | 3 cut(s) | 714, 950, 1027 |
| Cac8I | GCNNGC | 3 cut(s) | 144, 161, 549 |
| CaiI | CAGNNNCTG | 1 cut(s) | 804 |
| CfoI | GCGC | 2 cut(s) | 279, 547 |
| Cfr13I | GGNCC | 3 cut(s) | 564, 938, 961 |
| Csp6I | GTAC | 3 cut(s) | 21, 353, 461 |
| CviAII | CATG | 6 cut(s) | 100, 189, 344, 561, 1031, 1086 |
| CviJI | RGCY | 9 cut(s) | 94, 146, 193, 322, 392, 452, 536, 578, 1040 |
| CviKI_1 | RGCY | 9 cut(s) | 94, 146, 193, 322, 392, 452, 536, 578, 1040 |
| CviQI | GTAC | 3 cut(s) | 21, 353, 461 |
| DdeI | CTNAG | 2 cut(s) | 51, 942 |
| DpnI | GATC | 8 cut(s) | 34, 200, 249, 307, 588, 972, 1035, 1173 |
| DpnII | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| Eam1104I | CTCTTC | 3 cut(s) | 460, 738, 1018 |
| EarI | CTCTTC | 3 cut(s) | 460, 738, 1018 |
| EciI | GGCGGA | 1 cut(s) | 711 |
| Eco130I | CCWWGG | 3 cut(s) | 188, 964, 1199 |
| Eco47I | GGWCC | 3 cut(s) | 564, 938, 961 |
| Eco57I | CTGAAG | 2 cut(s) | 441, 807 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 384 |
| EcoT14I | CCWWGG | 3 cut(s) | 188, 964, 1199 |
| EcoT22I | ATGCAT | 1 cut(s) | 349 |
| ErhI | CCWWGG | 3 cut(s) | 188, 964, 1199 |
| FaeI | CATG | 6 cut(s) | 103, 192, 347, 564, 1034, 1089 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 860, 892 |
| FaqI | GGGAC | 1 cut(s) | 1179 |
| FatI | CATG | 6 cut(s) | 99, 188, 343, 560, 1030, 1085 |
| FauI | CCCGC | 2 cut(s) | 556, 983 |
| FbaI | TGATCA | 1 cut(s) | 1033 |
| FblI | GTMKAC | 1 cut(s) | 640 |
| Fnu4HI | GCNGC | 5 cut(s) | 95, 147, 482, 485, 488 |
| FokI | GGATG | 1 cut(s) | 659 |
| Fsp4HI | GCNGC | 5 cut(s) | 95, 147, 482, 485, 488 |
| FspBI | CTAG | 3 cut(s) | 393, 774, 824 |
| GlaI | GCGC | 2 cut(s) | 278, 546 |
| GluI | GCNGC | 5 cut(s) | 95, 147, 482, 485, 488 |
| HaeIII | GGCC | 1 cut(s) | 578 |
| HhaI | GCGC | 2 cut(s) | 279, 547 |
| Hin1II | CATG | 6 cut(s) | 103, 192, 347, 564, 1034, 1089 |
| Hin6I | GCGC | 2 cut(s) | 277, 545 |
| HinP1I | GCGC | 2 cut(s) | 277, 545 |
| HincII | GTYRAC | 1 cut(s) | 997 |
| HindII | GTYRAC | 1 cut(s) | 997 |
| HinfI | GANTC | 6 cut(s) | 82, 683, 801, 839, 1091, 1177 |
| HpaI | GTTAAC | 1 cut(s) | 997 |
| HphI | GGTGA | 1 cut(s) | 728 |
| Hpy166II | GTNNAC | 5 cut(s) | 641, 961, 984, 997, 1188 |
| Hpy188I | TCNGA | 7 cut(s) | 106, 252, 295, 787, 838, 858, 1176 |
| Hpy188III | TCNNGA | 3 cut(s) | 373, 387, 748 |
| Hpy8I | GTNNAC | 5 cut(s) | 641, 961, 984, 997, 1188 |
| HpyAV | CCTTC | 3 cut(s) | 326, 518, 577 |
| HpyCH4III | ACNGT | 1 cut(s) | 1155 |
| HpyCH4IV | ACGT | 2 cut(s) | 23, 126 |
| HpyCH4V | TGCA | 7 cut(s) | 76, 347, 481, 507, 765, 865, 1159 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 487, 542 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 942 |
| HpySE526I | ACGT | 2 cut(s) | 23, 126 |
| Hsp92II | CATG | 6 cut(s) | 103, 192, 347, 564, 1034, 1089 |
| HspAI | GCGC | 2 cut(s) | 277, 545 |
| Ksp22I | TGATCA | 1 cut(s) | 1033 |
| KspAI | GTTAAC | 1 cut(s) | 997 |
| Kzo9I | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| LmnI | GCTCC | 3 cut(s) | 389, 408, 1119 |
| Lsp1109I | GCAGC | 2 cut(s) | 81, 493 |
| LweI | GCATC | 3 cut(s) | 63, 356, 1131 |
| MaeI | CTAG | 3 cut(s) | 393, 774, 824 |
| MaeII | ACGT | 2 cut(s) | 23, 126 |
| MaeIII | GTNAC | 4 cut(s) | 122, 818, 872, 928 |
| MalI | GATC | 8 cut(s) | 34, 200, 249, 307, 588, 972, 1035, 1173 |
| MbiI | CCGCTC | 1 cut(s) | 990 |
| MboI | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| MboII | GAAGA | 6 cut(s) | 77, 161, 358, 447, 725, 1005 |
| MfeI | CAATTG | 3 cut(s) | 77, 150, 309 |
| MflI | RGATCY | 2 cut(s) | 32, 586 |
| MluCI | AATT | 9 cut(s) | 77, 150, 255, 309, 396, 424, 623, 677, 1135 |
| MlyI | GAGTC | 1 cut(s) | 1171 |
| MmeI | TCCRAC | 2 cut(s) | 283, 897 |
| MnlI | CCTC | 5 cut(s) | 307, 380, 463, 568, 951 |
| Mph1103I | ATGCAT | 1 cut(s) | 349 |
| MseI | TTAA | 4 cut(s) | 650, 659, 881, 996 |
| MslI | CAYNNNNRTG | 3 cut(s) | 719, 741, 870 |
| MspA1I | CMGCKG | 2 cut(s) | 484, 551 |
| MunI | CAATTG | 3 cut(s) | 77, 150, 309 |
| Mva1269I | GAATGC | 1 cut(s) | 507 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 487, 542 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeII | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| NlaIII | CATG | 6 cut(s) | 103, 192, 347, 564, 1034, 1089 |
| NmuCI | GTSAC | 2 cut(s) | 122, 872 |
| NsiI | ATGCAT | 1 cut(s) | 349 |
| NspI | RCATGY | 2 cut(s) | 347, 1089 |
| PciI | ACATGT | 1 cut(s) | 1085 |
| PctI | GAATGC | 1 cut(s) | 507 |
| PfeI | GAWTC | 5 cut(s) | 82, 683, 801, 839, 1091 |
| PkrI | GCNGC | 5 cut(s) | 96, 148, 483, 486, 489 |
| PleI | GAGTC | 1 cut(s) | 1171 |
| PpsI | GAGTC | 1 cut(s) | 1171 |
| Ppu21I | YACGTR | 1 cut(s) | 24 |
| PscI | ACATGT | 1 cut(s) | 1085 |
| PspPI | GGNCC | 3 cut(s) | 564, 938, 961 |
| PstNI | CAGNNNCTG | 1 cut(s) | 804 |
| PsuI | RGATCY | 2 cut(s) | 32, 586 |
| RsaI | GTAC | 3 cut(s) | 22, 354, 462 |
| RsaNI | GTAC | 3 cut(s) | 21, 353, 461 |
| RseI | CAYNNNNRTG | 3 cut(s) | 719, 741, 870 |
| SaqAI | TTAA | 4 cut(s) | 650, 659, 881, 996 |
| SatI | GCNGC | 5 cut(s) | 95, 147, 482, 485, 488 |
| Sau3AI | GATC | 8 cut(s) | 32, 198, 247, 305, 586, 970, 1033, 1171 |
| Sau96I | GGNCC | 3 cut(s) | 564, 938, 961 |
| ScaI | AGTACT | 1 cut(s) | 354 |
| SchI | GAGTC | 1 cut(s) | 1171 |
| SfaNI | GCATC | 3 cut(s) | 63, 356, 1131 |
| SinI | GGWCC | 3 cut(s) | 564, 938, 961 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 719, 741, 870 |
| Sse9I | AATT | 9 cut(s) | 77, 150, 255, 309, 396, 424, 623, 677, 1135 |
| SspMI | CTAG | 3 cut(s) | 393, 774, 824 |
| StyI | CCWWGG | 3 cut(s) | 188, 964, 1199 |
| TaaI | ACNGT | 1 cut(s) | 1155 |
| TaiI | ACGT | 2 cut(s) | 26, 129 |
| TaqI | TCGA | 2 cut(s) | 330, 747 |
| TasI | AATT | 9 cut(s) | 77, 150, 255, 309, 396, 424, 623, 677, 1135 |
| TatI | WGTACW | 1 cut(s) | 352 |
| TauI | GCSGC | 3 cut(s) | 149, 487, 490 |
| TfiI | GAWTC | 5 cut(s) | 82, 683, 801, 839, 1091 |
| Tru1I | TTAA | 4 cut(s) | 650, 659, 881, 996 |
| Tru9I | TTAA | 4 cut(s) | 650, 659, 881, 996 |
| TscAI | CASTG | 3 cut(s) | 721, 950, 1027 |
| TseFI | GTSAC | 2 cut(s) | 122, 872 |
| TseI | GCWGC | 2 cut(s) | 94, 481 |
| Tsp45I | GTSAC | 2 cut(s) | 122, 872 |
| TspDTI | ATGAA | 5 cut(s) | 347, 455, 692, 997, 1095 |
| TspRI | CASTG | 3 cut(s) | 721, 950, 1027 |
| VpaK11BI | GGWCC | 3 cut(s) | 564, 938, 961 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 384 |
| XapI | RAATTY | 2 cut(s) | 255, 1135 |
| XceI | RCATGY | 2 cut(s) | 347, 1089 |
| XmiI | GTMKAC | 1 cut(s) | 640 |
| XspI | CTAG | 3 cut(s) | 393, 774, 824 |
| ZrmI | AGTACT | 1 cut(s) | 354 |
| Zsp2I | ATGCAT | 1 cut(s) | 349 |